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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057358 ID=TCONS_00057358|Name=TCONS_00057358|organism=Clytia hemisphaerica|type=transcript|length=2427bp
tcgtaattttttttatttattcatccAAGAAGATTTCTGTCTGAACTTCA
CTTCTAGAACATCGAGAACCATTGCTAAGAGATACCCTTCACAACAAAAC
TTTAAAGATAATCAAAGATGACATTTTGTAAATTTCTTCTACTCGTGTTG
AAATTTCCTTTGATTTTCGGTAAATATGAAACCCCTGATATGCCGTTCCT
CCCCTTCAAAATGGAAAGTCAAAACACGGCCATTTCCGGACCTTCACCGT
GGTTGATTCAAGAATTCACTTCCAAACACAAATGCTTCAAAACTTGTCTT
CAAAACTTCACGCTTTGTGGGCATGTTCAATATAAAGAGATTTCTGCTAA
TCGTTGGTTTTGTCAActttatgacgtcattgaaaACCTGTTCGATTACT
TGGTGTCACAGATAGGTGAGACTTTGTATTCAGCGCAACACCAAGACCTT
GACTGCAGCGATTGGAAGGACAGAGGGTACACAATACCAGGAACTTATTG
GATCTTTCGCAACAGAACAAAGATGAGAACAGTTTGCAATACAGGAAATC
CACCTTGGACCCTCATCCAAAAGCGAACGAGTGCGTACGACTTCAACCGC
TCGTGGGAAGAATACAAAAATGGGTTTGGAGATCCGGAAACTAATTTTTG
GATCGGGAACGACAAAATCCACAAGTTGACGTACGGTCGAGAGATGCAAA
TCCGTTTCACTGGTGAGCCCTATAGTAAGCCCAAGAAATTTTGCATTTAC
ACCGGTTTCTATATTGAGGGCGAAGAAAATAAATACCGCCTGCATACGGG
TGCTCATACAGGCGGTAGTGATACTTACGCCGGTGATTGGGCTCTTCACA
ATGGTTCTCTTTTTTCGGTGCGCTCTCAAGATAATGATGGTTGGGCAAAC
CATAATTGTGCTGTTAGGTTCAAGTTAAATGGTTGGTGGCTGGGTATAGT
AGAGGATGGAACTCCTTACTGTGCTGAACTTGCATTCAATGGTGATTGGG
ACGGACAGAGCCCCGATACTGGACCCTTTTGGAAGTCTTTAGACGGATAT
AAGTCCTTGAAGGCTACAACAATGGAAATTCGATTCAAAGAACTTTAACA
TGTTCTTCCAATTGATAAATTGAGTAATTGGGCgagacaaatttaatttt
ttaatttattgttctacgggaaaaccttcagaaaaatattggtTGGTCGG
TATAATAGaaataagtttttcaaaatctaggTTTGGTAGGTCAAGTTCTA
AAACTCTAGACTTTTCTTCTTACTCGATGAGTGGACTTTCGTGCTTTTCC
ATTGTTCAAATTTCAATTCATCCAATTTCTGGGATGAATTTACACTTTTT
CAACCTGTTCAGTtaaaaaaactgcaaaaaactTGTAAAGTCCATCCTTC
AGCTTTGCaaattaattattattatttttctcgatatttgaaaaaaaaac
agggtcggtcgggcccgtagaacaatgATTTATTTTGGCTCCGTATAAGA
TACTTAGAAGTTTCATGCCATAATAAATGATGAcgttatttaaaggtttt
atttttacataagtgttcccgtttcatatcagacacatatttcatatcag
gacagtgacTGATTGTTAtaatatgctgatataagcgataaatatttttc
ttttcccctttctgaccaatcttgctccgcacccgtgtcaatccaatgtg
aaaaagcttgtgaattaaaattGATGAATAAGCAAACGATATATAGATAG
GCGCTGTGATATAGTGGTCATTGACCTTGGTTGCTGCACGGGCGACTGAG
GTTCGATTCCCACTCGCAGCGGTTCACTTGCCGAATGAATGAACCTTCAA
CCCATGCCATGTGAGGGGAATTGGGTAGTCAGTCCAAGGGGCTGACGGGG
CGCTCATTGAAAGCGTCTATAGTTGCGAAAATAGGCCTCAAAGCCTCCTG
CAACTCAACCAAATTGACAATAGAAATATCACTGTTATTTAAGCCACGAT
AAACTTTCAATATTCATAAATGAAAAGGTGTTGTGACGAGTGTGGGTATT
TTGTTGAGGTAGAAGGAAACAAACAAAAACCTCATGTTGAGAAAAGACTC
TAAAATAATAATGAACATGGAATATATTAATTAAAAAAAAAACTTGCACC
