|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057475 ID=TCONS_00057475|Name=TCONS_00057475|organism=Clytia hemisphaerica|type=transcript|length=3974bpRun BLAST on NCBI protein sequence of TCONS_00057475-protein >TCONS_00057475-protein ID=TCONS_00057475-protein|Name=TCONS_00057475-protein|organism=Clytia hemisphaerica|type=polypeptide|length=929bp MFESKKSKSTWRRWFSPLRFALIMISLVFIWSVFLFVSTQHLNGGNTIKERun BLAST on NCBI transcript from alignment at scaffold_289:122086..142994- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057475 ID=TCONS_00057475|Name=TCONS_00057475|organism=Clytia hemisphaerica|type=transcript|length=20909bp|location=Sequence derived from alignment at scaffold_289:122086..142994- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_289:122086..142994- >TCONS_00057475 ID=TCONS_00057475|Name=TCONS_00057475|organism=Clytia hemisphaerica|type=CDS|length=55800bp|location=Sequence derived from alignment at scaffold_289:122086..142994- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00057475 vs. Swiss-Prot (Human)
Match: MGT5A (Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A OS=Homo sapiens GN=MGAT5 PE=2 SV=1) HSP 1 Score: 539.65 bits (1389), Expect = 2.780e-174 Identity = 278/633 (43.92%), Postives = 391/633 (61.77%), Query Frame = 3
Query: 1029 SDKDCNVPKVAGYPNCDAKAAWMKKFWTSDPCYQALGVNGTICSFIVYLSEIERWCPLFPGHNYRELAKKSGDGALAIKPEIKEHTKLKSLLDILQVGGEKKKFDWMSSRITRLWPTWVEAQTNLNKKVDLQSYEKKKILIYIGLLADEANYHFGDMATKGGPLGELVQWSDIISSLYLLGHDLTVVLNKSPNNKYGIKKMLTTSMGGQCPTEKKSQYDLIYTDYIGLAHMIRIF-KNVNSIKCYLRIVDSFGTEAQFNVKVDSHSKNL---YGFHGLNLKQYNTMFPHSPDNSFLGFVVENHIKPGEKLE----KKKRIALVYGKHINMWQDHKKIAFLDIVQKYFEIHATVGGQLDKKTKVKYALPSYVHNHGVLKGDEIQKLLRETTLFVGLGFPYEGPAPLEAIANGCFFLNVKLDPPLGRRNDKFFKSKPTERRLTSQHPYAERFIGKPHVYTVNISNLKEVEAALEDIDDKVVDPYLPYEFTNQGMMERLYMFTKHHDFCSSHLGAPSVNSTWPPMSARQVFVGEKDEGCDEVCGKKNLVCEPAYFNSINDVQSLPK----CMKPTKAASIIAPAYKVDPKNSNRDECLIQTNTALFSCTAKSPSSERVCPCRDFVRGQTALCKDCL 2891
+ + C +P + GYP+C+ K WMK W SDPCY GV+G+ CSF +YLSE+E WCP P + + I+ T L +++ + ++F WM RI R+ W++A +L +K +L+ ++KK+L+++GLL E+ + + A GGPLGELVQWSD+I+SLYLLGHD+ + + + K +KK++ G CPT +LIY D +GLA + + +C LR++DSFGTE +FN + SK +G LN +Q+ TMFPH+PDNSFLGFVVE H+ + K++ +LVYGK + W++ K +LDI+ Y E+HATV G K +PSYV NHG+L G ++Q LLRET LFVGLGFPYEGPAPLEAIANGC FLN K +PP +N FF KPT R LTSQHPYAE FIG+PHV+TV+++N +EVE A++ I ++ ++PY+PYEFT +GM++R+ F + DFC + WPP+SA QV + E + C +VC + L+CEP++F +N + + K C A I+ P++ DPKN + C+ Q + LFSC P +RVCPCRDF++GQ ALCKDCL
Sbjct: 141 AQEKCVLPPMDGYPHCEGKIKWMKDMWRSDPCYADYGVDGSTCSFFIYLSEVENWCPHLPWRAKNPYEEADHNSLAEIR------TDFNILYSMMK---KHEEFRWMRLRIRRMADAWIQAIKSLAEKQNLEKRKRKKVLVHLGLLTKESGFKIAETAFSGGPLGELVQWSDLITSLYLLGHDIRISASLA-ELKEIMKKVVGNRSG--CPTVGDRIVELIYIDIVGLAQFKKTLGPSWVHYQCMLRVLDSFGTEPEFNHANYAQSKGHKTPWGKWNLNPQQFYTMFPHTPDNSFLGFVVEQHLNSSDIHHINEIKRQNQSLVYGKVDSFWKNKK--IYLDIIHTYMEVHATVYGSSTKN------IPSYVKNHGILSGRDLQFLLRETKLFVGLGFPYEGPAPLEAIANGCAFLNPKFNPPKSSKNTDFFIGKPTLRELTSQHPYAEVFIGRPHVWTVDLNNQEEVEDAVKAILNQKIEPYMPYEFTCEGMLQRINAFIEKQDFCHGQV-------MWPPLSALQVKLAEPGQSCKQVCQESQLICEPSFFQHLNKDKDMLKYKVTCQSSELAKDILVPSF--DPKNKH---CVFQGDLLLFSCAGAHPRHQRVCPCRDFIKGQVALCKDCL 741 HSP 2 Score: 87.8113 bits (216), Expect = 2.348e-17 Identity = 64/207 (30.92%), Postives = 101/207 (48.79%), Query Frame = 3
Query: 159 FSPLRFALIMISLVFIWSVFLFVSTQHLNGGNTIKESDQIKNQIIELSKKYISTLAKEKGKNERD---------IDETQKTAILLQSMLQRIDQLESQLQHVIVN--------------STSKFEKM-VSDIQTLNHTIMYSLNGTLVRYRTVCHIPQSDPAYPHCTDKVEWLRKNWKSQKKFALKGVNGTVCSILEYLSNVEEECP 707
S + +++ FIW + L T + + S ++ QI++LSK+YI LA+E +N D D + A+LL ++LQRI +LES++ +++VN S EK+ V+DI +NG + C +P D YPHC K++W++ W+S +A GV+G+ CS YLS VE CP
Sbjct: 9 LSSQKLGFFLVTFGFIWGMMLLHFT--IQQRTQPESSSMLREQILDLSKRYIKALAEE-NRNVVDGPYAGVMTAYDLKKTLAVLLDNILQRIGKLESKVDNLVVNGTGTNSTNSTTAVPSLVALEKINVADI----------INGA----QEKCVLPPMD-GYPHCEGKIKWMKDMWRSDPCYADYGVDGSTCSFFIYLSEVENWCP 197 The following BLAST results are available for this feature:
BLAST of TCONS_00057475 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.