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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057468 ID=TCONS_00057468|Name=TCONS_00057468|organism=Clytia hemisphaerica|type=transcript|length=1222bp
CCAAGTTCGACGTCCGCCACTTCAACCAGTAtttaaaaaagttcaaaact
cACCACTTGCTGTTTGGTTTTCGATCTACAGGTGAATTAGAATTACACCA
TCCAGTATACAAGTTCTTTCTGGGTGCTTTCTTTAACCATTCCACAAGCA
CCACTGGATTTACAAAAACATCATCATCCGTTTTCAAAACATAAGACGTT
TTACATTCATAAAAAGCCCATTTCAAACCAAGTTTTGTTTTCATGGTTAA
ATTTCGGTAATTTTCCATCATATTACCGAAAACAATATCTTTACTCAGTC
GAGATTCCTCCTTCAAAGATGAACTCAAATTTTCATCTTCCACGTTCGGT
TGTCCAATAACAAAAATTACACGAACAACATCTGAAGTGGAGTAGGTTTT
CCCATTGGGAAAAGGATGTTTccctttcaatttttgaaaatcatcttCGT
AACTGTGAGCCCAAGTGTCACGAATAAACCTCCGCCGTTCGACACTCTTA
GGTTGACTAATCaccaaaatggtcaaaaagaCTTCTTTTTCACAATAAGT
AGATTCCGCTAAAGGATCAGTCTCCCGTTCAAAATCGATAccttttttgg
tcaatttctgGAGATCATCAGGATCAGGATCCCGAACTCGAAACCGACGA
CTTAACTCACGCGTAAAATTTCCTTCACTCTCATCCGTTACCAAGTCATT
GTCTCTCTTAGTAGCTTCAGTAATCGGTTCTGGATTTAGAGATTCCTCCT
TATCGTGAGCATCTCGTTGCCTGTGAACTTCAGCATCATCTCCCACCATG
GATATATGAGTAGCCGGTAATTTGACACGTTTTAGAGCACCTGGTATAGG
GCGTTCTTCAAAATCATCAACATCGATACCAAAGCTTTCCAGCTCCTTCA
ATTCCTCTTCCATGGCATCCAATATGGCTTGTTCACTACTCAAATGTAGA
TCTGTGAACCTTTccatcatttttttattattaataGAGGCCATGTGTGC
ATATAAACGCTTTCTATACCAAAACCGATCATGTTTAATTACTTTTTGAC
GTGCAATTTTTGgagaagagaaaaatgtaaCCTCCACCACATAGAGAAAG
ACAATCAAAGAAATAACACCAATAACAAATTGTTGTCTCATGATCAATTT
GTCAGCGTCTGTGGTGGTACTGATATTTTCTgccttatttcatttttttt
gtttatgtttatttttttatct Run BLAST on NCBI transcript from alignment at scaffold_289:37883..43365- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057468 ID=TCONS_00057468|Name=TCONS_00057468|organism=Clytia hemisphaerica|type=transcript|length=5483bp|location=Sequence derived from alignment at scaffold_289:37883..43365- (Clytia hemisphaerica)
CCAAGTTCGACGTCCGCCACTTCAACCAGTATTTAAAAAAGTTCAAAACT
CACCACTTGCTGTTTGGTTTTCGATCTACAGGTGAATTAGAATTACACCA
TCCAGTATACAAGTTCTTTCTGGGTGCTTTCTTTAACCATTCCACAAGCA
CCACTGGATTTACAAAAACATCATCATCCGTTTTCAAAACATAAGACGTT
TTACATTCATAAAAAGCCCATTTCAAACCAAGTTTTGTTTTCATGGTTAA
ATTTCGGTAATTTTCCATCATATTACCGAAAACAATATCTTTACTCAGTC
GAGATTCCTCCTTCAAAGATGAACTCAAATTTTCATCTTCCACGTTCGGT
TGTCCAATAACAAAAATTACACGAACAACATCTGAAGTGGAGTAGGTTTT
