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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057511 ID=TCONS_00057511|Name=TCONS_00057511|organism=Clytia hemisphaerica|type=transcript|length=1691bp
ATAATCCATTTATAGGcctgcaaaaataaagtaataaaagcaattgacat
tttaatgatgtcTAATTTCATAACTGGTCACTATGGAGAAATATTGACCG
GCCACGTGACATTAATCATCCAAccagttttcttaaaaatgattgacagt
tgtattgcagggctataaagtactttaatgggataaactttcgcggggac
ttaatttcacgGATGGCGCTATTGGGTGggaatattttcacgattttgNA
GAAGTCATACTGGAGTACATTCTTCACCAAAAACAAGCCAAcaacaagaa
aatgaaagcCTATGAAAAACAGttGAAAAAAGACGAGAAAACACAAACAG
AAGAGGAAGAGATCGCCAAGGGAGAAGTTGTCACCAAATTTCTCACAACA
GAAAAAGCCATCAAAACAAAACGCGAAAATCCATTCAAAAGTGAGAAAAG
TGAAGACCAAGCTGGCCCTTCATCcaacaagaaaaacaaagaagaggAAA
TCAAAACCATGAATATCAATACGAACGCCCAGGAGAAGAAGAATCTTCCA
AGTTTTTGGATTCCCTCCCTCACACCACAAGCCAGCCAATCAAGAGTAGA
GAAGCCAGACAGTAAAGTGTACTGTCCCATGAGTGGCAAACCTATCAAAC
TAAAAGACTTAATTTCCGTAAAATTCACTCTGGCGCCTGCTGACGAATCA
GATAAGCAGAAATCGATTGTCGCTAGGAAACAGCGTTATATTTGTCCGGT
TACTAGGGACGTTTTAAGTAACACTGTCCGATCGGCGGTGCTGAAACCGT
CCGGTAATGTAGTTTCGATGGAATGCGTTGAGAAGTTTATAAAGAAAGAC
TGGGTTTGTCCGATCACTGGACACAAATTGAAAGAAAAGGATGTCATCGA
GCTAAAACGTGGTGGAACAGGTTACTCGTCCGTTGGTAAAGACTCTCTTG
AAGGAAAAGCGTATGGGCCAACCATGATGGTCAGCTAGAATCATTTATAT
TCACCTTGAAAGAATGTTGCATGCGTTGTTATACGTGCGTTGTCCGGAAG
AGGAGGTGCTTCGATGGATTAAATATTAACTAACTTCCACACGTTTTACT
TACGTAATATCAGTTGCGTAGCCAACAGGGTGCAAGATTTGTATAAGAGA
GAGAGAGTTGGTTGAGCCATTGAGTTCAGAGTCCCGAATGGGATAGAGAG
GAAACTCTTGGCTTGGAAATGAAGCTACTTTTTCCCATCCAAACTGCGTA
GTTTTCATACAAACGtcgtattgaaaataaaattcattgcTTTGGTTTTG
AAAAATGTACCACGTGACAATGTGTGGTTTCTCAATACGGcgttttttct
tgcttgagaaaggttgaagattcctctctagctctcttgggctttaaact
caatgggctGAACCCTGTTATGACATCTCTTTACTGGCTTATGAAAACAT
TTGCACTGTTAAAGGACTGAAAACTTTATAACAGCTGAGACTGACCTGAA
TTTTAGCGACCCTTTTACCAGATAAAGAATTTTCTTCATTATTGTGAGAA
TAAATACCTAAAAGTTTGCAAATAATACTCTGAAGCCACTTTATGGTAGT
GATTCGAAACCACAGATTTTAATACTCGCTCACACACACTTTGCgttaaa
attcttttcttttcgaacataatttaaaatttcgTATAAAT Run BLAST on NCBI transcript from alignment at scaffold_291:114476..121056+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057511 ID=TCONS_00057511|Name=TCONS_00057511|organism=Clytia hemisphaerica|type=transcript|length=6581bp|location=Sequence derived from alignment at scaffold_291:114476..121056+ (Clytia hemisphaerica)
