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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057350 ID=TCONS_00057350|Name=TCONS_00057350|organism=Clytia hemisphaerica|type=transcript|length=1310bp
taaaaacttaaaaacaaatttcgcAGAAGAAAAAGAGGCTGTCACGAAAA
CATCATGCAGATTATACAACTTGTTACCATTTTGGTATCAATTCTAAACC
TTGGCTCAGGTTCAAGTTGGCTTTGTTCAGACTGCAAAAAGAATGCCGCG
TGTATAAAAGAGTGCGCCAATCTCAAATCAGTCTCTACAACACTCAAAAC
AACAACGATATTCACAACAACAACACGCCCTACAACAACTATCAAAACCT
CAACCAAATGGCGCCCGAAAACAAAACCATCATGGTGGATTCCACTCCCT
TGTAAATTATGTTTAGGATGGGTTTCCAGAAGAAATGCAACAATCCGCAG
GATTTGTAGATACGGTTGTGGCAATGGTCAACCTGGCCTTTCAACGACCA
CCACTACAACCATGACGACAACTTTGCAAACAACAAACCAACCTTCTTCA
GCAAGCCTACCTTCAACTACGGCATTTTGGATCAAAGAGACAACGCCGAC
AACATTGGAGACAGTGACTAGAGAGTTTCGACAACAACAAAGGCTAGCCG
TACGTCTCTCCACAGTGACACGACATACAAATTACATTTGGTTCTTAATC
GGCATCGTAGGGGTTGGGTTTCTTGTGACTTCATTTTTCGTGATTCGTAA
ATACACTTCAGTAAAGCAAAGGATTGGTGTTGTCAACATCGAAGCTCAGG
AACAAGCTGAGATTATTCATATATCAAGGCCTTTCACTTTGCCCTGATTT
TTCTTATTTAATCCTCTACAAAAACTGCTGATAAATGATATTTCATGTCT
TTAGGACTttgtaaaagaaaaatcttGCATGCGTTCGACTTTTCAGCCTC
CTATACGGGTTAAATTACATAAcacataatttttcatttaatttgatACT
GCTTTCAAATCATCTTTTGTATCTGGAATGTATTTCTCAAGAAAATTACC
AAGCCAAGTCATATTTATTGACAAAGGAAGGACACAAAAATTTACTtaag
tcctccaaaacaaactactttttatccaaaattaaaatcctCCATCAAAT
AAGGAATTATATAAGTATAATTTATTGGCATCGAAATGTCGATTTATTTG
CAAAACTCGCGGatcaaatttttgtaaatattgttAATGCGGCGCGCCAA
TTGTGTACATATATTTCGCAAATAgttattgtttgtttgttgtttattgT
ACATAGTTTTACTTAATTActttttaagccaatttttttatcaatttgta
TATATGTTTTAGTAAAAtcttaaatcttaaaatttaatATCTACCATGGT
CTAAGAGAAG Run BLAST on NCBI protein sequence of TCONS_00057350-protein >TCONS_00057350-protein ID=TCONS_00057350-protein|Name=TCONS_00057350-protein|organism=Clytia hemisphaerica|type=polypeptide|length=230bp
MQIIQLVTILVSILNLGSGSSWLCSDCKKNAACIKECANLKSVSTTLKTT
TIFTTTTRPTTTIKTSTKWRPKTKPSWWIPLPCKLCLGWVSRRNATIRRI
CRYGCGNGQPGLSTTTTTTMTTTLQTTNQPSSASLPSTTAFWIKETTPTT
LETVTREFRQQQRLAVRLSTVTRHTNYIWFLIGIVGVGFLVTSFFVIRKY
TSVKQRIGVVNIEAQEQAEIIHISRPFTLP Run BLAST on NCBI transcript from alignment at scaffold_288:212010..213514- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057350 ID=TCONS_00057350|Name=TCONS_00057350|organism=Clytia hemisphaerica|type=transcript|length=1505bp|location=Sequence derived from alignment at scaffold_288:212010..213514- (Clytia hemisphaerica)
