TCONS_00057337 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057337
Unique NameTCONS_00057337
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length962

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057337 ID=TCONS_00057337|Name=TCONS_00057337|organism=Clytia hemisphaerica|type=transcript|length=962bp
TTGTGGTTGACTGTTTGATGGTACCGAGGGTTGCGTCGATGGAGTAGAAT
CTCCGATAACAGCTTCTCCGTTGCCCACGGTAACGCTAACAGTCTGGCTA
TTATATGGTATGGAGGCTGAGTAGGTTTTCATCGAAGCTCCAGAACCTTC
GTTGAACTCAAGGACCATGTTAGGTGGTTGGCTTGTTGCGGTCGCTGTTG
ATTGAAGACCGTTAATGGTGCCGAAGGGTGGGACGGTGATCGTCTGTCCG
TTCCCTGGTGGGAATTTAAATGTAACTGCAGTGGTACCTTGGTTTTGAAT
CAAAGGTTTGATGGTGTAGGTGGATGTGGAGCCAGTATTGGTTGTTGGTG
GAGAGGTTGTGTCTCCAGAGGTAATTTCAGCTTTTCCGTTGCCAACATTG
ACGTAAATGTTGGAAGTCTTAGATGTAGTCCATGGTAGAGCGATACTGTA
TTTGTTTCCAGCTTCTGTGAATTCGATTTCCGTGTTAGAGGGTGGCGAAG
TCGCTGGTAGTTCTAGTTTCAAAGCTGCTCTGTATCCAGGTTTAAGCTGT
CCTGATTGCGTTGGAGTAAGCTGGACTGTGAAATCGATATCTTGAGAACC
TGCACTGATGAGAGTTGGGTTTAGGTAATATGTTTGTGTGGCTTGTGTTG
GTGATTGGGTTGGAGTGGTTGAAAAACCGTCCGAAATTTCAGCTTTGCCG
GAGCCTACGTTAACATTAGTTGTGATTGAAGATTGGCTCCATGGAAGGCT
GATAGAATAAGTATTTGAGCCTTCGGTGAAAGTTATCATCATATTCGGCG
GTAAACTTGCGGCTGGCATTTGAAGATCGAACTCGGCTTTGTTGTAAGGT
GATAATACAATCGATTGACCTTGCTGTCCTGTCATATTTGGGAATTTGAA
ACTGACTTGAGAAACTCCAATGTTTGTAAAAACAGGTTTCAAGTAATAGG
TCGTGGTCGTNN
Run BLAST on NCBI

transcript from alignment at scaffold_288:624984..626260+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057337 ID=TCONS_00057337|Name=TCONS_00057337|organism=Clytia hemisphaerica|type=transcript|length=1277bp|location=Sequence derived from alignment at scaffold_288:624984..626260+ (Clytia hemisphaerica)
TTGTGGTTGACTGTTTGATGGTACCGAGGGTTGCGTCGATGGAGTAGAAT
CTCCGATAACAGCTTCTCCGTTGCCCACGGTAACGCTAACAGTCTGGCTA
TTATATGGTATGGAGGCTGAGTAGGTTTTCATCGAAGCTCCAGAACCTTC
GTTGAACTCAAGGACCATGTTAGGTGGTTGGCTTGTTGCGGTCGCTGTTG
ATTGAAGACCGTTAATGGTGCCGAAGGGTGGGACGGTGATCGTCTGTCCG
TTCCCTGGTGGGAATTTAAATGTAACTGCAGTGGTACCTTGGTTTTGAAT
CAAAGGTTTGATGGTGTAGGTGGATGTGGAGCCAGTATTGGTTGTTGGTG
GAGAGGTTGTGTCTCCAGAGGTAATTTCAGCTTTTCCGTTGCCAACATTG
ACGTAAATGTTGGAAGTCTTAGATGTAGTCCATGGTAGAGCGATACTGTA
TTTGTTTCCAGCTTCTGTGAATTCGATTTCCGTGTTAGAGGGTGGCGAAG
TCGCTGGTAGTTCTAGTTTCAAAGCTGCTCTGTATCCAGGTTTAAGCTGT
CCTGATTGCGTTGGAGTAAGCTGGACTGTGAAATCGATATCTTGAGAACC
TGCACTGATGAGAGTTGGGTTTAGGTAATATGTTTGTGTGGCTTGTGTTG
GTGATTGGGTTGGAGTGGTTGAAAAACCGTCCGAAATTTCAGCTTTGCCG
GAGCCTACGTTAACATTAGTTGTGATTGAAGATTGGCTCCATGGAAGGCT
GATAGAATAAGTGTTTGAGCCTTCGGTGAAAGTTATCATCATATTTGGCG
GTAAACTTGCGGCTGGCATTTGAAGATCGAACTTGGCTATGTTGTAAGGT
GATAATACAATCGATTGACCTTGCTGTCCTGTCATATTTGGGAATTTGAA
ACTGACTTGAGAAACTCCAATGTTTGTAAAAACAGGTTTCAAATAGTAGG
TCGTGGTTGTTGATGGAGATGCAGTTGTTGTTGTAGAGCTTCCATCGGTT
ATTTGAGCATTGCCGGAGCCTACGTTAACATTAGTTGTGACTGAAGATCG
GCTCCATGGAAGGCTGATAGAATAAGTATTTGAGCCTTCGGTGAAAGTTA
TCATCATATTCGGCGGTAAACTTGCGGCTGGCATTTGAAGATCGAACTCG
GCTTTGTTGTAAGGTGATAATACAATCGATTGACCTTGCTGTCCTGTCAT
ATTTGGGAATTTGAAACTGACTTGAGAAACTCCAATGTTTGTAAAAACAG
GTTTCAAGTAATAGGTCGTGGTCGTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036130XLOC_036130Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057337-exon-scaffold_288-1491911889:624984..625730TCONS_00057337-exon-scaffold_288-1491911889:624984..625730Clytia hemisphaericaexon
TCONS_00057337-exon-scaffold_288-1510915933:624984..625730TCONS_00057337-exon-scaffold_288-1510915933:624984..625730Clytia hemisphaericaexon
TCONS_00057337-exon-scaffold_288-1575043694:624984..625730TCONS_00057337-exon-scaffold_288-1575043694:624984..625730Clytia hemisphaericaexon
TCONS_00057337-exon-scaffold_288-1491911889:626046..626260TCONS_00057337-exon-scaffold_288-1491911889:626046..626260Clytia hemisphaericaexon
TCONS_00057337-exon-scaffold_288-1510915933:626046..626260TCONS_00057337-exon-scaffold_288-1510915933:626046..626260Clytia hemisphaericaexon
TCONS_00057337-exon-scaffold_288-1575043694:626046..626260TCONS_00057337-exon-scaffold_288-1575043694:626046..626260Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_288supercontigscaffold_288:624984..626260 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.683001	0.394442	0	0.28307	0	0	0.475126	0.197931	0.446515	0.560917	0	0.362	0	0.602055	0	0	0.687273	0	0	0	0	0.870833	0.099921	0.219849	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057337 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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