ATAATCCATTTATAGGcctgcaaaaataaagtaataaaagcaattgacat
tttaatgatgtcTAATTTCATAACTGGTCACTATGGAGAAATATTGACCG
GCCACGTGACATTAATCATCCAAccagttttcttaaaaatgattgacagt
tgtattgcagggctataaagtactttaatgggataaactttcgcggggac
ttaatttcacgGATGGCGCTATTGGGTGggaatattttcacgattttgNA
GAAGTCATACTGGAGTACATTCTTCACCAAAAACAAGCCAAcaacaagaa
aatgaaagcCTATGAAAAACAGGTACTTTAATAGTTTTCTCCTGGGTCAG
TCCCCCAGAAATTCTAGACGACCCGATTGTCAAATCCCacccctgaaaat
gaaaaaaaatcgttttcacACGCCTTTTGTGTTTTCCCTCCCAGAAATGT
ttaaatccccccccccctcttcaCGACCTGGATCCGGGCAATTAATTTTT
ATGCAGCTTATATTTTAAATTGCACACCAAAatgtagttttgaaaaaatt
tcaccacaagagaaaaaaaattagattgcCAATATCTaaataaaatgctt
tttttgaattttatttacaaGAAATGTAAATGATAttcacgctttttctt
ttataagaataacttctataagaatatcagggtgagatttcgggtttaaa
acaataggccgaTTGTTtcgaacaatagaaaaataagaataatgctcacc
ctcaaccaaagtacactattcttataaaaaaaagcgtgtactgttttctg
atttctgttaaaagttgaaaagttttttccCCAGAAAGATTTTGTTGCAC
CTTTTTAAACCCCCCCTGGACTTCCATTTTTccttttgccccccccccct
ttttggaaatttttttgaaaaaatccccCCAgctaaaaggggggggggga
gaaaaCTAAGCttttccttttcaaattttcttaactgCTGATgtgacttt
gaaaaaaaaagccatgttcttttattatttgcagggtgtctacgggacct
tgaaaaccttgaaaatgaaccacccaaccttgaaaaccttgaaaactatc
aattttctgggaaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttgtttgacatattttg
agttttatttagaaatatttcgcggatgaggcccttccaaatttccattg
ggatttaatttcgcggattttcgcggatgacacccaagtCCGCGAAatac
gcgaaatttaatccccgcgaaagtttatcccattaaagtatgttATTCCA
TTAATAACAGCTACACATGACATTTTATagctaaaatgtaaaaaagcctT
TGTACCTCATTTTAGGAAAGTTTTGAGCATCATATTTACCCACATTACTG
GGAAATCCTATTTCATAAACAGGGTAACGTGTGTTTTTGTTGTAAGTTTT
CCTGATATTGTCACTTTCACccgatttcagatttttaaaaagaaaataaa
aaaaacttaaaacatcaattttatttttattttatttccatcctcctgtc
caaaacttttcctcataatgtccgtaaaccagaaaataaaaaagtaattg
ccttaaTAGCAGTATTTCATCTTttcttaaaaactttgaaacataATATG
ATTATTAAATCATCTTCTCTCTcgtaaaaaataacaataagaaaaaacaa
caacataatATGACACGCCATGGTAAAAATTGTACGGCAGGTGCTGTGTA
CACATATCATGAAAAGCAGAAAGACACCAAACAATCAGGATGGGGTTCGC
AACAAGCTCGATACAGTAAAGACTCCATCAAAGATTTTGACTGCTGCTCA
TTGACTCTTCAGCCCTGCAAGGACCCAGTAGTGACAAAAGAAGGCCACCT
GTATGAGAGAGAAGTCATACTGGAGTACATTCTTCACCAAAAACAAGCCA
AcaacaagaaaatgaaagcCTATGAAAAACAGGTACTTTAATAGTTTTCT
CTTGGGTCAGTCCCCCAGAAATTCTAGACGACCCGGTTGTCAAATCCCac
ccctgaaaatgaaaaaaaatcgttttcacACGCCTTTTGTGTTTTCCCTC
CCAGAAATGTTGAAATCCCCCCcccttttcggcccaggtccAGGGGACcg
