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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057539 ID=TCONS_00057539|Name=TCONS_00057539|organism=Clytia hemisphaerica|type=transcript|length=1195bp
cccccccccggctattaggtacccgagagtatatatctcgactttggaaa
atagtttggCCGAAATACTTTCAGATCTTGTACAGAACCAGACAGAATGT
TAGAAAGATTCCCCCAGAATTAAAGGAAATAGTATCCTACATTTAATGAA
AGcacacaattttaaaaactgtCGAAAAACGAAAATTATTTCCAAATACT
TCAAATAAGGTTTATACTATTAATTTGGTAAGATTTGTGATTCGGAAATT
AAAGTCTCAGGTAGAGCCTCTGGTTCCAATCTCTGGCGCTTCTCTAGAGA
ATTATCATCACATAAAGGACCCTCCTCCACAAGTTTATGTTTTAATTGAA
AACCCAGGATGTCTGTCTGTATATTCTCTGCCATCACAAAATGTGCTGTT
GCATCTTTATGGTCTATTAGTGGAGTTTGCGTTGCAGTGTTTCCCGTCAC
TGCTTCAAAATCGATTGTGTATGATGGTACTACAGTGGGTTGTGGTTCAC
TTTGAATTATATTTAACACAGATTGAGTGTCTGTAGTAATCACTATAGGT
TTATTGTTCACCAATCcagttttacttttctttttaccACCCTGCGTATA
TGAATGGTCGTCCTTTACTGTCTCTGTTAGGTCTTTAGGAAACTGTACAC
CCACATCTTCCATAAATTTAAACTGAAAATTAACTTGTTGTCCAAAATTC
TTTTTACGTAATTTACATCGACATTTACATTGACATTCAGTTTGTGTGCT
TTTAAAACGATCTCTGTATTCTTTCTCCAGTCGTAAACGCTCATACTCCA
GCCTTCTTTGTAAAACTTTATTTTTCCAGCTTTCTTTAATATGTTGCACT
TTCTCATGATAAAACATGCGACCAGGAAATATAGTTGGAACAGCATCaag
ttttaactttcgtttCACTTTTGTTGGTCCATATTTACGTTTGTATTCTt
cccatttttcatcaaaacaatcTTCAGTAAAGTGATCAGAACAAACTGCA
ACATCTTTAGGTAATGTCGATCGATTGATAGCTAAGATCCACAGCTCTCT
TATCTCCATACGGTCTTCACTTGGTAGATCATGAAGAGAATAGTTCCGTG
TATCAACATGCCATTCTTCTTTCTTAGTCTTATGGTGATGCGTGTTCTTA
CAACCCGGTATGCAGCAATGAACcattttgtgtgtttttttcact Run BLAST on NCBI protein sequence of TCONS_00057539-protein >TCONS_00057539-protein ID=TCONS_00057539-protein|Name=TCONS_00057539-protein|organism=Clytia hemisphaerica|type=polypeptide|length=324bp
VKKTHKMVHCCIPGCKNTHHHKTKKEEWHVDTRNYSLHDLPSEDRMEIRE
LWILAINRSTLPKDVAVCSDHFTEDCFDEKWEEYKRKYGPTKVKRKLKLD
AVPTIFPGRMFYHEKVQHIKESWKNKVLQRRLEYERLRLEKEYRDRFKST
QTECQCKCRCKLRKKNFGQQVNFQFKFMEDVGVQFPKDLTETVKDDHSYT
QGGKKKSKTGLVNNKPIVITTDTQSVLNIIQSEPQPTVVPSYTIDFEAVT
GNTATQTPLIDHKDATAHFVMAENIQTDILGFQLKHKLVEEGPLCDDNSL
EKRQRLEPEALPETLISESQILPN Run BLAST on NCBI transcript from alignment at scaffold_291:131853..133047 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057539 ID=TCONS_00057539|Name=TCONS_00057539|organism=Clytia hemisphaerica|type=transcript|length=1195bp|location=Sequence derived from alignment at scaffold_291:131853..133047 (Clytia hemisphaerica)
agtgaaaaaaacacacaaaatgGTTCATTGCTGCATACCGGGTTGTAAGA
ACACGCATCACCATAAGACTAAGAAAGAAGAATGGCATGTTGATACACGG
AACTATTCTCTTCATGATCTACCAAGTGAAGACCGTATGGAGATAAGAGA
GCTGTGGATCTTAGCTATCAATCGATCGACATTACCTAAAGATGTTGCAG
TTTGTTCTGATCACTTTACTGAAgattgttttgatgaaaaatgggaAGAA
TACAAACGTAAATATGGACCAACAAAAGTGaaacgaaagttaaaacttGA
TGCTGTTCCAACTATATTTCCTGGTCGCATGTTTTATCATGAGAAAGTGC
AACATATTAAAGAAAGCTGGAAAAATAAAGTTTTACAAAGAAGGCTGGAG
TATGAGCGTTTACGACTGGAGAAAGAATACAGAGATCGTTTTAAAAGCAC