TAAAAACTTAAAAACAAATTTCGCAGAAGAAAAAGAGGCTGTCACGAAAA
CATCATGCAGATTATACAACTTGTTACCATTTTGGTATCAATTCTAAACC
TTGGCTCAGGTAAGTTCCTTATTTTCTTTACTTAGACAGCATCTTGCATC
ATCATTTAGATTAAATCGTCTGCTCTTAGGCAGATCAAATGAAGTGTTCT
GTCTACTGCTAAGGAAAACACGACACATTCTTAAAAGGCTTAGAAAATAG
TAGAAGTAGATTTGATCTTCTCATTTAAACTGAATTTCATTCAACATTTT
TCAGGTTCAAGTTGGCTTTGTTCAGACTGCAAAAAGAATGCCGCGTGTAT
AAAAGAGTGCGCCAATCTCAAATCAGTCTCTACAACACTCAAAACAACAA
CGATATTCACAACAACAACACGCCCTACAACAACTATCAAAACCTCAACC
AAATGGCGCCCGAAAACAAAACCATCATGGTGGATTCCACTCCCTTGTAA
ATTATGTTTAGGATGGGTTTCCAGAAGAAATGCAACAATCCGCAGGATTT
GTAGATACGGTTGTGGCAATGGTCAACCTGGCCTTTCAACGACCACCACT
ACAACCATGACGACAACTTTGCAAACAACAAACCAACCTTCTTCAGCAAG
CCTACCTTCAACTACGGCATTTTGGATCAAAGAGACAACGCCGACAACAT
TGGAGACAGTGACTAGAGAGTTTCGACAACAACAAAGGCTAGCCGTACGT
CTCTCCACAGTGACACGACATACAAATTACATTTGGTTCTTAATCGGCAT
CGTAGGGGTTGGGTTTCTTGTGACTTCATTTTTCGTGATTCGTAAATACA
CTTCAGTAAAGCAAAGGATTGGTGTTGTCAACATCGAAGCTCAGGAACAA
GCTGAGATTATTCATATATCAAGGCCTTTCACTTTGCCCTGATTTTTCTT
ATTTAATCCTCTACAAAAACTGCTGATAAATGATATTTCATGTCTTTAGG
ACTTTGTAAAAGAAAAATCTTGCATGCGTTCGACTTTTCAGCCTCCTATA
CGGGTTAAATTACATAACACATAATTTTTCATTTAATTTGATACTGCTTT
CAAATCATCTTTTGTATCTGGAATGTATTTCTCAAGAAAATTACCAAGCC
AAGTCATATTTATTGACAAAGGAAGGACACAAAAATTTACTTAAGTCCTC
CAAAACAAACTACTTTTTATCCAAAATTAAAATCCTCCATCAAATAAGGA
ATTATATAAGTATAATTTATTGGCATCGAAATGTCGATTTATTTGCAAAA
CTCGCGGATCAAATTTTTGTAAATATTGTTAATGCGGCGCGCCAATTGTG
TACATATATTTCGCAAATAGTTATTGTTTGTTTGTTGTTTATTGTACATA
GTTTTACTTAATTACTTTTTAAGCCAATTTTTTTATCAATTTGTATATAT
GTTTTAGTAAAATCTTAAATCTTAAAATTTAATATCTACCATGGTCTAAG
AGAAG Coding sequence (CDS) from alignment at scaffold_288:212010..213514- >TCONS_00057350 ID=TCONS_00057350|Name=TCONS_00057350|organism=Clytia hemisphaerica|type=CDS|length=1386bp|location=Sequence derived from alignment at scaffold_288:212010..213514- (Clytia hemisphaerica)
GTTCAAGTTGGCTTTGTTCAGACTGCAAAAAGAATGCCGCGTGTATAAAA
GAGTGCGCCAATCTCAAATCAGTCTCTACAACACTCAAAACAACAACGAT
ATTCACAACAACAACACGCCCTACAACAACTATCAAAACCTCAACCAAAT
GGCGCCCGAAAACAAAACCATCATGGTGGATTCCACTCCCTTGTAAATTA
TGTTTAGGATGGGTTTCCAGAAGAAATGCAACAATCCGCAGGATTTGTAG
ATACGGTTGTGGCAATGGTCAACCTGGCCTTTCAACGACCACCACTACAA
CCATGACGACAACTTTGCAAACAACAAACCAACCTTCTTCAGCAAGCCTA
