TCONS_00057545 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057545
Unique NameTCONS_00057545
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length143

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057545 ID=TCONS_00057545|Name=TCONS_00057545|organism=Clytia hemisphaerica|type=transcript|length=143bp
AGAACTTTCAGAAAAGAAGGTTTTCAAGTTCAAAAAGATGCGCCAGCCTA
AACCTCCATATGAACAGACTAAAGATTGTATCCAAGATGGATCAGTTTCT
GAGATGATTGAAACTTTTGATGCTTTTGATGCCCCTCCACCAT
Run BLAST on NCBI

transcript from alignment at scaffold_292:119054..119458+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057545 ID=TCONS_00057545|Name=TCONS_00057545|organism=Clytia hemisphaerica|type=transcript|length=405bp|location=Sequence derived from alignment at scaffold_292:119054..119458+ (Clytia hemisphaerica)
AGAACTTTCAGAAAAGAAGGTTTTCAAGTTCAAAAAGATGCGCCAGCCTA
AACCTCCATATGAACAGGTCAGTACTAAAAAAACTTTGTAGATAACTGCT
AGTGTGTTGTctaacaataaaataaaattaaattttttaagatGTTCTTA
GTTCAATTTAGGCCCAAGTCGCTTCTCTTGattaatgattatttttttgt
attaaatatATTTAATCATGATCGGCAGAACTTAAACTTCATAGGTTTGC
CATAAAATACTCAACAACAGATATAAGTGGAACATACTGCAGTAATAAAT
TTGAAGTACCATTTCTCTTATTGCTTTAGACTAAAGATTGTATCCAAGAT
GGATCAGTTTCTGAGATGATTGAAACTTTTGATGCTTTTGATGCCCCTCC
ACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036282XLOC_036282Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057545-exon-scaffold_292-1491911889:119054..119120TCONS_00057545-exon-scaffold_292-1491911889:119054..119120Clytia hemisphaericaexon
TCONS_00057545-exon-scaffold_292-1510915933:119054..119120TCONS_00057545-exon-scaffold_292-1510915933:119054..119120Clytia hemisphaericaexon
TCONS_00057545-exon-scaffold_292-1575043694:119054..119120TCONS_00057545-exon-scaffold_292-1575043694:119054..119120Clytia hemisphaericaexon
TCONS_00057545-exon-scaffold_292-1491911889:119383..119458TCONS_00057545-exon-scaffold_292-1491911889:119383..119458Clytia hemisphaericaexon
TCONS_00057545-exon-scaffold_292-1510915933:119383..119458TCONS_00057545-exon-scaffold_292-1510915933:119383..119458Clytia hemisphaericaexon
TCONS_00057545-exon-scaffold_292-1575043694:119383..119458TCONS_00057545-exon-scaffold_292-1575043694:119383..119458Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_292supercontigscaffold_292:119054..119458 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057545 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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