CCCATTGGGAAAAGGATGTTTCCCTTTCAATTTTTGAAAATCATCTTCGT
AACTGTGAGCCCAAGTATCTCTAATGTTCCTACGTCGTTGAAAATTCTCA
GGTTTGCTGATCACCAAAACGGTTAAAAAGATTTCTTTTTCACAATAAGT
AGATTCCGGTAAAGGATCAGTCTCCTGTTCAAAATCGATACCTTTTTTGG
TCAATTTCTGAAGATTATCAGGATCAGGATTTCGGACTCCAAACCGACGA
CTCAACTCACGCGTAAAACTTAACTCATCATCTGGCGTATCTTTGGTAAC
TACGTAACCAGCGCCATATTGTCTCTGGGCATTCAAGCCTTCAGGATATT
TCGTTCGCAATTTATATATGGTGAATAGTAAGATTGCTGCTATGAAGAGC
AAAAATATTTTTTTCATTGCATCATAACGTTACTTTTTAGTTCATACTAA
ATACGAAATGAAATAGTGGCATGATGGAAAAAATTACCTTGTTTTGAAGG
AATCTCGATCGTTCACTCACCTTAGAGGCCTTTGACAAAGCAAAAACATT
TCACCAGTCAAGATTATTTTTATCTCTATTTTCTGAAAAAGAAAAAAAGC
ATATCAATTTTTAAAAGTTGGGGTTTATTGACAGTTGGAGAGAAAATGAA
CAAAAAATGATGTATTATACTACTTCATCCGACCTACAATCAAGGTCGAA
ATATATTTAGATGTGTATTTTATAAGTGTTTTTTAACATTTATCAGAATG
TAAAGTTTGGGCGAGAATTGCTATTTTTGCACTTCCACTTTCTTTCATTG
AATATTTCGATTTTGGAGGGGTTCGGTGGCTTCTAGGCTATATTCCAAGC
CTTATTGGAGCAAATTTGAGTTTTCAGATCCTGAGATCCTAAGGTCCTAG
TCTCATGTTGAAACTCATAGTTAAAACTCTACTTTCCAACTGTAGTTTAA
AGCGCTTAAAATCATTTGTGGTGTTTAAAATTTCGCAGGGAAATCCCCTT
TGTCTTAAATATTTTCCATGATTGTAGGTTTACAGCATCATGTCAATCAG
AGGGAATCGGAATTTCAAAATTAAATACAGGAATGTTTTCAAACAAATAT
CTGTCGAGAAAAGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGGCACTTCCACT
TTCTTTCATTGAATATTTCGATTTTGGAGGGGTTCGGTGGCTTCTAGGCT
ATATTCCAAGCCTTATTGGAGCAAATTTGAGTTTTCAGATCCTGAGATCC
TAAGGTCATAGTCTCATGTTGAAACTCATAGTTAAAACTCTACTTTCCAA
CTGTAGTTTAAAGCGCTTAAAATCATTTGTGGTGTTTAAAATTCCGCAGG
GAAATCCCCTTTGTCTTAAATATTTTCCATGATTGTAGGTTTACAGCATC
ATGTCAATCAGAGGGAATCGGAATTTCAAAATTAAATACAGGAATGTATT
CAAACAAATATCTGTCGAGAAAAGTGTATGACACAATAAAGTTTCTTCTG
TAAATTCTCACATAAATATCTATGATATCTTGATAAATAATCTTTCATAA
CAATTTCGTGGTTATTTGGTTCTAAAAATTTGGTAAAAATTCGAAAATTG
GATACTTTGATTTATACTAATAAAGCTATAATATATATATGTAAATATAC
TAAATCTCCACAACATGTTGTTTCGTTTATATAAATTTTATACATATTAT
AATGTCTTGGGTTGGGTAAAATTCTTTTTCAAAAGACCAAAAAAACAATA
GTTGGCAATAAGACACACAAAAAGCAAAGCTGAAAAAAGATAAAGCATTT
GACATCGCATTCAAACAAAAAAAAACAGGTACATAAAAACAGCATACAAA
TAATATAAAAAGTATGTCCGAAATCGAAAAATAAGTCAAAAACATAAAAA
ACATACGGTAAAAACTTAAAAAAACATTAAAAGATAATTAAAAAACCTTA
AAATTACAAAAAATAACCAACTCCTAAGTCCCCATTACTGTTCAACGCAA
GCGGAAGATCTGCATCAAAGTAAATTTTGGGATTTCACTGATTGAATACA
TCTATAGAGCTATGGAAAAAAGGTCTTTCAATATATTTGTAATATATAGC
