TCONS_00057470 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057470
Unique NameTCONS_00057470
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2454

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057470 ID=TCONS_00057470|Name=TCONS_00057470|organism=Clytia hemisphaerica|type=transcript|length=2454bp
aattgattgattgatgttTAGCTTTTGATCCTGGTATGAACAGAGCGACT
GTTCTTTTGatgtttcttttgttaaaaGACGGAACATTACAAGAAAATTT
AACTGTGTCCGATGGTGCTGTGTTTTGATGCAATTTTGTTGCATGCATTA
AAAACtttatcattaaaaaaagacaatagaaaaaaaataatgaaatcagC
ATCACGAACTATGGACTGGATGCGAACagaacaaaaatacaaaattgaga
GACGTCCACAGATTTCCTGTTTCAATGCTCGCATCGATTTTCTGAACAAC
TTATCGGACGGAATTGTCAAGAAGTTACCAAAGCAACGGAAGATCAGCAG
TAGTAGTAGACAATTGGAAATGCCATTACCTCCTGGGTGTTTCCCAGAGA
AAGTTTCATTAGCCTTGAGTAAATCATCAAACAGTTTATGCGAGTCTGAT
ACTTCGTCTACTATTCCGAATCGGGGTTTGAATACAATGTCAACGAACGT
GGAATCTATCCCTGAAACTGATGTCGTTGCTATGGAGAGTCGAATTGATA
CCTGGTATGCTAGTCTAAGTAAAATGTCGGATAATGAAGATCTGAACGAG
GATGAAGTTTTGATGATCAAACAACCGTTNGAGTAAAATGTCGGATAGTG
AAGACCTCAACGAGGATGAAGTTTTGATGATCAAACAACCGTTGACACCA
GCTCCTCGTCGCGTCACACAATCACCGTTTAAGAGGCTGACTAAAACAGG
TAGTTCattgaaacttcaaaatggtagctatCCGACGCGATATAGTACGC
GTCATGgcaacaacaataacaataacaacAGTGttacgaaaaataaaaat
gaaaagaagaagaatctCAAAAATAAGAAGAGCCAGCCAatcaaaaagaa
gaagattATTAGTGAAATCGATTGTACCGAAAGTGAAGTCAGTTTCGCTT
CTGAATTCCCCGATGACGCTATATCGAACGTTTCCTCGGAGCTTTACGAC
GAATCAATGCGTAGCTCTTCGCCTATGAGTGACGTTCCGTCTTTACGTTC
TGAGCAAGCAAGCATGGTCTCCGTTGATAGCACGTACGGAACTTCCGAGT
TCTCGTCCTTCAGCAGTGCTTCGAAAGCTAGCCGCGACTATATGTATGAT
TTTGAACGATTAGCAAATGTATTGGATCATATTGACGGAGAAGTATTAAA
AGAACAATTAAAGTCATGCTTAATGTCAAAGAAACCTCGAAATATTAAAA
CATTGAGTTCACTATTACCGGCGAGTAAATTCAGCGGTAAAACTACGCAT
TGTTTTCGGTGCCATAGTGAATATGACGAAAAGCACGGTTGCCGAACATG
TATAATACGTCATCCAAATTCGGAAGTTTTGTTAATATCAGAAGACGGTA
CAAACGCTGTTTTTCAATGTGAGCGTTGCGCATGCGTGTTCAAACTAGAC
AATAGTTTAGAGTATGATGAGCAGACCACTGACATTTCAAATTGCGGTGC
TTGTTACGTCGGTGAACATACTAGCAACTCTAAGAGTGTGGATTATTTAC
CCAACGGGGTAGCTAAGACTTGCACTGAAAAAGGTTGCGCTATTTTCTAC
GTATAATAATAGCtttatattttaactttttctagTAATGCTTACCTACT
TATATTTAATACTATACTTTAAAGTATTAAGCCATAGCATTTTTTTCTTC
CATGACTTTTcaattttagcatttttaaaaatactttttctcctttaatt
tatgcttattttatccttaattgttgatttttttgtaaaaagtaaaaaag
ttagTAAATTCGTGTACATATTAGAATTAAAGAATTTCCTCTAACATTCG
TTAAGCCTCCTGATTTGCAAAATTATGTCTGGTCATAGTTGTCTACTTCT
ACATTATTgtcaaatatttgattttgagaaTTTGGAGGTATTTTactgaa
atctgaaaatttgaattttctttttttttcttcattcgaATTTGGAGCAG
TCTTGAAGTCGCTCAAGAACAATCAAGCTTTGAATTTcccaaaatctaat
tttcaaatcaccgtacgtgaaatggattgcccaaaaatctataaattttg