ttcggggacccccgttcggtgtccgggaggccccgaaatNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNtctacgggaccttgaaaaccttgaaaatgaaccac
ccaaccttgaaaaccttgaaaactatcaattttctgggaaaaaccttgaa
aaccttgaaaaatcgctaaaaatcttgaaaagcaCTTCTTTATCATACAA
TCTTTTCAACAGGGCAGTGGTTGAGTGTAGGTTTTTCTCTAGAATTGCAA
ATTGAGGTATCTTGCCGGACATCCCTCTACCATGATTTTTCCGATTTAGA
GtaatctgaaaaattaagaacgcatttttaagaacatttcagctGAAAAA
TGCTAAGGAAATAAGCACATACAGGCTCAGCAAAGTTTTAactgttttaa
taaaaaaaaacgtgtacttcatTAAATCATGTAAAAATATCTCTATAAAA
TTGCCTTTTGATTGATGGGTTGAAGCCATTGCATAAGGGTGACCGGACTG
AATTTTCTATagaatttcctaaggggggtctgaattttcaaatgtatttT
CTAAGGGGTTACCACCTAGGGATTCTCCCAATGTATTACAAGGTTTTCAG
TACAACTAACCAAAGACAAAATGGAATTTTTAATACACTAATTTTGCACT
GATTTTTTGCCTGACCACTTTTTCTGCCCACCCTGTATGGCTCATATGGC
TAAAGGATATAAAAGTTATTTCTTATATCTATTAGCCTTTGAATATTTGT
TTTTCACGATGTCTGCTAGTTGTATCTTACAAACCTATCTGAGAGCCATG
TCAActgagtatcaaaaaaccttgaaaaatgtcaacattttttgccaaaa
agactttaaaaaccacttaaaaatgatcaaaacaaccttgaaaaccttga
aaatcccgAAAGAAAATCTATACTTCTTTAAACATTGATCCTGAGGAGGG
AAATATAATTAGAAAATACCTCGTTGGATGAATAattggaaaatgaagat
gaaaaatgagcATGAAAGAAAATCTTTTCCGAAGACCCTTTTTACTTTGG
CTAAAAATAAACCATCTGAGCCAAACAAATTCtttcaaagatgtttttct
tcATTCAAATAAGGTTATCAAAGttgaaataatcaaataaacgaaaatgt
accgggtgacccacaaATAATTCAGAATTTTGTTGGCTAGATCAGGCAGA
AATTAACTTTTTATAACGCAATGGTGAaatgtttaaaggttttgttttta
aataagagtgatatcgtttgcttactcatcaattttaatcacAACTGTTT
CACATTGGAttaacacggatgtggagcaagattggtcagatataggaaaa
gaaaaacatttttttgcatatatcagcataatataactaaagcaagacac
tgtcctggtataaaatatgtgtcttatatgaaacgggaacacttatataa
aaacaaaacctttaaacacTGGTCACTTTAAAAATTAGACTGTAGTGTAG
GTCATATAATTTTTCAGTTGATTCcttttttctaattcagttGAAAAAAG
ACGAGAAAACACAAACAGAAGAGGAAGAGATCGCCAAGGGAGAAGTTGTC
ACCAAATTTCTCACAACAGAAAAAGCCATCAAAACAAAACGCGAAAATCC
ATTCAAAAGTGAGAAAAGTGAAGACCAAGCTGGCCCTTCATCcaacaaga
aaaacaaagaagaggAAATCAAAACCATGAATATCAATACGAGTGAGTTT
CCTTTTGGTTCGAAAGTTGATTCAAACCCTGCAATtatacgcttttttat
aagaatagtgtaatTTGGCTAagggtgagcattatttttattctattgtt
ctaaacaataggcctatttttctaactctgaaatctcacccttttattct
tatagaagttattcttatatgTAGGTATTTGGTAGTGGGGTTAATTAGTA
TAAGAAAACTGCAAATGGTTTTTTGACTCAATTTTGCACACTAACATTAT
ATCAAATGTAATAACTTTTGGCCGAGAGAGGCAAAATTTATAGGGCCTTC
ATTACCCTTGGAAACCGAAATAACGGTTGTTCGAGTTTCCTTAGTAACGG
GAAACTTTTtcgttaaaaaatgaaaatttgttcgTGCCAATCGAAAGAAc
