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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057346 ID=TCONS_00057346|Name=TCONS_00057346|organism=Clytia hemisphaerica|type=transcript|length=1485bpRun BLAST on NCBI protein sequence of TCONS_00057346-protein >TCONS_00057346-protein ID=TCONS_00057346-protein|Name=TCONS_00057346-protein|organism=Clytia hemisphaerica|type=polypeptide|length=398bp MVDSRLKNDPSSLFHCFIEIDASESFQDPKIVLQYPDDFSEKELILKQVPRun BLAST on NCBI transcript from alignment at scaffold_288:110248..122985- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00057346 ID=TCONS_00057346|Name=TCONS_00057346|organism=Clytia hemisphaerica|type=transcript|length=12738bp|location=Sequence derived from alignment at scaffold_288:110248..122985- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_288:110248..122985- >TCONS_00057346 ID=TCONS_00057346|Name=TCONS_00057346|organism=Clytia hemisphaerica|type=CDS|length=19104bp|location=Sequence derived from alignment at scaffold_288:110248..122985- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00057346 vs. Swiss-Prot (Human)
Match: DEN1A (DENN domain-containing protein 1A OS=Homo sapiens GN=DENND1A PE=1 SV=2) HSP 1 Score: 344.354 bits (882), Expect = 6.641e-107 Identity = 178/399 (44.61%), Postives = 257/399 (64.41%), Query Frame = 3
Query: 294 VDSRLKNDPSSLFHCFIEID---ASESFQDPKIVLQYPDDFSEKELILKQVPGFCFPCEVKNDGVEYS----TVVLTDLESKFRFGFCRYPAKSTRCLCIVSYLPWFKTFYTVLDRLSQIENNNEEKGKDFCVFLETLNKEMIPDPGSQMFMKFKEKTYTFVAPDTTKLPTIPDNRNLTKYYAKTAPENMVHMFVSMLFERRIIVTSEKLSVLTAIVHGSVSLLYPMQWQHIFVPVLPSHLIDYCCAPMPFLIGVHSSLMPKVRQMPMNEVVILNADTNEMEVPDDELESCFPKSIITKLVKRLSRTDRASQDYVSSLFLEALADLIGGYRDALKFVDSPDGGKVIFDDEMFLNS-RKPHRKPFLESMLALQSFRQLIAGRLDLINDGVGFVDIFEKAI 1466
+ SR+K +P + F ++E+ + DP++ Q+P+D+S++E +L+ + FCFP V + V T VLTD++SK RFGFCR + + C CI+SYLPWF+ FY +L+ L+ +E + LETL+K IPDPG + + +Y F PDT +LP+IP+NRNLT+Y+ NM+H++ SML+ERRI++ KLS LTA +HGS ++LYPM WQH+++PVLP HL+DYCCAPMP+LIG+H SLM KVR M +++VVILN DTN +E P D+L+S P +I+ L RL + + D V+ FL+A A G YR+ALK P+ + F +E F++ R + FL++ LQ F+Q I GRLDL+N G GF D+FE+ I
Sbjct: 1 MGSRIKQNPETTFEVYVEVAYPRTGGTLSDPEVQRQFPEDYSDQE-VLQTLTKFCFPFYVDSLTVSQVGQNFTFVLTDIDSKQRFGFCRLSSGAKSCFCILSYLPWFEVFYKLLNILADYTTKRQEN--QWNELLETLHKLPIPDPGVSVHLSVH--SY-FTVPDTRELPSIPENRNLTEYFVAVDVNNMLHLYASMLYERRILIICSKLSTLTACIHGSAAMLYPMYWQHVYIPVLPPHLLDYCCAPMPYLIGIHLSLMEKVRNMALDDVVILNVDTNTLETPFDDLQS-LPNDVISSLKNRLKKVSTTTGDGVARAFLKAQAAFFGSYRNALKI--EPE-EPITFCEEAFVSHYRSGAMRQFLQNATQLQLFKQFIDGRLDLLNSGEGFSDVFEEEI 389 The following BLAST results are available for this feature:
BLAST of TCONS_00057346 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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