atttcattttatttttcgtttGAATTTTGAGTAGTGTTGAAGTagagctc
aagaaaaatcaacctttgaatttctcaaaatcACCGTATGTGAAATGGAT
TGCTAAAAAATctatcaattttgattttatcttatttttcgTTTGAATTT
TGAGCAGTCTTGAAGTAGTTCAAGAAAATTCAAGCTTTGTATTTCTCAAA
ATCACCGTATGTGAAATGGATTGCtaaaaaatctataaattttgatttta
ttttatttttcgtttgatttttgagtagtcttgaagtagctcaagaaaaa
taaggttttgaatttcacaaaatttttattttcaaatcaccgtacgtgaA
ATGG
Run BLAST on NCBI

transcript from alignment at scaffold_289:94447..97234-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057470 ID=TCONS_00057470|Name=TCONS_00057470|organism=Clytia hemisphaerica|type=transcript|length=2788bp|location=Sequence derived from alignment at scaffold_289:94447..97234- (Clytia hemisphaerica)
AATTGATTGATTGATGTTTAGCTTTTGATCCTGGTATGAACAGAGCGACT
GTTCTTTTGATGTTTCTTTTGTTAAAAGACGGAACATTACAAGAAAATTT
AACTGTGTCCGATGGTGCTGTGTTTTGATGCAATTTTGTTGCATGCATTA
AAAACGTGAGAGCTTTTTAAAACACAATGTTTACGATTTTAGGAATGTGA
CTTTAATTCTTAAGATTTATCAAATGTTTTGGTCAATATTTAAAATACGT
ATATTAAGTGCGTAATAGCACTTTAAACTTAATACAGGGGGTCTTTCTTA
CAAACGCAAGAGGGTTTAATATAAGGCATTGGATTAGAATCATAACCTCG
TTAAAACCTATTATAAAACACAGCGTGATACTGCAGCAAAATCGTCAATG
CCTTTTCTTTAAAAAATATTTTCTACTCTCAATTTTTCTCTCTTCTACTA
CCTAATATTAAATTCTTTTCTATTGTTTTCTATTCTTAGTTTATCATTAA
AAAAAGACAATAGAAAAAAAATAATGAAATCAGCATCACGAACTATGGAC
TGGATGCGAACAGAACAAAAATACAAAATTGAGAGACGTCCACAGATTTC
CTGTTTCAATGCTCGCATCGATTTTCTGAACAACTTATCGGACGGAATTG
TCAAGAAGTTACCAAAGCAACGGAAGATCAGCAGTAGTAGTAGACAATTG
GAAATGCCATTACCTCCTGGGTGTTTCCCAGAGAAAGTTTCATTAGCCTT
GAGTAAATCATCAAACAGTTTATGCGAGTCTGATACTTCGTCTACTATTC
CGAATCGGGGTTTGAATACAATGTCAACGAACGTGGAATCTATCCCTGAA
ACTGATGTCGTTGCTATGGAGAGTCGAATTGATACCTGGTATGCTAGTCT
AAGTAAAATGTCGGATAATGAAGATCTGAACGAGGATGAAGTTTTGATGA
TCAAACAACCGTTNGAGTAAAATGTCGGATAGTGAAGACCTCAACGAGGA
TGAAGTTTTGATGATCAAACAACCGTTGACACCAGCTCCTCGTCGCGTCA
CACAATCACCGTTTAAGAGGCTGACTAAAACAGGTAGTTCATTGAAACTT
CAAAATGGTAGCTATCCGACGCGATATAGTACGCGTCATGGCAACAACAA
TAACAATAACAACAGTGTTACGAAAAATAAAAATGAAAAGAAGAAGAATC
TCAAAAATAAGAAGAGCCAGCCAATCAAAAAGAAGAAGATTATTAGTGAA
ATCGATTGTACCGAAAGTGAAGTCAGTTTCGCTTCTGAATTCCCCGATGA
CGCTATATCGAACGTTTCCTCGGAGCTTTACGACGAATCAATGCGTAGCT
CTTCGCCTATGAGTGACGTTCCGTCTTTACGTTCTGAGCAAGCAAGCATG
GTCTCCGTTGATAGCACGTACGGAACTTCCGAGTTCTCGTCCTTCAGCAG
TGCTTCGAAAGCTAGCCGCGACTATATGTATGATTTTGAACGATTAGCAA
ATGTATTGGATCATATTGACGGAGAAGTATTAAAAGAACAATTAAAGTCA
TGCTTAATGTCAAAGAAACCTCGAAATATTAAAACATTGAGTTCACTATT
ACCGGCGAGTAAATTCAGCGGTAAAACTACGCATTGTTTTCGGTGCCATA
GTGAATATGACGAAAAGCACGGTTGCCGAACATGTATAATACGTCATCCA
AATTCGGAAGTTTTGTTAATATCAGAAGACGGTACAAACGCTGTTTTTCA
