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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057434 ID=TCONS_00057434|Name=TCONS_00057434|organism=Clytia hemisphaerica|type=transcript|length=2191bp
Ntccagcagacttttttctttagttcggtaagaacagaccgccatatcca
gctggaacgtgccttcagaacagatattttgaagtcctccttcggtggat
gctttcggtTTTACATGCAATAATGTTGATATGGTGTAAAGTAATAATTG
ATTGGAAAAtcgtaattttattttaaataaaatattatttttgtaatttt
ttagaaTAGTCTGGATCTTTCTCTGTAACCTTAGCTCTTGGAGCTACGAG
TATAGCTCAGTATCAAAAAATAGAGTAGTTTACAAAATGTCTACGCACAT
AAAAATTATTCGAAACAAGTTTTTCCTTTACAGACTGTCCTTAGATACTG
ACTTCATTTTCAAATAGTCTTGCTTAGCAGTGCTAAGGTCTCAAATATTT
GATACATTTTTGCTTTAGAAAGGATAACAGCCTTCTTCATTTCTTAGTAA
GCATCCTAAATTTTATCGAGTATCGTAACTTTCTATGCATCAACATAATA
TTCTTGACGTCTGCGTTAGATGAATAATAATTGTCTTTAAGACAAATTGT
TGTCAATTTTCTACGAATATAAACTAATTAGTTGTTGACTCATCAAAAAA
CCTTGTGATACTCTGACCTCAACTCTCGTGGGGAATGATGCATATTACAC
AGGCGGAAATGAGATAATTAAAAGGGTATTTAGAAGTATAAGAATTAATA
ATCTTTCTACCTATCATATAAATATTCTTCACACAAACaatgaattaaaa
atttgtttttaaaaaaatttcttcctaagaaaatttaatattaaaattat
gaaaattaaaattttattatgtaATTTAGCTTATATACAAACGGATACTT
TTCTACGatgatttgaaattatttttgtgtttttttttgtttagaatatt
tgaaagttttaatgaatttcttagATATTTTGAGATTCTGTTCCTTTGAC
TCCGAATTTTCTCTTTATCTTGACAAGAGCTTGCATGCTCTTGGATTTGA
AGGtccaatgaaaatgttgatgaatattttaaaatttggccTATAATTAA
ATTTAGTAAAACTACAGATAcatatttacatttttacaaGATCACAAACC
ACCCCATGTTCAAATCATGTTCTCATTTCgttcaatttcttttcaaatgg
tgccagaatcaaatcaatattcGTGTAATTTCTTCGGTCAGTGATTTTCT
GTCCGTTCAAAAACTCAACCAGCGGTGAATTCTCCGCATTATGTATAACC
GCATCTACACCCTCCTCCTCATTGATATATTCGTAAACATGCTCTCCCCC
CTCATCGTCATCATACTGCCCAAACATTTCCTCATAAAATCCTTGCTCCT
CATTATTTCCACACAACGATGCATTGAAATCATTATTCTTCCATTTAAAC
CCATCTTCATTTTCGTATAAAGAACTATCCATTTTCTCCAAATTGTTATT
TCTACACTTCAAATACATATTCTCATTTTCATTCTCATAGAAAGAGTCAT
TCGAATTGTCGTCTGTATATTTCGCGTTGTCAATACCTTCAGTGAGATCA
CATAGATTCCAACTTGATTCCATgtaaaatttttcttcttcggGAATGGT
GTATAAAAGCCTGTAATGGCTCTCTTTATCTGAATCCTGAAACATTGGGA
ATGAACCCATGTGTTGATCTATCTCTTCATATTCGGAGTCGTCCGGCGAT
TTGATACCTCGTGTCAGATCTATGTCGAAAGAGTCGAAACAACAGCCGTA
CCTCTTACGCTGGTCTTGGACGACGTTTGTATTCTTAGCACGTCTTTTGA
CTTTCTTTACACGACGTGCTGCAAGCCGTTGCCGTTCTACGTTGTGGGAT
GGAGAGACGTTCGGTGTTGATAAGCTTCGTTTGCGAAGGATTTTTCCACA
CGATTCTGTAAAAGCGTGTGATTTTTCTTCCattaatttgattttctttg
ctGTGTTCCCTTCGCAAATAGAACTGAAACTTTTGGCTTGCCTTGGCTGC
CCGTTCatctttaaaggttttcttgTCTAAAAATTTTGCTGCGCTCTGTC
AAATACTGCTTGTTATTATGGTGTTAGTTAGAGTAATACTGACcttcatt
tgtttatttataTCTCAATAAAAAGCTGCCATTTTTGAatatgtgacgtc