AAAATCAGGGAGAAAACTGAAATAATAATACTATAATCAACAATTCTCTA
GCGCATTTCTAGATTGATTGATGTGTTTGACAAGGTTTTGACCAAGTACC
CTATGCAACAAAAATATAGAGTTCAAATCACAACTATTTTCAGTCTTCCC
ATTATAAACAAGATTGAAATGTTTCCTTTCGTCTCTCGGTTGAACTCCAT
CTAACTCTCTGATCATCAAACCAACGTATAAATCTTCCATAGGAAACAAA
AAACGACCGTAAGATAGTTTGATTACAGATGCTAACACATCAGAGGAAAT
AAGATAGCCCCCGCCGAGACAATATCCAGGGTACTTCTCTTCCTTGTAAT
CTTCATATGAAATATACCTGAAAGTGAGAAGAAATATCATAACGATTAGG
AAGATTAAAGACAACAATTTTAATGATAAACAAAAGCAAGCGCACAACTT
ATGCTGACTAAACAGGTTTTCCAATTTTGTTCACCCGGAGGAAGTCGTTC
TTCTTTTGTTTTAAAATGCCGTGCAAGAAATGCACGATGCTACATAAGTT
ATAAGCAAGTTATATTACGTAATGACTTTCGATTTTCAATTTGTAACTCA
GAACCTAATTCGAGAAGAATTCAGTCGAAAAAGGCCATAATGAGGTATTT
TCAACTTGAAAGGATTTTATATTCAAATTCTAATATTCTTGAAAGCATTC
TAAAACAGAGAGCCAACCTTTCTCTCAGTGAGTGAGCTAGTGAGCGAAAA
CAATAAAAAAGTGAATAAGAAGAAACATCATACCACTTATTGCGCTTATC
CCTTACAACAGGTGAATTNAATACTATAATCAACAATTCTCTAGCGCATT
TCTAGATTGATTGATGTGTTTGACAAGGTTTTGACCAAGTACCCTATGCA
ACAAAAATATAGAGTTCAAATCACAACTATTTTCAGTCTTCCCATTATAA
ACAAGATTGAAATGTTTCCTTTCGTCTCTCGGTTGAACTCCATCTAACTC
TCTGATCATCAAACCAACGTATAAATCTTCCATAGGAAACAAAAAACGAC
CGTAAGATAGTTTGATTACAGATGCTAACACATCAGAGGAAATAAGATAG
CCCCCGCCGAGACAATATCCAGGGTACTTCTCTTCCTTGTAATCTTCATA
TGAAATATACCTGAAAGTGAGAAGAAATATCATAACGATTAGGAAGATTA
AAGACAATAATTTTAGTGATAAACAAAAGCAAGCGCACAACTTATGCTGA
CTAAACAGGTTTTCCGATTGTGTTCACCCGGAGGAAGTCGTTCTTCTTTT
GTTTTAAAATGCCGTGCAAGAAATAAGCAAGTTATATTACGGTAATGACT
TTCGATTTTCAAATTGTAACTCAGAACCTAATTCGAGAAGAATTTCGTCG
AAAAAGGCCATAATGAGCTAATGAGGTATTTTCAACTTGAAAGGATTTTA
TATTCTAATTCTAATATTCTTGAAAGCATTCTAAAACAGAGAGCCAACCT
TTCTCTTAGTGAGTGAGCTAGTGAGCGAAAACAATAAAAAAGTGAATAAG
AAGAAACATCATACCACTTATTGCGCTTATCCCTTACAACAGGTGAATTG
AAGTTACACCATCCAGTATACAAGTTCGTTTTCGGGATCTCTTTCAACCA
TTCCACCAGCACCACTGGATTTACAAAAACATCATCATCCGTTTTCAAAA
CATAAGACGTTTTACATTCATAAAAAGCCCATTTCAAACCAAGTTTTGTT
TTCGTGGTTAAATTTCGGTAATTCTCCATCATACTACCAAAAACAATATC
TTTGTTCATTCGAGATTCTTCTTTGACTGATTGCATTACTTTGGTATCAG
TTTGCGCTGACTGACCCACAACGAAAACTACACGTACAACATCTGAAGTG
GAATAGGTTTTCCCATTAGGGAAAGGCTGTTTCCCTTTGAGCTTTCTAAA
ATCCTCTTGGTAGCTTCGAGCCCAGGTGTCACGAATAAACCTCCGCCGTT
CGACACTCTTAGGTTGACTAATCACCAAAATGGTCAAAAAGACTTCTTTT
TCACAATAAGTAGATTCCGCTAAAGGATCAGTCTCCCGTTCAAAATCGAT
