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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057464 ID=TCONS_00057464|Name=TCONS_00057464|organism=Clytia hemisphaerica|type=transcript|length=749bp
GTTATAGACCATTACTAAAATAATGGCAGGAATAGCAAAAGAGTTTCTAA
AGGTACTAGAAGATCGTAACAAAGAGAATGGAGATGAAGTtcaggaaaaa
aaagaaaaagaagaaagaaaagtcaTTGGATGAACTTCTAAAATCGCTCC
CTATTAACAAAGCACAACAACTAGAAAACAGAAGCAACCACAGGATGTAT
GGTATAGATTTAATGGCCCCTCTAAGAGATCTAGCTCTTCAACAAGTTCT
TGCTCCAAAAGAAAGTACaaacaaatatcaaaacctgACATTGAACATTT
TGATACTGAGCATTTTGAAGAAATGGACAGTGAAAGCTCCCTGGACATTC
ATAATGATGTAAAAGACATAGGAAAAGAAGATCTTCTAAAGGCATTAGAA
GAAGCTGAAATAATGATCGGTGACAAACCAAAACGAAGTTGGCAAAAAAG
AACAGAAAGCAATGAGAAAAAATGATTAGAGGCGAAAGACGAGTTGTTGA
AGcaagttatttttaaacaagaaaaaacaaCCTTCTGCTTTAATTGTGGC
AAAGACAAGGCTGAAATTAGATGCTTTTCGTGAACACCAATGCTGTTTCT
ATGCTCAACTTGTGACACTGAGGTGCATCAAATGAAGGGCTTTCATGATC
GTCAATGATTTGATGGCTTTTATAAACCTTTAAGTCCAAGAGAGCATATT
GTTAATGGACAGATTGTAGCAACAGGTAGTTGTAGACAAATAATGCTTT Run BLAST on NCBI transcript from alignment at scaffold_289:393311..394684+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057464 ID=TCONS_00057464|Name=TCONS_00057464|organism=Clytia hemisphaerica|type=transcript|length=1374bp|location=Sequence derived from alignment at scaffold_289:393311..394684+ (Clytia hemisphaerica)
GTTATAGACCATTACTAAAATAATGGCAGGAATAGCAAAAGAGTTTCTAA
AGGTACTAGAAGATCGTAACAAAGAGAATGGAGATGAAGTtcaggaaaaa
aaagaaaaagaagaaagaaaagtcaTTGGATGAACTTCTAAAATCGCTCC
CTATTAACAAAGCACAACAACTAGAAAACAGAAGCAACCACAGGATGTAT
GGTATAGATTTAATGGCCCCTCTAAGAGATCTAGCTCTTCAACAAGTTCT
TGCTCCAAAAGAAAGTACaaacaaatatcaaaacctggtaAGAGATTATA
TTTAATTtcatcttaaaaatgattgcAAACATATAAACAGAGTTTTTAAT
ATTGTAGAATAATGTTGTTTACATCTACAAGATGTAACTTATGCAATGTA
AACATGAAATGGTGTAAATAGTATGTATCTCTATTAGTGTAAGAGAAttt
aaaaagctttcaaaatcTTCTTGACGATCTGAGAAAATTCaggtatcaaa
ataaaaataatattgcCTGAAGATGGATCTTCTCTTGTTCCATCAGTAGT
gttaaaattttgtcaaattttctgtAACTGTAACAGCTACCTATGCTAAA
TCCCTTTCAGTATTTTTCCGTTTAAACTTATTCAACAGACATTGAACATT
TTGATACTGAGCATTTTGAAGAAATGGACAGTGAAAGCTCCCTGGACATT
CATAATGATGTAAAAGACATAGGAAAAGAAGGTATATATACGTTGGGGTT
AAAGTAAATGTAAATTATTTATGGAtacaaaaactaaattttggaGTATT
TATGTTTTAGACAAAACCAAATATTGGCACAAATTATGTTCGTTATAAAT
TCGATTCgattaaagatttgaaaaaagaagaaaaaagttaaacagattct
ttcaatttcttctcttctttgcaacaaaatgtttaattttctgttttctt
caaaaaatagttcaaaaatattttaatatgtTAAaatatgtttacatttt
tccaGATCTTCTAAAGGCATTAGAAGAAGCTGAAATAATGATCGGTGACA
AACCAAAACGAAGTTGGCAAAAAAGAACAGAAAGCAATGAGAAAAAATGA
TTAGAGGCGAAAGACGAGTTGTTGAAGcaagttatttttaaacaagaaaa
aacaaCCTTCTGCTTTAATTGTGGCAAAGACAAGGCTGAAATTAGATGCT
TTTCGTGAACACCAATGCTGTTTCTATGCTCAACTTGTGACACTGAGGTG
CATCAAATGAAGGGCTTTCATGATCGTCAATGATTTGATGGCTTTTATAA
ACCTTTAAGTCCAAGAGAGCATATTGTTAATGGACAGATTGTAGCAACAG
GTAGTTGTAGACAAATAATGCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057464-exon-scaffold_289-1491911889:393311..393597 | TCONS_00057464-exon-scaffold_289-1491911889:393311..393597 | Clytia hemisphaerica | exon |
| TCONS_00057464-exon-scaffold_289-1510915933:393311..393597 | TCONS_00057464-exon-scaffold_289-1510915933:393311..393597 | Clytia hemisphaerica | exon |
| TCONS_00057464-exon-scaffold_289-1575043694:393311..393597 | TCONS_00057464-exon-scaffold_289-1575043694:393311..393597 | Clytia hemisphaerica | exon |
| TCONS_00057464-exon-scaffold_289-1491911889:393949..394041 | TCONS_00057464-exon-scaffold_289-1491911889:393949..394041 | Clytia hemisphaerica | exon |
| TCONS_00057464-exon-scaffold_289-1510915933:393949..394041 | TCONS_00057464-exon-scaffold_289-1510915933:393949..394041 | Clytia hemisphaerica | exon |
| TCONS_00057464-exon-scaffold_289-1575043694:393949..394041 | TCONS_00057464-exon-scaffold_289-1575043694:393949..394041 | Clytia hemisphaerica | exon |
| TCONS_00057464-exon-scaffold_289-1491911889:394316..394684 | TCONS_00057464-exon-scaffold_289-1491911889:394316..394684 | Clytia hemisphaerica | exon |
| TCONS_00057464-exon-scaffold_289-1510915933:394316..394684 | TCONS_00057464-exon-scaffold_289-1510915933:394316..394684 | Clytia hemisphaerica | exon |
| TCONS_00057464-exon-scaffold_289-1575043694:394316..394684 | TCONS_00057464-exon-scaffold_289-1575043694:394316..394684 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_289 | supercontig | scaffold_289:393311..394684 + |
Blast
The following BLAST results are available for this feature:
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