ataatcttTCTTTAAGTGATCTCATTACCGCCCTGATTGTG Run BLAST on NCBI protein sequence of TCONS_00057434-protein >TCONS_00057434-protein ID=TCONS_00057434-protein|Name=TCONS_00057434-protein|organism=Clytia hemisphaerica|type=polypeptide|length=297bp
MNGQPRQAKSFSSICEGNTAKKIKLMEEKSHAFTESCGKILRKRSLSTPN
VSPSHNVERQRLAARRVKKVKRRAKNTNVVQDQRKRYGCCFDSFDIDLTR
GIKSPDDSEYEEIDQHMGSFPMFQDSDKESHYRLLYTIPEEEKFYMESSW
NLCDLTEGIDNAKYTDDNSNDSFYENENENMYLKCRNNNLEKMDSSLYEN
EDGFKWKNNDFNASLCGNNEEQGFYEEMFGQYDDDEGGEHVYEYINEEEG
VDAVIHNAENSPLVEFLNGQKITDRRNYTNIDLILAPFEKKLNEMRT Run BLAST on NCBI transcript from alignment at scaffold_288:463387..465577 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057434 ID=TCONS_00057434|Name=TCONS_00057434|organism=Clytia hemisphaerica|type=transcript|length=2191bp|location=Sequence derived from alignment at scaffold_288:463387..465577 (Clytia hemisphaerica)
CACAATCAGGGCGGTAATGAGATCACTTAAAGAaagattatgacgtcaca
tatTCAAAAATGGCAGCTTTTTATTGAGAtataaataaacaaatgaagGT
CAGTATTACTCTAACTAACACCATAATAACAAGCAGTATTTGACAGAGCG
CAGCAAAATTTTTAGAcaagaaaacctttaaagatGAACGGGCAGCCAAG
GCAAGCCAAAAGTTTCAGTTCTATTTGCGAAGGGAACACagcaaagaaaa
tcaaattaatGGAAGAAAAATCACACGCTTTTACAGAATCGTGTGGAAAA
ATCCTTCGCAAACGAAGCTTATCAACACCGAACGTCTCTCCATCCCACAA
CGTAGAACGGCAACGGCTTGCAGCACGTCGTGTAAAGAAAGTCAAAAGAC
GTGCTAAGAATACAAACGTCGTCCAAGACCAGCGTAAGAGGTACGGCTGT
TGTTTCGACTCTTTCGACATAGATCTGACACGAGGTATCAAATCGCCGGA
CGACTCCGAATATGAAGAGATAGATCAACACATGGGTTCATTCCCAATGT
TTCAGGATTCAGATAAAGAGAGCCATTACAGGCTTTTATACACCATTCcc
gaagaagaaaaattttacATGGAATCAAGTTGGAATCTATGTGATCTCAC
TGAAGGTATTGACAACGCGAAATATACAGACGACAATTCGAATGACTCTT
TCTATGAGAATGAAAATGAGAATATGTATTTGAAGTGTAGAAATAACAAT
TTGGAGAAAATGGATAGTTCTTTATACGAAAATGAAGATGGGTTTAAATG
GAAGAATAATGATTTCAATGCATCGTTGTGTGGAAATAATGAGGAGCAAG
GATTTTATGAGGAAATGTTTGGGCAGTATGATGACGATGAGGGGGGAGAG
CATGTTTACGAATATATCAATGAGGAGGAGGGTGTAGATGCGGTTATACA
TAATGCGGAGAATTCACCGCTGGTTGAGTTTTTGAACGGACAGAAAATCA
CTGACCGAAGAAATTACACgaatattgatttgattctggcaccatttgaa
aagaaattgaacGAAATGAGAACATGATTTGAACATGGGGTGGTTTGTGA
TCttgtaaaaatgtaaatatgTATCTGTAGTTTTACTAAATTTAATTATA
ggccaaattttaaaatattcatcaacattttcattggaCCTTCAAATCCA
AGAGCATGCAAGCTCTTGTCAAGATAAAGAGAAAATTCGGAGTCAAAGGA
ACAGAATCTCAAAATATctaagaaattcattaaaactttcaaatattcta
aacaaaaaaaaacacaaaaataatttcaaatcatCGTAGAAAAGTATCCG
TTTGTATATAAGCTAAATtacataataaaattttaattttcataatttta
atattaaattttcttaggaagaaatttttttaaaaacaaatttttaattc
attGTTTGTGTGAAGAATATTTATATGATAGGTAGAAAGATTATTAATTC
TTATACTTCTAAATACCCTTTTAATTATCTCATTTCCGCCTGTGTAATAT
GCATCATTCCCCACGAGAGTTGAGGTCAGAGTATCACAAGGTTTTTTGAT