ACCTTTTTTGGTCAATTTCTGGAGATCATCAGGATCAGGATCCCGAACTC
GAAACCGACGACTTAACTCACGCGTAAAATTTCCTTCACTCTCATCCGTT
ACCAAGTCATTGTCTCTCTTAGTAGCTTCAGTAATCGGTTCTGGATTTAG
AGATTCCTCCTTATCGTGAGCATCTCGTTGCCTGTGAACTTCAGCATCAT
CTCCCACCATGGATATATGAGTAGCCGGTAATTTGACACGTTTTAGAGCA
CCTGGTATAGGGCGTTCTTCAAAATCATCAACATCGATACCAAAGCTTTC
CAGCTCCTTCAATTCCTCTTCCATGGCATCCAATATGGCTTGTTCACTAC
TCAAATGTAGATCTGTGAACCTTTCCATCATTTTTTTATTATTAATAGAG
GCCATGTGTGCATATAAACGCTTTCTATACCAAAACCGATCATGTTTAAT
TACTTTTTGACGTGCAATTTTTGGAGAAGAGAAAAATGTAACCTCCACCA
CATAGAGAAAGACAATCAAAGAAATAACACCAATAACAAATTGTTGTCTC
ATGATCAATTTGTCAGCGTCTGTGGTGGTACTGATATTTTCTGCCTTATT
TCATTTTTTTTGTTTATGTTTATTTTTTTATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057468-exon-scaffold_289-1575043694:42902..43365 | TCONS_00057468-exon-scaffold_289-1575043694:42902..43365 | Clytia hemisphaerica | exon |
| TCONS_00057468-exon-scaffold_289-1575043694:37883..38640 | TCONS_00057468-exon-scaffold_289-1575043694:37883..38640 | Clytia hemisphaerica | exon |
| TCONS_00057468-exon-scaffold_289-1510915933:42902..43365 | TCONS_00057468-exon-scaffold_289-1510915933:42902..43365 | Clytia hemisphaerica | exon |
| TCONS_00057468-exon-scaffold_289-1510915933:37883..38640 | TCONS_00057468-exon-scaffold_289-1510915933:37883..38640 | Clytia hemisphaerica | exon |
| TCONS_00057468-exon-scaffold_289-1491911889:42902..43365 | TCONS_00057468-exon-scaffold_289-1491911889:42902..43365 | Clytia hemisphaerica | exon |
| TCONS_00057468-exon-scaffold_289-1491911889:37883..38640 | TCONS_00057468-exon-scaffold_289-1491911889:37883..38640 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_289 | supercontig | scaffold_289:37883..43365 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002659 | Glyco_trans_31 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008378 | galactosyltransferase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006486 | protein glycosylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006486 |
protein glycosylation |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0008378 |
galactosyltransferase activity |
Blast
The following BLAST results are available for this feature:
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