TCONS_00057461 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057461
Unique NameTCONS_00057461
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1340

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057461 ID=TCONS_00057461|Name=TCONS_00057461|organism=Clytia hemisphaerica|type=transcript|length=1340bp
CTTTGAATTAATTCACGTTACTTCATCACGTTACTTCGTCACAGTATCTT
CTATATTTCACAAGAGCGCTCCTAGGCTAGCGAGTACCTTATTCTATTCC
TTGATGAATTTCATTTAGACCTCAGAAGAGAGACTACTGCATGGAGATGA
CGTCTATCATCTTTTTAATGTACcgcaaaaacttcaaaagttgAAAGTGA
CGTCTTCTTATGCCCGAGAACATCTCCCGCGTGTAAAGTTTTTGCGNCTC
AAAAGAGAGACTACTGCATTGAGATGACGTCTATCATCTTTTTAATGTac
cacaaaaacttcaaaagttgAAAGTGACGTCTTCTTATGCCCAAGAACAT
CTCCCCCGTGTAAAGTTTTTGCACACTGTCAAGATTTGATAGTTGTTATC
AATCAATAATTCGAATTGAATTAGAGAGGGTAACCAATGACCATTATAAA
ACTTGGACTATGCTATATCCACGTTTTTTAGAAAAGtagtaccctaatgg
tagcactacttgAATTGGAGTTTTTAGAAAAGTGGGACCTTAATTGTAGC
ACTACTCACGGTGGGTCAATTTGTAGTTCAAGGAAAATTTGCGAGAAGTG
GTAACAATCAGGGGGTACCACTATCAAAACACTCCGATTAAATATTCTGT
TAGACAAGGATCGAGAAAATACCACCCGGGACTATATAGAGCTCAGCGGC
GGATTGAACGCGTTACGTAGCAGTGTTTAAGTTACAGAGAGGGAAAGGTA
GTCGACACGACTGTATTGTTGTTATTAAATCAAATGTTACTTTTATTCTT
ATTATCGTATTTAAATAGTGCTTTAGTCTGTATGTACATTATATACAAAA
TAATTTAACCCCACGTGCATCTTGGAAAAATTTCCTCGAGCTCCATCAAA
ATTTGAGGAGACACCAATAGTTTATCAGAGTTGATTTTTGCCAACTTCTG
GTATCCTGTATTCTAAAGACCGGCTCCAAATTACCCTTTTTGCCTAAAAT
GATAAAACTTACAAAAAAACTTATTATCATATTTACATAGTGCTTTAGTC
TGTGTGTACATTATTATACAAAGTAATTTAACCCCACGTGCATCTTGGAA
AAAATTTCCTCAAGCTCCACCAGAATTTGAAGAATAGTTGATGAAAGTCC
ATTTTTGCAAACTGCTGGTATCCTGAATTCTAAAGACCGGCTCCAAATTa
ccctttttgcctaaactgaTAAAAACTTATTATCATATTTACACAATTTT
TTAGTCTGTATGTACATTAATACAAATTAATTTAACCCCACGTGCATCTT
GGAAAAATTTCCTCGAGCTCCACCAGAATTTGAGGAATAG
Run BLAST on NCBI

transcript from alignment at scaffold_289:282384..283938+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057461 ID=TCONS_00057461|Name=TCONS_00057461|organism=Clytia hemisphaerica|type=transcript|length=1555bp|location=Sequence derived from alignment at scaffold_289:282384..283938+ (Clytia hemisphaerica)
CTTTGAATTAATTCACGTTACTTCATCACGTTACTTCGTCACAGTATCTT
CTATATTTCACAAGAGCGCTCCTAGGCTAGCGAGTACCTTATTCTATTCC
TTGATGAATTTCATTTAGACCTCAGAAGAGAGACTACTGCATGGAGATGA
CGTCTATCATCTTTTTAATGTACcgcaaaaacttcaaaagttgAAAGTGA
CGTCTTCTTATGCCCGAGAACATCTCCCGCGTGTAAAGTTTTTGCGNCTC
AAAAGAGAGACTACTGCATTGAGATGACGTCTATCATCTTTTTAATGTac
cacaaaaacttcaaaagttgAAAGTGACGTCTTCTTATGCCCAAGAACAT
CTCCCCCGTGTAAAGTTTTTGCACACTGTCAAGATTTGATAGTTGTTATC
AATCAATAATTCGAATTGAATTAGAGAGGGTAACCAATGACCATTATAAA
ACTTGGACTATGCTATATCCACGTTTTTTAGAAAAGtagtaccctaatgg