GAGTCAACAACTAATTAGTTTATATTCGTAGAAAATTGACAACAATTTGT
CTTAAAGACAATTATTATTCATCTAACGCAGACGTCAAGAATATTATGTT
GATGCATAGAAAGTTACGATACTCGATAAAATTTAGGATGCTTACTAAGA
AATGAAGAAGGCTGTTATCCTTTCTAAAGCAAAAATGTATCAAATATTTG
AGACCTTAGCACTGCTAAGCAAGACTATTTGAAAATGAAGTCAGTATCTA
AGGACAGTCTGTAAAGGAAAAACTTGTTTCGAATAATTTTTATGTGCGTA
GACATTTTGTAAACTACTCTATTTTTTGATACTGAGCTATACTCGTAGCT
CCAAGAGCTAAGGTTACAGAGAAAGATCCAGACTAttctaaaaaattaca
aaaataatattttatttaaaataaaattacgaTTTTCCAATCAATTATTA
CTTTACACCATATCAACATTATTGCATGTAAAaccgaaagcatccaccga
aggaggacttcaaaatatctgttctgaaggcacgttccagctggatatgg
cggtctgttcttaccgaactaaagaaaaaagtctgctggaN Coding sequence (CDS) from alignment at scaffold_288:463387..465577 >TCONS_00057434 ID=TCONS_00057434|Name=TCONS_00057434|organism=Clytia hemisphaerica|type=CDS|length=894bp|location=Sequence derived from alignment at scaffold_288:463387..465577 (Clytia hemisphaerica)
atGAACGGGCAGCCAAGGCAAGCCAAAAGTTTCAGTTCTATTTGCGAAGG
GAACACagcaaagaaaatcaaattaatGGAAGAAAAATCACACGCTTTTA
CAGAATCGTGTGGAAAAATCCTTCGCAAACGAAGCTTATCAACACCGAAC
GTCTCTCCATCCCACAACGTAGAACGGCAACGGCTTGCAGCACGTCGTGT
AAAGAAAGTCAAAAGACGTGCTAAGAATACAAACGTCGTCCAAGACCAGC
GTAAGAGGTACGGCTGTTGTTTCGACTCTTTCGACATAGATCTGACACGA
GGTATCAAATCGCCGGACGACTCCGAATATGAAGAGATAGATCAACACAT
GGGTTCATTCCCAATGTTTCAGGATTCAGATAAAGAGAGCCATTACAGGC
TTTTATACACCATTCccgaagaagaaaaattttacATGGAATCAAGTTGG
AATCTATGTGATCTCACTGAAGGTATTGACAACGCGAAATATACAGACGA
CAATTCGAATGACTCTTTCTATGAGAATGAAAATGAGAATATGTATTTGA
AGTGTAGAAATAACAATTTGGAGAAAATGGATAGTTCTTTATACGAAAAT
GAAGATGGGTTTAAATGGAAGAATAATGATTTCAATGCATCGTTGTGTGG
AAATAATGAGGAGCAAGGATTTTATGAGGAAATGTTTGGGCAGTATGATG
ACGATGAGGGGGGAGAGCATGTTTACGAATATATCAATGAGGAGGAGGGT
GTAGATGCGGTTATACATAATGCGGAGAATTCACCGCTGGTTGAGTTTTT
GAACGGACAGAAAATCACTGACCGAAGAAATTACACgaatattgatttga
ttctggcaccatttgaaaagaaattgaacGAAATGAGAACATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057434-exon-scaffold_288-1491911889:463387..465577 | TCONS_00057434-exon-scaffold_288-1491911889:463387..465577 | Clytia hemisphaerica | exon |
| TCONS_00057434-exon-scaffold_288-1510915933:463387..465577 | TCONS_00057434-exon-scaffold_288-1510915933:463387..465577 | Clytia hemisphaerica | exon |
| TCONS_00057434-exon-scaffold_288-1575043694:463387..465577 | TCONS_00057434-exon-scaffold_288-1575043694:463387..465577 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_288 | supercontig | scaffold_288:463387..465577 . |
Blast
The following BLAST results are available for this feature:
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