CCTTCAACTACGGCATTTTGGATCAAAGAGACAACGCCGACAACATTGGA
GACAGTGACTAGAGAGTTTCGACAACAACAAAGGCTAGCCGTACGTCTCT
CCACAGTGACACGACATACAAATTACATTTGGTTCTTAATCGGCATCGTA
GGGGTTGGGTTTCTTGTGACTTCATTTTTCGTGATTCGTAAATACACTTC
AGTAAAGCAAAGGATTGGTGTTGTCAACATCGAAGCTCAGGAACAAGCTG
AGATTATTCATATATCAAGGCCTTTCACTTTGCCCTGAATGCAGATTATA
CAACTTGTTACCATTTTGGTATCAATTCTAAACCTTGGCTCAGGTTCAAG
TTGGCTTTGTTCAGACTGCAAAAAGAATGCCGCGTGTATAAAAGAGTGCG
CCAATCTCAAATCAGTCTCTACAACACTCAAAACAACAACGATATTCACA
ACAACAACACGCCCTACAACAACTATCAAAACCTCAACCAAATGGCGCCC
GAAAACAAAACCATCATGGTGGATTCCACTCCCTTGTAAATTATGTTTAG
GATGGGTTTCCAGAAGAAATGCAACAATCCGCAGGATTTGTAGATACGGT
TGTGGCAATGGTCAACCTGGCCTTTCAACGACCACCACTACAACCATGAC
GACAACTTTGCAAACAACAAACCAACCTTCTTCAGCAAGCCTACCTTCAA
CTACGGCATTTTGGATCAAAGAGACAACGCCGACAACATTGGAGACAGTG
ACTAGAGAGTTTCGACAACAACAAAGGCTAGCCGTACGTCTCTCCACAGT
GACACGACATACAAATTACATTTGGTTCTTAATCGGCATCGTAGGGGTTG
GGTTTCTTGTGACTTCATTTTTCGTGATTCGTAAATACACTTCAGTAAAG
CAAAGGATTGGTGTTGTCAACATCGAAGCTCAGGAACAAGCTGAGATTAT
TCATATATCAAGGCCTTTCACTTTGCCCTGAATGCAGATTATACAACTTG
TTACCATTTTGGTATCAATTCTAAACCTTGGCTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057350-exon-scaffold_288-1575043694:213406..213514 | TCONS_00057350-exon-scaffold_288-1575043694:213406..213514 | Clytia hemisphaerica | exon |
| TCONS_00057350-exon-scaffold_288-1575043694:212010..213210 | TCONS_00057350-exon-scaffold_288-1575043694:212010..213210 | Clytia hemisphaerica | exon |
| TCONS_00057350-exon-scaffold_288-1510915933:213406..213514 | TCONS_00057350-exon-scaffold_288-1510915933:213406..213514 | Clytia hemisphaerica | exon |
| TCONS_00057350-exon-scaffold_288-1510915933:212010..213210 | TCONS_00057350-exon-scaffold_288-1510915933:212010..213210 | Clytia hemisphaerica | exon |
| TCONS_00057350-exon-scaffold_288-1491911889:213406..213514 | TCONS_00057350-exon-scaffold_288-1491911889:213406..213514 | Clytia hemisphaerica | exon |
| TCONS_00057350-exon-scaffold_288-1491911889:212010..213210 | TCONS_00057350-exon-scaffold_288-1491911889:212010..213210 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_288 | supercontig | scaffold_288:212010..213514 - |
Blast
The following BLAST results are available for this feature:
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