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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057322 ID=TCONS_00057322|Name=TCONS_00057322|organism=Clytia hemisphaerica|type=transcript|length=3317bp
CAACTTCAAAATTATTGGTTAATTCTATataatgaacttttaaataATCA
ACAACGGTACACTAAAAAAATAAGTCTAGTTCTTTAAAATTCTTCCAAAA
CTTGTTTGTAAATATATGCGATTCATATATAAGACATTCACATAAAAACA
CTTTATTATAAATTTCCATTTGCAAAAATGGACGGTTAAGGTTCCGATGA
AATGTGTCGTCTACGATACGTCACCAACGCGAACATGAAGATGAAGAGGA
CAAAAATGACCAGAGTGACCACATTCAATACCATCAATGTTGTTACGTCA
TCTTTTAAAGAGTTCTCAATATCATCTCTCTGCCCCTCGTTCTCCCCTCT
GCCAGGTGTTAAAGTGGTTGTGGTTGTGCCACTAGAAGTTGTAGAGTTGT
TGTCTCCTTGGTAATCGTCAGTTCGTGTTGGATGATAATTATCCGTAGTA
TGGTTCGAAAGTGTTTCAGTGTTATATGTACGATCGTGTTCTTCAGTAGT
AACAAGGAAAGGTCGTCCGGTTGTATCGTGTTCCCTTTTTTCACACAATG
TACCGGTATATGTAAAAAAACATGAACATCTCGCTCCATTTTTATCTTGC
ACACATTTACCAAAATTCCGACACGGGTCTTGCGAACAAACATCACACCC
AATCTTTCCGCCAATGATAAACATAGAAGCTCGATCGCTCAACTTTTGGA
GGTCGTTTGTAGCATTAGAGCGACAATCGCCGATAACGGTAGCTTCTCTC
GTGACTTGTTTGATTGCAGATAAAACGTTACAACTGCACCGAAAATCATT
ATTTGATAAATCCAACACACCGCTTATTTTCTCAGTATTATATCTCAAGA
AATTTTTCGGTAAGTCTGTAAGTTTGGTATTTCGTAAGTTCAGATTACGA
AATTTGTTGAATCCGTTGAACGAGTTTTCGGTTACTTCCTTAAGCGAGTT
TCCCGATAAATCAATAGTTACCAAATCTATCAAGCTCGGGAAAAAGGTAG
GCACCTTAGTAAAACTATTCGTCCCGAGATTTATCGTTTTTAGTTTATTG
GAGAGTTCCAAACGCAATGAGTCATTAAGTTTGTTTCCTTTGAGATTCAG
ATAGCGGAGTTGAGAAAAAGCACTGAACGCATCGACATCGATATGCTGAA
tggaattatgtgaaaaatccaAACTTTGTCCTTGGCGTAAATGATATGGA
CCCGTTGGACTGATTTCAATAACACTAGAGAATCTCCTGATCGTAGTTAA
ACGATTATGACTGCAGTTCAAATTTCCAAGCCAAACATTGGGATTGATCT
TAATGTCGGTTATATCTTCTATCAAATTATGGGAAAGATCAACAGTTTTA
AAATCCTTCTTGATTTCAATGGTTTGGATTTGGTTGTAAGATAAATTGAC
GTACCCTTCAGTGTTTATAAAGTCAAGTACAACTTTGGAAAGGTTATTGA
AACTTAAATCAAGGTACTTTGAATTGAAGGAGGGTAAAGTTTTTTGACAC
GAGTTACTGATATTCACAATATTTGCATTGGATAAATAAAATCTGGACAC
TAACCAAGGCGAAGCGCAGTTGCTGGAGATGTCAACTTCTCGCAGGTACG
ACAAACGACGAAGATCAAGTTCAAAATGAACCAAATCAGATCCTATATTT
TNGCCGATAACGGTAGCTTCTCTCGTGACTTGTTTGATTGCAGATAAAAC
GTTACAACTGCACCGAAAATCATTATTTGATAAATCCAACACACCGCTTA
TTTTCTCAGTATTATATCTCAAGAAATTTTTCGGTAAGTCTGTAAGGTTG
GTATTTCGTAAGTTCAGATTACGAAGTTTGTTGAATCCGTTGAACGAGTT
TTCGGTTACTTCCTTAAGCGAGTTTCCCGATAAATCAATAGTTACCAAAT
CTATCAAGCTCGGGAAAAAGGTAGGCACCTTAGTAAAACTATTCGTCCCG
AGATTTATCGTTTTCAGTTTATTGGAGAGTTCCAAACGCAATGAGTCATT
AAGTTTGTTTCCTTTGAGATTCAGATAGCGGAGTTGAGAAAAAGCACTGA
ACGCATCGAGATCGATATGCTGAAtggaattatgtgaaaaatccaAACTT