AAATTTTACTGAGCACTTTTAGACTAAATTCTGCGTATTGTAACCTTTTA
TTTATTATCCACGATTTTTAATTCTTAGATTAATTTAAACTATCCAGGAA
TATAATAATTTTGATCTTATTCGAAATATCTTAACAGTTTCACGGTTTGA
ACTACCTTATTGGGGGAAAAATGTTGTTGAGTTATGAGttatttagtcgg
gttttttttcgtcggggaaaaatttcgtcacctagaggcattttcgtcac
tttcccccgaccaaaatttcaaattcg Run BLAST on NCBI protein sequence of TCONS_00057358-protein >TCONS_00057358-protein ID=TCONS_00057358-protein|Name=TCONS_00057358-protein|organism=Clytia hemisphaerica|type=polypeptide|length=326bp
MTFCKFLLLVLKFPLIFGKYETPDMPFLPFKMESQNTAISGPSPWLIQEF
TSKHKCFKTCLQNFTLCGHVQYKEISANRWFCQLYDVIENLFDYLVSQIG
ETLYSAQHQDLDCSDWKDRGYTIPGTYWIFRNRTKMRTVCNTGNPPWTLI
QKRTSAYDFNRSWEEYKNGFGDPETNFWIGNDKIHKLTYGREMQIRFTGE
PYSKPKKFCIYTGFYIEGEENKYRLHTGAHTGGSDTYAGDWALHNGSLFS
VRSQDNDGWANHNCAVRFKLNGWWLGIVEDGTPYCAELAFNGDWDGQSPD
TGPFWKSLDGYKSLKATTMEIRFKEL Run BLAST on NCBI transcript from alignment at scaffold_288:368643..371295- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057358 ID=TCONS_00057358|Name=TCONS_00057358|organism=Clytia hemisphaerica|type=transcript|length=2653bp|location=Sequence derived from alignment at scaffold_288:368643..371295- (Clytia hemisphaerica)
TCGTAATTTTTTTTATTTATTCATCCAAGAAGATTTCTGTCTGAACTTCA
CTTCTAGAACATCGAGAACCATTGCTAAGGTATGTAGGGTATTTTTATTA
ATGACTTCTTTGAGTTTTGTTAACTACTCATAAATATTTTTGACAACGAT
TGAATTTAGTGGTTTCTTTGTTTTCGAGTGGTATATTTTTTAAGGCCTCT
GTTACTTTATTTTTCTTTTTTTATGTTATATTGTGCTCTCTTTAAAATTA
AGAGGTTAATATTTTCTTGACTGATATTGAGAAATTGCTTTTTTGTTTTC
TCTAGAGATACCCTTCACAACAAAACTTTAAAGATAATCAAAGATGACAT
TTTGTAAATTTCTTCTACTCGTGTTGAAATTTCCTTTGATTTTCGGTAAA
TATGAAACCCCTGATATGCCGTTCCTCCCCTTCAAAATGGAAAGTCAAAA
CACGGCCATTTCCGGACCTTCACCGTGGTTGATTCAAGAATTCACTTCCA
AACACAAATGCTTCAAAACTTGTCTTCAAAACTTCACGCTTTGTGGGCAT
GTTCAATATAAAGAGATTTCTGCTAATCGTTGGTTTTGTCAACTTTATGA
CGTCATTGAAAACCTGTTCGATTACTTGGTGTCACAGATAGGTGAGACTT
TGTATTCAGCGCAACACCAAGACCTTGACTGCAGCGATTGGAAGGACAGA
GGGTACACAATACCAGGAACTTATTGGATCTTTCGCAACAGAACAAAGAT
GAGAACAGTTTGCAATACAGGAAATCCACCTTGGACCCTCATCCAAAAGC
GAACGAGTGCGTACGACTTCAACCGCTCGTGGGAAGAATACAAAAATGGG
TTTGGAGATCCGGAAACTAATTTTTGGATCGGGAACGACAAAATCCACAA
GTTGACGTACGGTCGAGAGATGCAAATCCGTTTCACTGGTGAGCCCTATA
GTAAGCCCAAGAAATTTTGCATTTACACCGGTTTCTATATTGAGGGCGAA
GAAAATAAATACCGCCTGCATACGGGTGCTCATACAGGCGGTAGTGATAC
TTACGCCGGTGATTGGGCTCTTCACAATGGTTCTCTTTTTTCGGTGCGCT
CTCAAGATAATGATGGTTGGGCAAACCATAATTGTGCTGTTAGGTTCAAG
TTAAATGGTTGGTGGCTGGGTATAGTAGAGGATGGAACTCCTTACTGTGC