ACAAACTGAATGTCAATGTAAATGTCGATGTAAATTACGTAAAAAGAATT
TTGGACAACAAGTTAATTTTCAGTTTAAATTTATGGAAGATGTGGGTGTA
CAGTTTCCTAAAGACCTAACAGAGACAGTAAAGGACGACCATTCATATAC
GCAGGGTggtaaaaagaaaagtaaaactgGATTGGTGAACAATAAACCTA
TAGTGATTACTACAGACACTCAATCTGTGTTAAATATAATTCAAAGTGAA
CCACAACCCACTGTAGTACCATCATACACAATCGATTTTGAAGCAGTGAC
GGGAAACACTGCAACGCAAACTCCACTAATAGACCATAAAGATGCAACAG
CACATTTTGTGATGGCAGAGAATATACAGACAGACATCCTGGGTTTTCAA
TTAAAACATAAACTTGTGGAGGAGGGTCCTTTATGTGATGATAATTCTCT
AGAGAAGCGCCAGAGATTGGAACCAGAGGCTCTACCTGAGACTTTAATTT
CCGAATCACAAATCTTACCAAATTAATAGTATAAACCTTATTTGAAGTAT
TTGGAAATAATTTTCGTTTTTCGacagtttttaaaattgtgtgCTTTCAT
TAAATGTAGGATACTATTTCCTTTAATTCTGGGGGAATCTTTCTAACATT
CTGTCTGGTTCTGTACAAGATCTGAAAGTATTTCGGccaaactattttcc
aaagtcgagatatatactctcgggtacctaatagccggggggggg Coding sequence (CDS) from alignment at scaffold_291:131853..133047 >TCONS_00057539 ID=TCONS_00057539|Name=TCONS_00057539|organism=Clytia hemisphaerica|type=CDS|length=975bp|location=Sequence derived from alignment at scaffold_291:131853..133047 (Clytia hemisphaerica)
gtgaaaaaaacacacaaaatgGTTCATTGCTGCATACCGGGTTGTAAGAA
CACGCATCACCATAAGACTAAGAAAGAAGAATGGCATGTTGATACACGGA
ACTATTCTCTTCATGATCTACCAAGTGAAGACCGTATGGAGATAAGAGAG
CTGTGGATCTTAGCTATCAATCGATCGACATTACCTAAAGATGTTGCAGT
TTGTTCTGATCACTTTACTGAAgattgttttgatgaaaaatgggaAGAAT
ACAAACGTAAATATGGACCAACAAAAGTGaaacgaaagttaaaacttGAT
GCTGTTCCAACTATATTTCCTGGTCGCATGTTTTATCATGAGAAAGTGCA
ACATATTAAAGAAAGCTGGAAAAATAAAGTTTTACAAAGAAGGCTGGAGT
ATGAGCGTTTACGACTGGAGAAAGAATACAGAGATCGTTTTAAAAGCACA
CAAACTGAATGTCAATGTAAATGTCGATGTAAATTACGTAAAAAGAATTT
TGGACAACAAGTTAATTTTCAGTTTAAATTTATGGAAGATGTGGGTGTAC
AGTTTCCTAAAGACCTAACAGAGACAGTAAAGGACGACCATTCATATACG
CAGGGTggtaaaaagaaaagtaaaactgGATTGGTGAACAATAAACCTAT
AGTGATTACTACAGACACTCAATCTGTGTTAAATATAATTCAAAGTGAAC
CACAACCCACTGTAGTACCATCATACACAATCGATTTTGAAGCAGTGACG
GGAAACACTGCAACGCAAACTCCACTAATAGACCATAAAGATGCAACAGC
ACATTTTGTGATGGCAGAGAATATACAGACAGACATCCTGGGTTTTCAAT
TAAAACATAAACTTGTGGAGGAGGGTCCTTTATGTGATGATAATTCTCTA
GAGAAGCGCCAGAGATTGGAACCAGAGGCTCTACCTGAGACTTTAATTTC
CGAATCACAAATCTTACCAAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057539-exon-scaffold_291-1491911889:131853..133047 | TCONS_00057539-exon-scaffold_291-1491911889:131853..133047 | Clytia hemisphaerica | exon |
| TCONS_00057539-exon-scaffold_291-1510915933:131853..133047 | TCONS_00057539-exon-scaffold_291-1510915933:131853..133047 | Clytia hemisphaerica | exon |
| TCONS_00057539-exon-scaffold_291-1575043694:131853..133047 | TCONS_00057539-exon-scaffold_291-1575043694:131853..133047 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_291 | supercontig | scaffold_291:131853..133047 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006612 | Znf_C2CH |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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