TGTCCTTGGCGTAAATGATACGGACCCGTTGGACTGATTTCAATGACATT
AGAGAATCTCCTGATCGTAGTTAGATGATTATGACTGCAGTTCAAATTTN
GGCAAATATTTGAAGTCAGTTGTGTTTAAGCTTTTGAAGTTATTGAAGCT
GAGATCCAAAATACTTAAGTGTTcactatttccaaaaaaatgtcgtGGCA
GTCGATTTATCAAGTTATTGTTTAGACGCAGTTCCTTTAATTTCTTCTTC
GGTAACATTGCAAGTGCATCTCTTGGCAAGGCTGATGTCAAACGTATTCC
ATTATTTGATAGATCCAATTTCTCAAGACTTTTAAAACCTTGAAGCATTT
CTTCATTGATGGTGGAGAGCTGATTAAAGCTGAGATCTAGATCTGCTAAC
AGCCTTGCGTTCTTGGTGATTGGGCCagtaagttttttcaaattgttgtC
CTTTAATAAGATGAGCTGTAATAGATTTGGAGTATTCTGGATGGCTTCGA
ATCCAATAGTTTCCAGGTTCTTGTTACCTTTGAATTCAAGTTTCTTAAGT
CTATAAAATCCATCCATAAAAAATGTAGGGAGCGTTGTCAGGTTGGTGTA
AAGAACTTCCAGCTGTTCTAGTTGTTTTAATTCACTTAATACCTTCATAT
TGATGTTGGTCAAAGTGTTATCGCCATGAATAACCAATTTTCTTAACAAA
TGAAATCCATTCAGTGAAGCAGTGTCCAAGGATCCTGATTGGAGTCGAAG
CTCGAAAAGCGCTGGTAACGGTTCTTTGAATATCTTTCTTTCTGTGATCG
GGTTACTGGTCAAATCCAAATATCTCAATTTGGTAAACTTTGAGATGAGT
TGATCGCTTACAGTGGTAATATAGTTGTTTGCCAAGTTGAGCGATACTAG
ATTATGGATCGGAATGTTTGAAGGAATTTGCGTCATATTCCGATGACTGC
AATCGCATATTTGACCATAAGTGCACTCTCCACGATCAATATACCCATTG
GTGGGCTGTTTTAGAGTAAAAGGTTTATAGCAATATTCACCATATTCACA
CGAACAATTTCCGATGTTAGATTCAGAGCTGGAGACTGGTGCTACAATGA
GTAGCATTACCAGAGGTATGAGATCCAACTTCATCAACTTGACCGTCATT
TCAATTTCTGTTGAAAGAGCTCTCAGACTATAAATAAACTGACAGTCCGA
TAGCACCTAGCTTAAAT Run BLAST on NCBI transcript from alignment at scaffold_288:185983..190315+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057322 ID=TCONS_00057322|Name=TCONS_00057322|organism=Clytia hemisphaerica|type=transcript|length=4333bp|location=Sequence derived from alignment at scaffold_288:185983..190315+ (Clytia hemisphaerica)
CAACTTCAAAATTATTGGTTAATTCTATataatgaacttttaaataATCA
ACAACGGTACACTAAAAAAATAAGTCTAGTTCTTTAAAATTCTTCCAAAA
CTTGTTTGTAAATATATGCGATTCATATATAAGACATTCACATAAAAACA
CTTTATTATAAATTTCCATTTGCAAAAATGGACGGTTAAGGTTCCGATGA
AATGTGTCGTCTACGATACGTCACCAACGCGAACATGAAGATGAAGAGGA
CAAAAATGACCAGAGTGACCACATTCAATACCATCAATGTTGTTACGTCA
TCTTTTAAAGAGTTCTCAATATCATCTCTCTGCCCCTCGTTCTCCCCTCT
GCCAGGTGTTAAAGTGGTTGTGGGTGCGCCGCCAGAAGTTGTAGAGTTGT
TGTCTCCTTGGTAATCGTCAGTTCGTGTTGGATGATAATTATCCGTAGTA
TGGTTCGAAAGTGTTTCAGTGTTATATGTACGATCGTGTTCTTCAGTAGT
AACAAGGAAAGGTCGTCCGGTTGTATCGTGTTCCCTTTTTTCACACAATG
TACCGGTATATGTAAAAAAACATGAACATCTCGCTCCATTTTTATCTTGC
ACACATTTACCAAAATTCCGACACGGGTCTTGCGAACAAACATCACACCC
AATCTTTCCGCCAATGATAAACATAGAAGCTCGATCGCTCAACTTTTGGA
GGTCGTTTGTAGCATTAGAGCGACAATCGCCGATAACGGTAGCTTCTCTC
GTGACTTGTTTGATTGCAGATAAAACGTTACAACTGCACCGAAAATCATT
