TCONS_00057430 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057430
Unique NameTCONS_00057430
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length312

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057430 ID=TCONS_00057430|Name=TCONS_00057430|organism=Clytia hemisphaerica|type=transcript|length=312bp
NNCCGTACAGCCGGTCCGGTAGGAGAATCTATCACAACCGCAATTACGAG
CCCTTTATTGAAAGGGAAAACGGAATATTTGGATACCCAAAGTTGCTCAT
GCTATCAATTCTAGCCATTAGTAATTATGAAAAACTAGTTATTGGTAGTA
CCTCCTTTACAGTTCACTCCATCCTTGCCCATTCTACAACATGCTAGCCA
ATTGAGGGGTACCAAATATCTTTTCTTCATAACTTAAATTTTCTTGCCTT
CTTCCCAAGTCTTGACCAGCTATCTGTACAACTGATGCTCTACGTGTGAT
AATGACTCAATN
Run BLAST on NCBI

transcript from alignment at scaffold_288:434563..434874

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057430 ID=TCONS_00057430|Name=TCONS_00057430|organism=Clytia hemisphaerica|type=transcript|length=312bp|location=Sequence derived from alignment at scaffold_288:434563..434874 (Clytia hemisphaerica)
NATTGAGTCATTATCACACGTAGAGCATCAGTTGTACAGATAGCTGGTCA
AGACTTGGGAAGAAGGCAAGAAAATTTAAGTTATGAAGAAAAGATATTTG
GTACCCCTCAATTGGCTAGCATGTTGTAGAATGGGCAAGGATGGAGTGAA
CTGTAAAGGAGGTACTACCAATAACTAGTTTTTCATAATTACTAATGGCT
AGAATTGATAGCATGAGCAACTTTGGGTATCCAAATATTCCGTTTTCCCT
TTCAATAAAGGGCTCGTAATTGCGGTTGTGATAGATTCTCCTACCGGACC
GGCTGTACGGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036189XLOC_036189Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057430-exon-scaffold_288-1491911889:434563..434874TCONS_00057430-exon-scaffold_288-1491911889:434563..434874Clytia hemisphaericaexon
TCONS_00057430-exon-scaffold_288-1510915933:434563..434874TCONS_00057430-exon-scaffold_288-1510915933:434563..434874Clytia hemisphaericaexon
TCONS_00057430-exon-scaffold_288-1575043694:434563..434874TCONS_00057430-exon-scaffold_288-1575043694:434563..434874Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_288supercontigscaffold_288:434563..434874 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.972392	2.06412	2.50673	0	0.733863	1.32806	0.828877	1.05974	1.43763	1.26661	1.19627	6.27589	7.41142	5.52225	7.57888	7.6321	9.05309	4.31137	2.51982	7.99885	5.07447	0.90409	0.511574	1.55818	1.64969	0	0.674036	0.974187	0.624688
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057430 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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