acaaatttttgataaattagttaccttatcggccctttttacgccggccc
tttttGGCGTTATACTTGGGCTCGTgtcgtaataagggccggcgtaaaaa
gggccgataaggtatattaaACATGATCAAAAGTTTTGACTGTTTGAATT
TTGTCATTGATGTCATTATTTAGCCCACTGCAATTTAAGGCATATTTCAA
AATGCCatagcttttctcaaaatttgcaaaagtgtTCTCTGAtgaattta
aaaacttttggtCGAGAGGGGTAAAGTTTTGAAGTCCTAAGTTACACATG
GCAACGGTTTTGGCATTTGTAGTTTTCTAACAATCCAACATCGAGGAGGG
TTGTCAAGCAACTTGGAAATCCTTTtgagaacttttgcaaaattaTGATA
CCtgtaatatttccttttggTTCGAGGGTCGATTCATATTCATTAGAGAA
ATTATAAGTGAAAGTTCTCGTGCCACAAGTCTAGCCTCTTCgtcagaatt
ttcaaagaacCTTTTTATCCTTGATTAACATTACTTCGAGTgagtagatt
ttattttttagttccAGAGACTACGTAGTGGGCAGAGGGATCAAATAAAG
TTGGATATCCAGGTTCGATgattcaaaaaatcaatatcctcaacagtgga
agtaaaatctttttctggaaaagccatTATAAATCATTATAAGATTTGTT
TATTTATCTTTTAGACGCCCAGGAGAAGAAGAATCTTCCAAGTTTTTGGA
TTCCCTCCCTCACACCACAAGCCAGCCAATCAAGAGTAGAGAAGCCAGAC
AGTAAAGTGTACTGTCCCATGAGTGGCAAACCTATCAAACTAAAAGACTT
AATTTCCGTAAAATTCACTCTGGCGCCTGCTGACGAATCAGATAAGCAGA
AATCGATTGTCGCTAGGAAACAGCGTTATATTTGTCCGGTTACTAGGGAC
GTTTTAAGTAACACTGTCCGATCGGCGGTGCTGAAACCGTCCGGTAATGT
AGTTTCGATGGAATGCGTTGAGAAGTTTATAAAGAAAGACTGGGTTTGTC
CGATCACTGGACACAAATTGAAAGAAAAGGATGTCATCGAGCTAAAACGT
GGTGGAACAGGTTACTCGTCCGTTGGTAAAGACTCTCTTGAAGGAAAAGC
GTATGGGCCAACCATGATGGTCAGCTAGAATCATTTATATTCACCTTGAA
AGAATGTTGCATGCGTTGTTATACGTGCGTTGTCCGGAAGAGGAGGTGCT
TCGATGGATTAAATATTAACTAACTTCCACACGTTTTACTTACGTAATAT
CAGTTGCGTAGCCAACAGGGTGCAAGATTTGTATAAGAGAGAGAGAGTTG
GTTGAGCCATTGAGTTCAGAGTCCCGAATGGGATAGAGAGGAAACTCTTG
GCTTGGAAATGAAGCTACTTTTTCCCATCCAAACTGCGTAGTTTTCATAC
AAACGtcgtattgaaaataaaattcattgcTTTGGTTTTGAAAAATGTAC
CACGTGACAATGTGTGGTTTCTCAATACGGcgttttttcttgcttgagaa
aggttgaagattcctctctagctctcttgggctttaaactcaatgggctG
AACCCTGTTATGACATCTCTTTACTGGCTTATGAAAACATTTGCACTGTT
AAAGGACTGAAAACTTTATAACAGCTGAGACTGACCTGAATTTTAGCGAC
CCTTTTACCAGATAAAGAATTTTCTTCATTATTGTGAGAATAAATACCTA
AAAGTTTGCAAATAATACTCTGAAGCCACTTTATGGTAGTGATTCGAAAC
CACAGATTTTAATACTCGCTCACACACACTTTGCgttaaaattcttttct
tttcgaacataatttaaaatttcgTATAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00057511-exon-scaffold_291-1491911889:114476..114797 | TCONS_00057511-exon-scaffold_291-1491911889:114476..114797 | Clytia hemisphaerica | exon |
| TCONS_00057511-exon-scaffold_291-1510915933:114476..114797 | TCONS_00057511-exon-scaffold_291-1510915933:114476..114797 | Clytia hemisphaerica | exon |
