TCONS_00057384 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057384
Unique NameTCONS_00057384
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1197

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057384 ID=TCONS_00057384|Name=TCONS_00057384|organism=Clytia hemisphaerica|type=transcript|length=1197bp
CTAAATCataataataaattttgatcaTGTCTAAAATATTCCAAAGAAAC
CTAAAGAAAAATGGATGTAATTTAGGATTGTGAAAGGCTTAACAAGAGTA
GCAATCTATCAGATTTACACTCGACTTAAAAAGCATGCTAAATCCTACTG
ATCACTTTATCCCTATATCTCCATTAGTTACAGTTACAAAACTTCAAACA
GAATCATCAAAACTTCATGCTTCATAGTCTTTGATGTCACACAGTTAATC
ATTGAGTATTTGATGCAtacaagaaaaaattcaaaaattcaatatGTTGC
TGGAGGCTTGTGTTGTacattgaaatttgttttttggaTGGTGGTTTTGG
GTTGTAGTACAGAGCAAAATAGAGCGAACATTTGATGTAAATGGCAGCTC
TGTTAAGTGAAACCAAACGAATcgTATGCATTCGCTTGGCAATAGTATTG
TTTATTGCCTCCTTTTCGATACTATTTACAAGCTTGGACAGTAACCTATT
ACTAAATGCCGGTGTTGGATTATGGGCAGCGGGATTTATAACACTCTCAA
GCATATTGTTACTGATACCTTTGGCAAGAAGGACGTGTTACGTTTTGTTA
GTGCATCTGAACTTATCCATCTTGGGCACGCTGACGGGTATCGTGGTCAA
TGCATTTACACTGAGGAAGTTGTTGTGGGAGAAGGACTATGAGCTATCAT
TAGAAGCATGTACAATTTTATTAGGTGTCACTCTCGTCCTGATGTGCATC
GAGATTTTCATATCAATTTATTTGATATGTTCTTCATTTCAAAAAACGAA
AAGTCAAGGTATTACGTTGTTGGAAAACAAAGGTTCAGAGGCCAAGGAGG
GTTTACTGTTACATCAAGACCAAAAATTCAAAGAGACGTAACTGCAAAAC
TATTTACAAAATATGTAGTATTAGAAACTATAATTGATTTAGATCTATAT
CAAAACCTGTATTTTGACCATTATTTTTATATTCACCTGTAAATATATTA
ACTCATATAAAAAGTAGTACAATTGAAGGAACCCATTGACTATCTTTTTT
TCCTCGGGACTCAGTGAAGTAGGTAAGAGTAACACAACCCAAATTATAAC
TCTTTTCATCCTTTGAAAGTTATCCTCAATACCCAAAAAAGCAATCTAGG
AAggaagagtggcgccctcccctaccatCGGATAGACTTCGAGTCGT
Run BLAST on NCBI

protein sequence of TCONS_00057384-protein

>TCONS_00057384-protein ID=TCONS_00057384-protein|Name=TCONS_00057384-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
MAALLSETKRIVCIRLAIVLFIASFSILFTSLDSNLLLNAGVGLWAAGFI
TLSSILLLIPLARRTCYVLLVHLNLSILGTLTGIVVNAFTLRKLLWEKDY
ELSLEACTILLGVTLVLMCIEIFISIYLICSSFQKTKSQGITLLENKGSE
AKEGLLLHQDQKFKET
Run BLAST on NCBI

transcript from alignment at scaffold_288:584325..588435-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057384 ID=TCONS_00057384|Name=TCONS_00057384|organism=Clytia hemisphaerica|type=transcript|length=4111bp|location=Sequence derived from alignment at scaffold_288:584325..588435- (Clytia hemisphaerica)
CTAAATCATAATAATAAATTTTGATCATGTCTAAAATATTCCAAAGAAAC
CTAAAGAAAAATGGATGTAATTTAGGATTGTGAAAGGCTTAACAAGAGTA
GCAATCTATCAGATTTACACTCGACTTAAAAAGCATGCTAAATCCTACTG
ATCACTTTATCCCTATATCTCCATTAGTTACAGTTACAAAACTTCAAACA
GAATCATCAAAACTTCATGCTTCATAGTCTTTGATGTCACACAGTTAATC
ATTGAGTATTTGATGCATACAAGAAAAAATTCAAAAATTCAATATGTTGC