TGAACTTGCATTCAATGGTGATTGGGACGGACAGAGCCCCGATACTGGAC
CCTTTTGGAAGTCTTTAGACGGATATAAGTCCTTGAAGGCTACAACAATG
GAAATTCGATTCAAAGAACTTTAACATGTTCTTCCAATTGATAAATTGAG
TAATTGGGCGAGACAAATTTAATTTTTTAATTTATTGTTCTACGGGAAAA
CCTTCAGAAAAATATTGGTTGGTCGGTATAATAGAAATAAGTTTTTCAAA
ATCTAGGTTTGGTAGGTCAAGTTCTAAAACTCTAGACTTTTCTTCTTACT
CGATGAGTGGACTTTCGTGCTTTTCCATTGTTCAAATTTCAATTCATCCA
ATTTCTGGGATGAATTTACACTTTTTCAACCTGTTCAGTTAAAAAAACTG
CAAAAAACTTGTAAAGTCCATCCTTCAGCTTTGCAAATTAATTATTATTA
TTTTTCTCGATATTTGAAAAAAAAACAGGGTCGGTCGGGCCCGTAGAACA
ATGATTTATTTTGGCTCCGTATAAGATACTTAGAAGTTTCATGCCATAAT
AAATGATGACGTTATTTAAAGGTTTTATTTTTACATAAGTGTTCCCGTTT
CATATCAGACACATATTTCATATCAGGACAGTGACTGATTGTTATAATAT
GCTGATATAAGCGATAAATATTTTTCTTTTCCCCTTTCTGACCAATCTTG
CTCCGCACCCGTGTCAATCCAATGTGAAAAAGCTTGTGAATTAAAATTGA
TGAATAAGCAAACGATATATAGATAGGCGCTGTGATATAGTGGTCATTGA
CCTTGGTTGCTGCACGGGCGACTGAGGTTCGATTCCCACTCGCAGCGGTT
CACTTGCCGAATGAATGAACCTTCAACCCATGCCATGTGAGGGGAATTGG
GTAGTCAGTCCAAGGGGCTGACGGGGCGCTCATTGAAAGCGTCTATAGTT
GCGAAAATAGGCCTCAAAGCCTCCTGCAACTCAACCAAATTGACAATAGA
AATATCACTGTTATTTAAGCCACGATAAACTTTCAATATTCATAAATGAA
AAGGTGTTGTGACGAGTGTGGGTATTTTGTTGAGGTAGAAGGAAACAAAC
AAAAACCTCATGTTGAGAAAAGACTCTAAAATAATAATGAACATGGAATA
TATTAATTAAAAAAAAAACTTGCACCAAATTTTACTGAGCACTTTTAGAC
TAAATTCTGCGTATTGTAACCTTTTATTTATTATCCACGATTTTTAATTC
TTAGATTAATTTAAACTATCCAGGAATATAATAATTTTGATCTTATTCGA
AATATCTTAACAGTTTCACGGTTTGAACTACCTTATTGGGGGAAAAATGT
TGTTGAGTTATGAGTTATTTAGTCGGGTTTTTTTTCGTCGGGGAAAAATT
TCGTCACCTAGAGGCATTTTCGTCACTTTCCCCCGACCAAAATTTCAAAT
TCG Coding sequence (CDS) from alignment at scaffold_288:368643..371295- >TCONS_00057358 ID=TCONS_00057358|Name=TCONS_00057358|organism=Clytia hemisphaerica|type=CDS|length=981bp|location=Sequence derived from alignment at scaffold_288:368643..371295- (Clytia hemisphaerica)
ATGACATTTTGTAAATTTCTTCTACTCGTGTTGAAATTTCCTTTGATTTT
CGGTAAATATGAAACCCCTGATATGCCGTTCCTCCCCTTCAAAATGGAAA
GTCAAAACACGGCCATTTCCGGACCTTCACCGTGGTTGATTCAAGAATTC
ACTTCCAAACACAAATGCTTCAAAACTTGTCTTCAAAACTTCACGCTTTG
TGGGCATGTTCAATATAAAGAGATTTCTGCTAATCGTTGGTTTTGTCAAC
TTTATGACGTCATTGAAAACCTGTTCGATTACTTGGTGTCACAGATAGGT
GAGACTTTGTATTCAGCGCAACACCAAGACCTTGACTGCAGCGATTGGAA
GGACAGAGGGTACACAATACCAGGAACTTATTGGATCTTTCGCAACAGAA
CAAAGATGAGAACAGTTTGCAATACAGGAAATCCACCTTGGACCCTCATC
CAAAAGCGAACGAGTGCGTACGACTTCAACCGCTCGTGGGAAGAATACAA
AAATGGGTTTGGAGATCCGGAAACTAATTTTTGGATCGGGAACGACAAAA
TCCACAAGTTGACGTACGGTCGAGAGATGCAAATCCGTTTCACTGGTGAG
CCCTATAGTAAGCCCAAGAAATTTTGCATTTACACCGGTTTCTATATTGA
