TCONS_00057428 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057428
Unique NameTCONS_00057428
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length835

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057428 ID=TCONS_00057428|Name=TCONS_00057428|organism=Clytia hemisphaerica|type=transcript|length=835bp
cttttttctatCTTTCAAAGATTATCAAACAAAGATTAATTTAAAATGTC
GAGTCCATCATTTGCGTTTGCTATCTGTACGGAACAATCACAAGAATACC
AAAACATCAAAGCAGAATTGGGCACGGAGCTCACCATCCAAGATATTTAC
TACGCTAACAAAAAGTACATCGGTAAAAACTTGAGTGCGAAAATTGACAC
AGGAATGAAAGATTGTAAGTGTTTGCTGGTCTTTTGTACGGCCGATTTCA
AGACTTTTATGGACGAAAAGAAAGGTGGAAGTAAATGCACTCTACCGCTA
GGTAAGGATGAGaaatcgatttttgagaaaggcTTCAAGAAACACAAAGA
TAAGATCATTTTGATTGATTTCAAAGGCAATGAAGCGTCGAAAATACAAC
CCGGATGTTTGAGTGAACATATGATGAGTAGCACAAGTTTGAAGGATGAT
ATAGATATTGTGAaggataaaatgaaaatgaaagtcacTCAATCCAAtat
caagaaaaagtaaaatgatGAAATATAACAGCTGTAAGGCAAGCAAGGAT
GTGCAAATTCAGCTGTGAAGATTTCGGCTACTCTACTGATACCTGGAAAG
CTGTGAAGTGTCtttctcgaaaaattttttgtttattagaATTCAAACTG
TGTGCGTCTGATAGATTTATTCATCGatgatttgttttggtttattaaaa
agtaattttataTGCATAATagattctttaaatttttatatttaaaattc
aacaaaattttctGTATTATAGCATTTCTAACACTATAAATATAATCTAT
TAGAGATAATTAATTTGTACAAATATGACCAACCG
Run BLAST on NCBI

protein sequence of TCONS_00057428-protein

>TCONS_00057428-protein ID=TCONS_00057428-protein|Name=TCONS_00057428-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
MSSPSFAFAICTEQSQEYQNIKAELGTELTIQDIYYANKKYIGKNLSAKI
DTGMKDCKCLLVFCTADFKTFMDEKKGGSKCTLPLGKDEKSIFEKGFKKH
KDKIILIDFKGNEASKIQPGCLSEHMMSSTSLKDDIDIVKDKMKMKVTQS
NIKKK
Run BLAST on NCBI

transcript from alignment at scaffold_288:383451..384285

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057428 ID=TCONS_00057428|Name=TCONS_00057428|organism=Clytia hemisphaerica|type=transcript|length=835bp|location=Sequence derived from alignment at scaffold_288:383451..384285 (Clytia hemisphaerica)
CGGTTGGTCATATTTGTACAAATTAATTATCTCTAATAGATTATATTTAT
AGTGTTAGAAATGCTATAATACagaaaattttgttgaattttaaatataa
aaatttaaagaatctATTATGCAtataaaattactttttaataaaccaaa
acaaatcatCGATGAATAAATCTATCAGACGCACACAGTTTGAATtctaa
taaacaaaaaatttttcgagaaaGACACTTCACAGCTTTCCAGGTATCAG
TAGAGTAGCCGAAATCTTCACAGCTGAATTTGCACATCCTTGCTTGCCTT
ACAGCTGTTATATTTCatcattttactttttcttgataTTGGATTGAgtg
actttcattttcattttatcctTCACAATATCTATATCATCCTTCAAACT
TGTGCTACTCATCATATGTTCACTCAAACATCCGGGTTGTATTTTCGACG
CTTCATTGCCTTTGAAATCAATCAAAATGATCTTATCTTTGTGTTTCTTG
AAgcctttctcaaaaatcgatttCTCATCCTTACCTAGCGGTAGAGTGCA
TTTACTTCCACCTTTCTTTTCGTCCATAAAAGTCTTGAAATCGGCCGTAC
AAAAGACCAGCAAACACTTACAATCTTTCATTCCTGTGTCAATTTTCGCA
CTCAAGTTTTTACCGATGTACTTTTTGTTAGCGTAGTAAATATCTTGGAT
GGTGAGCTCCGTGCCCAATTCTGCTTTGATGTTTTGGTATTCTTGTGATT
GTTCCGTACAGATAGCAAACGCAAATGATGGACTCGACATTTTAAATTAA
TCTTTGTTTGATAATCTTTGAAAGatagaaaaaag

Coding sequence (CDS) from alignment at scaffold_288:383451..384285

>TCONS_00057428 ID=TCONS_00057428|Name=TCONS_00057428|organism=Clytia hemisphaerica|type=CDS|length=468bp|location=Sequence derived from alignment at scaffold_288:383451..384285 (Clytia hemisphaerica)
ttactttttcttgataTTGGATTGAgtgactttcattttcattttatcct
TCACAATATCTATATCATCCTTCAAACTTGTGCTACTCATCATATGTTCA
CTCAAACATCCGGGTTGTATTTTCGACGCTTCATTGCCTTTGAAATCAAT
CAAAATGATCTTATCTTTGTGTTTCTTGAAgcctttctcaaaaatcgatt
tCTCATCCTTACCTAGCGGTAGAGTGCATTTACTTCCACCTTTCTTTTCG
TCCATAAAAGTCTTGAAATCGGCCGTACAAAAGACCAGCAAACACTTACA
ATCTTTCATTCCTGTGTCAATTTTCGCACTCAAGTTTTTACCGATGTACT
TTTTGTTAGCGTAGTAAATATCTTGGATGGTGAGCTCCGTGCCCAATTCT
GCTTTGATGTTTTGGTATTCTTGTGATTGTTCCGTACAGATAGCAAACGC
AAATGATGGACTCGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036187XLOC_036187Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057428-proteinTCONS_00057428-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057428-exon-scaffold_288-1491911889:383451..384285TCONS_00057428-exon-scaffold_288-1491911889:383451..384285Clytia hemisphaericaexon
TCONS_00057428-exon-scaffold_288-1510915933:383451..384285TCONS_00057428-exon-scaffold_288-1510915933:383451..384285Clytia hemisphaericaexon
TCONS_00057428-exon-scaffold_288-1575043694:383451..384285TCONS_00057428-exon-scaffold_288-1575043694:383451..384285Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_288supercontigscaffold_288:383451..384285 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0641689	0.0627792	12.0756	9.05913	15.8113	18.213	19.8673	14.6115	17.6848	12.3047	24.349	16.2445	11.5209	13.5033	25.8672	25.074	33.8579	40.9776	25.9182	26.46	17.9997	24.2807	17.5851	16.0201	100.946	71.4072	8.55486	8.71605
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057428 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top