TGGAGGCTTGTGTTGTACATTGAAATTTGTTTTTTGGATGGTGGTTTTGG
GTTGTAGTACAGAGCAAAATAGAGCGAACATTTGATGTAAATGGCAGCTC
TGTTAAGTGAAACCAAACGAATCGGTAAATTTTCTTTTTCTATGTAATAA
TAGGTTCCTTTCCATAAAATTACATGCTTTTGAAGCCTTTAGATGTTCTT
AACTTTTTGGACTAAAAAGCCTAAAAATGTTCTTAACTTGTTCTTAAGAT
TTTGGCCATCGAAGCGTTATGTTCTTATATAGTTTGTTCTCATAAGAAAA
CGTGTAACTGACAAAAGAGAAGTGGGTTAATGTCCGCCAATCAGGAACAT
GTTTTTTATTATAAAACCTCCAAAATCTTTGAAGCCTTCGGATGTTCGGA
AATTTTTAGTTTTGAGCCTAAAAATGTTCTTGAAATTTCACCATTTTGTG
AGTGTTTTTGATGCAATTTCCCTAAGAAAATGGGTGTTTTAGGGTCCATA
AATCCATAAAAAGTTCCTAATTTGTTCTTCATGTTTTGGCTATTCTTATA
TAGTTTGTTGTTATTAAAAACGTGTATCTGGTCTCCATTTCTTAGAAGAG
TTTAAACACCATTCTAACGGGTAAGGGGTACACTATGTAACACATTCTTT
TGACTTTAACCAACAGTAGGAACCTTGGAGCGCCGCGACCCATGCACCAA
TTGACATCGCCCATACATGCGGTACAATCGGGCATAGGCTTTCGTGATTG
AGTTTTCCTTGGAGTTGCCCTCAAGAATATTCAGTTTTTGTATTTCTAGC
CTTTCTGTGATTCGTGTTTTGAAAGCGTGCCAATAAACATTAAGGAAAAA
CAAACCACTCCACTGCTCTTTAGAAATACTTAAAGACTTAACACTTTTAA
AAGCTACCTTAAAGGAAGAAATTTTGGCGGGAATTTAATTTGGTGGAAGG
TCGAAAAAAGTTTTTTAGAGGGAAATTAATTTGGCGGATGGATGAAAAAA
CTAAATTTGGCGGGAATTTAATTTTGCGTTTGCTGAAAAATGTATCCTTA
AAATGGCATAAAAACAGCAAAAAAATATATGCAAAAACACCTTAAAAGAG
ATCATATTTTCAAAAAGTTTAATTTGGCGGGAATTTAATTTGGCGGATGG
TGGAAAAAAGAAATTTTGGCAGCAGGAACTTAATTTGGCCAAATCCGCCA
AATTTTCTTTCCGCCAAAATTTCCTCCTTTTAGGTAATCAAGATTTTGAG
ACGTTTTTACCTTAATTATCTCTCTCTTTTCCGTTTTTAGTATGCATTCG
CTTGGCAATAGTATTGTTTATTGCCTCCTTTTCGATACTATTTACAAGCT
TGGACAGTAACCTATTACTAAATGCCGGTGTTGGATTATGGGCAGCGGGA
TTTATAACACTCTCAAGCATATTGTTACTGATACCTTTGGCAAGAAGGAC
GTGTTACGTTTTGTTAGTGCATCTGAACTTATCCATCTTGGGCACGCTGA
CGGGTATCGTGGTCAATGCATTTACACTGAGGTAAGGAATTTTGTTCACA
GAATTTTTATAATATCCCACCACCTATGAGAAGTGGCTTTTTTGCAACAT
CACCTTCAAATAGGGGGAATTCTGAGATACGATACTTTTTATTAACGGAT
AGCATATTTTTTTCAAAGATTACAGAACAAATATGATTTTTTGAATTGAC
TTGACTTTAAGGTAATATTCATTCTACTTCTTCACATAGGAAGTTGTTGT
GGGAGAAGGACTATAAGCTATCAANTTCGTTCTATTTCTTCACATAGGAA
GTTGTTGTGGGAGAAGGACTATGAGCTATCATTAGAAGCATGTACAATTT
TATTAGGTGTCACTCTCGTCCTGATGTGCATCGAGATTTTCATATCAATT
TATTTGATATGTTCTTCATTTCAAAAAACGAAAAGTCAAGGTAAATTCTA
CATGACTTATACATCAAAGTATATGCTTATTTACTTTTTATTCTCACGCG
ACAATGACCCTTTAGTACCGAAAAAATGTTGACTTACTAGTACTTAGACT
TTGGTTTTAACCTATGCAAAAGTGGGTATTCTTGGGTAACTAGCCCAATG
TGTATATTGAATATACAGGTAAATACTTGGTCACAAATCAAAATACACTT
ACATTGATTGACCTTTCAGATATCCAAATTCCTCATCTTTTGATCCAGGG
GAGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNAACTGTACTAAGTGTACCAAGGTGGTGGTGTTACTAACTTCTT
CCGAGAAAGCAGTTAGTAGGCATGATGTCTTGTACTAACTGCTTCACCCC
CCCCTGTTTGATCTCCAAATTCAAACATATGCCAAAATGTCTTGCAAATT
TTAGTTTATTTTTCATCATTTTATACATTTTCACTAAAAATAAAAGAACA
ATTACTATTTTTTCCATCTTAGGTATTACGTTGTTGGAAAACAAAGGTTC