GGGCGAAGAAAATAAATACCGCCTGCATACGGGTGCTCATACAGGCGGTA
GTGATACTTACGCCGGTGATTGGGCTCTTCACAATGGTTCTCTTTTTTCG
GTGCGCTCTCAAGATAATGATGGTTGGGCAAACCATAATTGTGCTGTTAG
GTTCAAGTTAAATGGTTGGTGGCTGGGTATAGTAGAGGATGGAACTCCTT
ACTGTGCTGAACTTGCATTCAATGGTGATTGGGACGGACAGAGCCCCGAT
ACTGGACCCTTTTGGAAGTCTTTAGACGGATATAAGTCCTTGAAGGCTAC
AACAATGGAAATTCGATTCAAAGAACTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057358-exon-scaffold_288-1575043694:371217..371295 | TCONS_00057358-exon-scaffold_288-1575043694:371217..371295 | Clytia hemisphaerica | exon |
| TCONS_00057358-exon-scaffold_288-1575043694:368643..370990 | TCONS_00057358-exon-scaffold_288-1575043694:368643..370990 | Clytia hemisphaerica | exon |
| TCONS_00057358-exon-scaffold_288-1510915933:371217..371295 | TCONS_00057358-exon-scaffold_288-1510915933:371217..371295 | Clytia hemisphaerica | exon |
| TCONS_00057358-exon-scaffold_288-1510915933:368643..370990 | TCONS_00057358-exon-scaffold_288-1510915933:368643..370990 | Clytia hemisphaerica | exon |
| TCONS_00057358-exon-scaffold_288-1491911889:371217..371295 | TCONS_00057358-exon-scaffold_288-1491911889:371217..371295 | Clytia hemisphaerica | exon |
| TCONS_00057358-exon-scaffold_288-1491911889:368643..370990 | TCONS_00057358-exon-scaffold_288-1491911889:368643..370990 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_288 | supercontig | scaffold_288:368643..371295 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00057358 vs. Swiss-Prot (Human)
Match: FCN1 (Ficolin-1 OS=Homo sapiens GN=FCN1 PE=1 SV=2) HSP 1 Score: 98.5969 bits (244), Expect = 4.899e-22 Identity = 75/220 (34.09%), Postives = 104/220 (47.27%), Query Frame = 1
Query: 451 DCSDWKDRGYTIPGTYWIFRNRTKMRTVC---NTGNPPWTLIQKRT-SAYDFNRSWEEYKNGFGDPETNFWIGNDKIHKLTYGREMQIRFTGEPYSKPKKFCIYTGFYIEGEENKYRLHTGAHTGGSDTYAGD-WALHNGSLFSVRSQDNDGWANHNCAVRFKLNGWWLGIVEDGTPYCAELAFNGDW---DGQSPDTGPFWKSLDGYK-SLKATTMEIR 1083
+C D DRGY + G + I+ + TV +T WT+ Q+R + DF R W YK GFG FW+GND IH LT ++R + +F Y F + E KY+L GA GGS AG+ HN + FS + QDND ++ NCA +F+ WW C NG + +S G W + GYK S K + M++R
Sbjct: 117 NCKDLLDRGYFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRMDGSVDFYRDWAAYKQGFGSQLGEFWLGNDNIHALTAQGSSELRVDLVDFEGNHQFAKYKSFKVADEAEKYKLVLGAFVGGS---AGNSLTGHNNNFFSTKDQDND-VSSSNCAEKFQ-GAWWYAD-------CHASNLNGLYLMGPHESYANGINWSAAKGYKYSYKVSEMKVR 324
The following BLAST results are available for this feature:
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