tagcactacttgAATTGGAGTTTTTAGAAAAGTGGGACCTTAATTGTAGC
ACTACTCACGGTGGGTCAATTTGTAGTTCAAGGAAAATTTGCGAGAAGTG
GTAACAATCAGGGGGTACCACTATCAAAACACTCCGATTAAATATTCTGT
TAGACAAGGATCGAGAAAATACCACCCGGGACTATATAGAGCTCAGCGGC
GGATTGAACGCGTTACGTAGCAGTGTTTAAGTTACAGAGAGGGAAAGGTA
GTCGACACGACTGTATTGTTGTTATTAAATCAAATGTTACTTTTATTCTT
ATTATCGTATTTAAATAGTGCTTTAGTCTGTATGTACATTATATACAAAA
TAATTTAACCCCACGTGCATCTTGGAAAAATTTCCTCGAGCTCCATCAAA
ATTTGAGGAGACACCAATAGTTTATCAGAGTTGATTTTTGCCAACTTCTG
GTATCCTGTATTCTAAAGACCGGCTCCAAATTACCCTTTTTGCCTAAAAT
GATAAAACTTACAAAAAAACTTATTATCATATTTACATAGTGCTTTAGTC
TGTGTGTACATTATTATACAAAGTAATTTAACCCCACATGCGTCTTGGAA
AAAATTTCCTCAAGTTCCACCAGAATTTGAGGAATAGTTGATGAAAGTCC
ATTTTTGCAAACTGCTGGTATCCTGTATTCTAAAGACCGGCTCCAAATTa
ccctttttgcctaaactgaTAAAACTTACAATAAAACTTATTATCATATT
TACACAATTCTTTAGTCTGTATGTACATTAATACAAATTAATTTAACCCC
ACGTGCATCTTGGAAAAAATTTCCTCAAGCTCCACCAGAATTTGAAGAAT
AGTTGATGAAAGTCCATTTTTGCAAACTGCTGGTATCCTGAATTCTAAAG
ACCGGCTCCAAATTaccctttttgcctaaactgaTAAAAACTTATTATCA
TATTTACACAATTTTTTAGTCTGTATGTACATTAATACAAATTAATTTAA
CCCCACGTGCATCTTGGAAAAATTTCCTCGAGCTCCACCAGAATTTGAGG
AATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036211XLOC_036211Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057461-exon-scaffold_289-1491911889:282384..283470TCONS_00057461-exon-scaffold_289-1491911889:282384..283470Clytia hemisphaericaexon
TCONS_00057461-exon-scaffold_289-1510915933:282384..283470TCONS_00057461-exon-scaffold_289-1510915933:282384..283470Clytia hemisphaericaexon
TCONS_00057461-exon-scaffold_289-1575043694:282384..283470TCONS_00057461-exon-scaffold_289-1575043694:282384..283470Clytia hemisphaericaexon
TCONS_00057461-exon-scaffold_289-1491911889:283686..283938TCONS_00057461-exon-scaffold_289-1491911889:283686..283938Clytia hemisphaericaexon
TCONS_00057461-exon-scaffold_289-1510915933:283686..283938TCONS_00057461-exon-scaffold_289-1510915933:283686..283938Clytia hemisphaericaexon
TCONS_00057461-exon-scaffold_289-1575043694:283686..283938TCONS_00057461-exon-scaffold_289-1575043694:283686..283938Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_289supercontigscaffold_289:282384..283938 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0313685	0.122357	0.071034	0	0.126906	0.0334277	0.365059	0.416985	0.477887	0	0	0.095878	0	0	0.0178121	0	0	0.0482723	0.0333454	0.0348935	0.0303288	0	0	0	0	0	0	0.215593	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057461 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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