ATTTGATAAATCCAACACACCGCTTATTTTCTCAGTATTATATCTCAAGA
AATTTTTCGGTAAGTCTGTAAGTTTGGTATTTCGTAAGTTCAGATTACGA
AATTTGTTGAATCCGTTGAACGAGTTTTCGGTTACTTCCTTAAGCGAGTT
TCCCGATAAATCAATAGTTACCAAATCTATCAAGCTCGGGAAAANAGAAA
AACACCTTTGTAATATTTTCCACAACTTCAAAATTATTGGGTATataatg
aacttttaaataATCAACAACGGTACACTAAAAAATAAGTCTAGTTGTTT
AAAATTCTTCCAAAACTTGTTTGTAAATATATGCGATTCATATATAAGAC
ATTAACATAAAAAACACTTTATTATAAATTTCCATTTGCAGAAATGGAGG
GTTTAGGTTCCGATGAAATCTGTCGTCTACGATACGTCACGAAAGTGAAC
ATGAAGATGAAGAGGACAAGAATGACCAGAGTGACCACATTCAATACCAT
CAATGTTGATACGTCATCTTTTAAAGATTTCTCAGAATCATCTCTCTGTC
CATCGTTCTCCCCTACGCCAGGTGTTAAAGTGGTTGTGGTTGTGCCACTA
GAAGTTGTAGAGTTGTTGTCTCCTTGGTAATCGTCAGTTCGTGTTGGATG
ATAATTATCCGTAGTATGGTTCGAAAGTGTTTCAGTGTTATATGTACGAT
CGTGTTCTTCAGTAGTAACAAGGAAAGGTCGTCCGGTTGTATCGTGTTCC
CTTTTTTCACACAATGTACCGGTATATGTAAAAAAACATGAACATCTCGC
TCCATTTTTATCTTGCACACATTTACCAAAATTCCGACACGGGTCTTGCG
AACAAACATCACACCCAATCTTTCCGCCAATGATAAACATAGAAGCTCGA
TCGCTCAACTTTTGGAGGTCGTTTGTAGCATTAGAGCGACAATCGCCGAT
AACGGTAGCTTCTCTCGTGACTTGTTTGATTGCAGATAAAACGTTACAAC
TGCACCGAAAATCATTATTTGATAAATCCAACACACCGCTTATTTTCTCA
GTATTATATCTCAAGAAATTTTTCGGTAAGTCTGTAAGTTTGGTATTTCG
TAAGTTCAGATTACGAAATTTGTTGAATCCGTTGAACGAGTTTTCGGTTA
CTTCCTTAAGCGAGTTTCCCGATAAATCAATAGTTACCAAATCTATCAAG
CTCGGGAAAAAGGTAGGCACCTTAGTAAAACTATTCGTCCCGAGATTTAT
CGTTTTTAGTTTATTGGAGAGTTCCAAACGCAATGAGTCATTAAGTTTGT
TTCCTTTGAGATTCAGATAGCGGAGTTGAGAAAAAGCACTGAACGCATCG
ACATCGATATGCTGAAtggaattatgtgaaaaatccaAACTTTGTCCTTG
GCGTAAATGATATGGACCCGTTGGACTGATTTCAATAACACTAGAGAATC
TCCTGATCGTAGTTAAACGATTATGACTGCAGTTCAAATTTCCAAGCCAA
ACATTGGGATTGATCTTAATGTCGGTTATATCTTCTATCAAATTATGGGA
AAGATCAACAGTTTTAAAATCCTTCTTGATTTCAATGGTTTGGATTTGGT
TGTAAGATAAATTGACGTACCCTTCAGTGTTTATAAAGTCAAGTACAACT
TTGGAAAGGTTATTGAAACTTAAATCAAGGTACTTTGAATTGAAGGAGGG
TAAAGTTTTTTGACACGAGTTACTGATATTCACAATATTTGCATTGGATA
AATAAAATCTGGACACTAACCAAGGCGAAGCGCAGTTGCTGGAGATGTCA
ACTTCTCGCAGGTACGACAAACGACGAAGATCAAGTTCAAAATGAACCAA
ATCAGATCCTATATTTTNGCCGATAACGGTAGCTTCTCTCGTGACTTGTT
TGATTGCAGATAAAACGTTACAACTGCACCGAAAATCATTATTTGATAAA
TCCAACACACCGCTTATTTTCTCAGTATTATATCTCAAGAAATTTTTCGG
TAAGTCTGTAAGGTTGGTATTTCGTAAGTTCAGATTACGAAGTTTGTTGA
ATCCGTTGAACGAGTTTTCGGTTACTTCCTTAAGCGAGTTTCCCGATAAA
TCAATAGTTACCAAATCTATCAAGCTCGGGAAAAAGGTAGGCACCTTAGT
AAAACTATTCGTCCCGAGATTTATCGTTTTCAGTTTATTGGAGAGTTCCA
AACGCAATGAGTCATTAAGTTTGTTTCCTTTGAGATTCAGATAGCGGAGT
TGAGAAAAAGCACTGAACGCATCGAGATCGATATGCTGAAtggaattatg
tgaaaaatccaAACTTTGTCCTTGGCGTAAATGATACGGACCCGTTGGAC