AGAGGCCAAGGAGGGTTTACTGTTACATCAAGACCAAAAATTCAAAGAGA
CGTAACTGCAAAACTATTTACAAAATATGTAGTATTAGAAACTATAATTG
ATTTAGATCTATATCAAAACCTGTATTTTGACCATTATTTTTATATTCAC
CTGTAAATATATTAACTCATATAAAAAGTAGTACAATTGAAGGAACCCAT
TGACTATCTTTTTTTCCTCGGGACTCAGTGAAGTAGGTAAGAGTAACACA
ACCCAAATTATAACTCTTTTCATCCTTTGAAAGTTATCCTCAATACCCAA
AAAAGCAATCTAGGAAGGAAGAGTGGCGCCCTCCCCTACCATCGGATAGA
CTTCGAGTCGT

Coding sequence (CDS) from alignment at scaffold_288:584325..588435-

>TCONS_00057384 ID=TCONS_00057384|Name=TCONS_00057384|organism=Clytia hemisphaerica|type=CDS|length=2004bp|location=Sequence derived from alignment at scaffold_288:584325..588435- (Clytia hemisphaerica)
GTATTACGTTGTTGGAAAACAAAGGTTCAGAGGCCAAGGAGGGTTTACTG
TTACATCAAGACCAAAAATTCAAAGAGACGTAAGAAGTTGTTGTGGGAGA
AGGACTATGAGCTATCATTAGAAGCATGTACAATTTTATTAGGTGTCACT
CTCGTCCTGATGTGCATCGAGATTTTCATATCAATTTATTTGATATGTTC
TTCATTTCAAAAAACGAAAAGTCAAGTATGCATTCGCTTGGCAATAGTAT
TGTTTATTGCCTCCTTTTCGATACTATTTACAAGCTTGGACAGTAACCTA
TTACTAAATGCCGGTGTTGGATTATGGGCAGCGGGATTTATAACACTCTC
AAGCATATTGTTACTGATACCTTTGGCAAGAAGGACGTGTTACGTTTTGT
TAGTGCATCTGAACTTATCCATCTTGGGCACGCTGACGGGTATCGTGGTC
AATGCATTTACACTGAGATGGCAGCTCTGTTAAGTGAAACCAAACGAATC
GGTATTACGTTGTTGGAAAACAAAGGTTCAGAGGCCAAGGAGGGTTTACT
GTTACATCAAGACCAAAAATTCAAAGAGACGTAAGAAGTTGTTGTGGGAG
AAGGACTATGAGCTATCATTAGAAGCATGTACAATTTTATTAGGTGTCAC
TCTCGTCCTGATGTGCATCGAGATTTTCATATCAATTTATTTGATATGTT
CTTCATTTCAAAAAACGAAAAGTCAAGTATGCATTCGCTTGGCAATAGTA
TTGTTTATTGCCTCCTTTTCGATACTATTTACAAGCTTGGACAGTAACCT
ATTACTAAATGCCGGTGTTGGATTATGGGCAGCGGGATTTATAACACTCT
CAAGCATATTGTTACTGATACCTTTGGCAAGAAGGACGTGTTACGTTTTG
TTAGTGCATCTGAACTTATCCATCTTGGGCACGCTGACGGGTATCGTGGT
CAATGCATTTACACTGAGATGGCAGCTCTGTTAAGTGAAACCAAACGAAT
CGGTATTACGTTGTTGGAAAACAAAGGTTCAGAGGCCAAGGAGGGTTTAC
TGTTACATCAAGACCAAAAATTCAAAGAGACGTAAGAAGTTGTTGTGGGA
GAAGGACTATGAGCTATCATTAGAAGCATGTACAATTTTATTAGGTGTCA
CTCTCGTCCTGATGTGCATCGAGATTTTCATATCAATTTATTTGATATGT
TCTTCATTTCAAAAAACGAAAAGTCAAGTATGCATTCGCTTGGCAATAGT
ATTGTTTATTGCCTCCTTTTCGATACTATTTACAAGCTTGGACAGTAACC
TATTACTAAATGCCGGTGTTGGATTATGGGCAGCGGGATTTATAACACTC
TCAAGCATATTGTTACTGATACCTTTGGCAAGAAGGACGTGTTACGTTTT
GTTAGTGCATCTGAACTTATCCATCTTGGGCACGCTGACGGGTATCGTGG
TCAATGCATTTACACTGAGATGGCAGCTCTGTTAAGTGAAACCAAACGAA
TCGGTATTACGTTGTTGGAAAACAAAGGTTCAGAGGCCAAGGAGGGTTTA
CTGTTACATCAAGACCAAAAATTCAAAGAGACGTAAGAAGTTGTTGTGGG
AGAAGGACTATGAGCTATCATTAGAAGCATGTACAATTTTATTAGGTGTC
ACTCTCGTCCTGATGTGCATCGAGATTTTCATATCAATTTATTTGATATG
TTCTTCATTTCAAAAAACGAAAAGTCAAGTATGCATTCGCTTGGCAATAG
TATTGTTTATTGCCTCCTTTTCGATACTATTTACAAGCTTGGACAGTAAC
CTATTACTAAATGCCGGTGTTGGATTATGGGCAGCGGGATTTATAACACT