ATGTGAGCGTTGCGCATGCGTGTTCAAACTAGACAATAGTTTAGAGTATG
ATGAGCAGACCACTGACATTTCAAATTGCGGTGCTTGTTACGTCGGTGAA
CATACTAGCAACTCTAAGAGTGTGGATTATTTACCCAACGGGGTAGCTAA
GACTTGCACTGAAAAAGGTTGCGCTATTTTCTACGTATAATAATAGCTTT
ATATTTTAACTTTTTCTAGTAATGCTTACCTACTTATATTTAATACTATA
CTTTAAAGTATTAAGCCATAGCATTTTTTTCTTCCATGACTTTTCAATTT
TAGCATTTTTAAAAATACTTTTTCTCCTTTAATTTATGCTTATTTTATCC
TTAATTGTTGATTTTTTTGTAAAAAGTAAAAAAGTTAGTAAATTCGTGTA
CATATTAGAATTAAAGAATTTCCTCTAACATTCGTTAAGCCTCCTGATTT
GCAAAATTATGTCTGGTCATAGTTGTCTACTTCTACATTATTGTCAAATA
TTTGATTTTGAGAATTTGGAGGTATTTTACTGAAATCTGAAAATTTGAAT
TTTCTTTTTTTTTCTTCATTCGAATTTGGAGCAGTCTTGAAGTCGCTCAA
GAACAATCAAGCTTTGAATTTCCCAAAATCTAATTTTCAAATCACCGTAC
GTGAAATGGATTGCCCAAAAATCTATAAATTTTGATTTCATTTTATTTTT
CGTTTGAATTTTGAGTAGTGTTGAAGTAGAGCTCAAGAAAAATCAACCTT
TGAATTTCTCAAAATCACCGTATGTGAAATGGATTGCTAAAAAATCTATC
AATTTTGATTTTATCTTATTTTTCGTTTGAATTTTGAGCAGTCTTGAAGT
AGTTCAAGAAAATTCAAGCTTTGTATTTCTCAAAATCACCGTATGTGAAA
TGGATTGCTAAAAAATCTATAAATTTTGATTTTATTTTATTTTTCGTTTG
ATTTTTGAGTAGTCTTGAAGTAGCTCAAGAAAAATAAGGTTTTGAATTTC
ACAAAATTTTTATTTTCAAATCACCGTACGTGAAATGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036217XLOC_036217Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057470-exon-scaffold_289-1575043694:97080..97234TCONS_00057470-exon-scaffold_289-1575043694:97080..97234Clytia hemisphaericaexon
TCONS_00057470-exon-scaffold_289-1575043694:94447..96745TCONS_00057470-exon-scaffold_289-1575043694:94447..96745Clytia hemisphaericaexon
TCONS_00057470-exon-scaffold_289-1510915933:97080..97234TCONS_00057470-exon-scaffold_289-1510915933:97080..97234Clytia hemisphaericaexon
TCONS_00057470-exon-scaffold_289-1510915933:94447..96745TCONS_00057470-exon-scaffold_289-1510915933:94447..96745Clytia hemisphaericaexon
TCONS_00057470-exon-scaffold_289-1491911889:97080..97234TCONS_00057470-exon-scaffold_289-1491911889:97080..97234Clytia hemisphaericaexon
TCONS_00057470-exon-scaffold_289-1491911889:94447..96745TCONS_00057470-exon-scaffold_289-1491911889:94447..96745Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_289supercontigscaffold_289:94447..97234 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.754802	0	0	2.85578	0.619783	3.57628	4.93689	0	0	0	0	1.13796	0.357445	0	0.581892	0	0	0	0	0.599953	0.451615	0.419972	0.781928	0	0.917552	0	0	0.498024	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057470 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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