TGATTTCAATGACATTAGAGAATCTCCTGATCGTAGTTAGATGATTATGA
CTGCAGTTCAAATTTNGGCAAATATTTGAAGTCAGTTGTGTTTAAGCTTT
TGAAGTTATTGAAGCTGAGATCCAAAATACTTAAGTGTTcactatttcca
aaaaaatgtcgtGGCAGTCGATTTATCAAGTTATTGTTTAGACGCAGTTC
CTTTAATTTCTTCTTCGGTAACATTGCAAGTGCATCTCTTGGCAAGGCTG
ATGTCAAACGTATTCCATTATTTGATAGATCCAATTTCTCAAGACTTTTA
AAACCTTGAAGCATTTCTTCATTGATGGTGGAGAGCTGATTAAAGCTGAG
ATCTAGATCTGCTAACAGCCTTGCGTTCTTGGTGATTGGGCCagtaagtt
ttttcaaattgttgtCCTTTAATAAGATGAGCTGTAATAGATTTGGAGTA
TTCTGGATGGCTTCGAATCCAATAGTTTCCAGGTTCTTGTTACCTTTGAA
TTCAAGTTTCTTAAGTCTATAAAATCCATCCATAAAAAATGTAGGGAGCG
TTGTCAGGTTGGTGTAAAGAACTTCCAGCTGTTCTAGTTGTTTTAATTCA
CTTAATACCTTCATATTGATGTTGGTCAAAGTGTTATCGCCATGAATAAC
CAATTTTCTTAACAAATGAAATCCATTCAGTGAAGCAGTGTCCAAGGATC
CTGATTGGAGTCGAAGCTCGAAAAGCGCTGGTAACGGTTCTTTGAATATC
TTTCTTTCTGTGATCGGGTTACTGGTCAAATCCAAATATCTCAATTTGGT
AAACTTTGAGATGAGTTGATCGCTTACAGTGGTAATATAGTTGTTTGCCA
AGTTGAGCGATACTAGATTATGGATCGGAATGTTTGAAGGAATTTGCGTC
ATATTCCGATGACTGCAATCGCATATTTGACCATAAGTGCACTCTCCACG
ATCAATATACCCATTGGTGGGCTGTTTTAGAGTAAAAGGTTTATAGCAAT
ATTCACCATATTCACACGAACAATTTCCGATGTTAGATTCAGAGCTGGAG
ACTGGTGCTACAATGAGTAGCATTACCAGAGGTATGAGATCCAACTTCAT
CAACTTGACCGTCATTTCAATTTCTGTTGAAAGAGCTCTCAGACTATAAA
TAAACTGACAGTCCGATAGCACCTAGCTTAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057322-exon-scaffold_288-1491911889:185983..186337 | TCONS_00057322-exon-scaffold_288-1491911889:185983..186337 | Clytia hemisphaerica | exon |
| TCONS_00057322-exon-scaffold_288-1510915933:185983..186337 | TCONS_00057322-exon-scaffold_288-1510915933:185983..186337 | Clytia hemisphaerica | exon |
| TCONS_00057322-exon-scaffold_288-1575043694:185983..186337 | TCONS_00057322-exon-scaffold_288-1575043694:185983..186337 | Clytia hemisphaerica | exon |
| TCONS_00057322-exon-scaffold_288-1491911889:187354..190315 | TCONS_00057322-exon-scaffold_288-1491911889:187354..190315 | Clytia hemisphaerica | exon |
| TCONS_00057322-exon-scaffold_288-1510915933:187354..190315 | TCONS_00057322-exon-scaffold_288-1510915933:187354..190315 | Clytia hemisphaerica | exon |
| TCONS_00057322-exon-scaffold_288-1575043694:187354..190315 | TCONS_00057322-exon-scaffold_288-1575043694:187354..190315 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_288 | supercontig | scaffold_288:185983..190315 + |
Blast
The following BLAST results are available for this feature:
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