CTCAAGCATATTGTTACTGATACCTTTGGCAAGAAGGACGTGTTACGTTT
TGTTAGTGCATCTGAACTTATCCATCTTGGGCACGCTGACGGGTATCGTG
GTCAATGCATTTACACTGAGATGGCAGCTCTGTTAAGTGAAACCAAACGA
ATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036153XLOC_036153Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057384-exon-scaffold_288-1575043694:588012..588435TCONS_00057384-exon-scaffold_288-1575043694:588012..588435Clytia hemisphaericaexon
TCONS_00057384-exon-scaffold_288-1575043694:586605..586845TCONS_00057384-exon-scaffold_288-1575043694:586605..586845Clytia hemisphaericaexon
TCONS_00057384-exon-scaffold_288-1575043694:586196..586338TCONS_00057384-exon-scaffold_288-1575043694:586196..586338Clytia hemisphaericaexon
TCONS_00057384-exon-scaffold_288-1575043694:584325..584713TCONS_00057384-exon-scaffold_288-1575043694:584325..584713Clytia hemisphaericaexon
TCONS_00057384-exon-scaffold_288-1510915933:588012..588435TCONS_00057384-exon-scaffold_288-1510915933:588012..588435Clytia hemisphaericaexon
TCONS_00057384-exon-scaffold_288-1510915933:586605..586845TCONS_00057384-exon-scaffold_288-1510915933:586605..586845Clytia hemisphaericaexon
TCONS_00057384-exon-scaffold_288-1510915933:586196..586338TCONS_00057384-exon-scaffold_288-1510915933:586196..586338Clytia hemisphaericaexon
TCONS_00057384-exon-scaffold_288-1510915933:584325..584713TCONS_00057384-exon-scaffold_288-1510915933:584325..584713Clytia hemisphaericaexon
TCONS_00057384-exon-scaffold_288-1491911889:588012..588435TCONS_00057384-exon-scaffold_288-1491911889:588012..588435Clytia hemisphaericaexon
TCONS_00057384-exon-scaffold_288-1491911889:586605..586845TCONS_00057384-exon-scaffold_288-1491911889:586605..586845Clytia hemisphaericaexon
TCONS_00057384-exon-scaffold_288-1491911889:586196..586338TCONS_00057384-exon-scaffold_288-1491911889:586196..586338Clytia hemisphaericaexon
TCONS_00057384-exon-scaffold_288-1491911889:584325..584713TCONS_00057384-exon-scaffold_288-1491911889:584325..584713Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057384-proteinTCONS_00057384-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_288supercontigscaffold_288:584325..588435 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0359086	0	0	0.0397771	2.26479	1.60717	11.6801	10.8915	7.4741	5.11283	4.32459	4.47394	7.5705	7.63883	6.11703	7.1211	4.25498	5.30487	9.69561	5.21524	5.0689	4.45497	0.617582	0.973218	0.848178	0.860202	0.196952	0.204802	0.916683	0.730922
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057384 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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