| TCONS_00057511-exon-scaffold_291-1575043694:114476..114797 | TCONS_00057511-exon-scaffold_291-1575043694:114476..114797 | Clytia hemisphaerica | exon |
| TCONS_00057511-exon-scaffold_291-1491911889:118566..118767 | TCONS_00057511-exon-scaffold_291-1491911889:118566..118767 | Clytia hemisphaerica | exon |
| TCONS_00057511-exon-scaffold_291-1510915933:118566..118767 | TCONS_00057511-exon-scaffold_291-1510915933:118566..118767 | Clytia hemisphaerica | exon |
| TCONS_00057511-exon-scaffold_291-1575043694:118566..118767 | TCONS_00057511-exon-scaffold_291-1575043694:118566..118767 | Clytia hemisphaerica | exon |
| TCONS_00057511-exon-scaffold_291-1491911889:119890..121056 | TCONS_00057511-exon-scaffold_291-1491911889:119890..121056 | Clytia hemisphaerica | exon |
| TCONS_00057511-exon-scaffold_291-1510915933:119890..121056 | TCONS_00057511-exon-scaffold_291-1510915933:119890..121056 | Clytia hemisphaerica | exon |
| TCONS_00057511-exon-scaffold_291-1575043694:119890..121056 | TCONS_00057511-exon-scaffold_291-1575043694:119890..121056 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_291 | supercontig | scaffold_291:114476..121056 + |
Blast
BLAST of TCONS_00057511 vs. Swiss-Prot (Human)
Match: NOSIP (Nitric oxide synthase-interacting protein OS=Homo sapiens GN=NOSIP PE=1 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 3.415e-54 Identity = 110/235 (46.81%), Postives = 143/235 (60.85%), Query Frame = 2
Query: 251 EVILEYILHQKQANNKKMKAYXXXXXXXXXXXXXXXXIAKGEVVTKFLTTEKAIKTKRENPFK----SEKSED--QAGPSSXXXXXXXXXXXXXXXTNAQEKKNLPSFWIPSLTPQASQSRVEKPDSKVYCPMSGKPIKLKDLISVKFTLAPADESDKQKSIVARKQRYICPVTRDVLSNTVRSAVLKPSGNVVSMECVEKFIKKDWVCPITGHKLKEKDVIELKRGGTGYSSVG 937
E ILEYILHQK+ ++MKAYEKQ + Q E + A + V FL E AI ++ NPF S S D Q GPS + + K LPSFWIPSLTP+A +++EKP V CPMSGKP+++ DL V FT P D S + ++ R +RY+C VTRD LSN AVL+PSG VV++ECVEK I+KD V P+TG KL ++D+I L+RGGTG++ G
Sbjct: 68 EAILEYILHQKKEIARQMKAYEKQRGTRREEQKELQRAASQDHVRGFLEKESAIVSRPLNPFTAKALSGTSPDDVQPGPS-------------VGPPSKDKDKVLPSFWIPSLTPEAKATKLEKPSRTVTCPMSGKPLRMSDLTPVHFT--PLDSSVDRVGLITRSERYVCAVTRDSLSNATPCAVLRPSGAVVTLECVEKLIRKDMVDPVTGDKLTDRDIIVLQRGGTGFAGSG 287
The following BLAST results are available for this feature:
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