TCONS_00057310 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057310
Unique NameTCONS_00057310
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length452

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057310 ID=TCONS_00057310|Name=TCONS_00057310|organism=Clytia hemisphaerica|type=transcript|length=452bp
GGAATGATATTGGTCGGTTGTTTTGGGAGAAGTGCATTGAAGTGCTAATT
ATGTTATTTTGATATGCTTTATTTACACGATACTGTATGGTATTTTTTGT
AATTGTTTATTAACTATAAATgtattgatttcaaaattttgattggcATA
AAAGAGTAATCAACCATCATTTGGCTACAGAGAGAGATAGAGAGAGacat
atttttgtcattttgtcatcATGAAAAATGTATAGATACACATGTTGGCT
GGTAGCAGGAGTTGTTTTCCTATGCAGGATGTTTGACTTTCCGCTTATTC
TACATGTAGATATACGATTTCACGTATTTGATTTCATTTCAATGTGAATG
TTACATTTTTTTGAACCGTGCGCTTTTATGAGGAATTTATTCAAATGCTC
GATTATTAGTTTATTACTAttttacagttgacgctctctaattcgatttt
cc
Run BLAST on NCBI

transcript from alignment at scaffold_286:933979..934430

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057310 ID=TCONS_00057310|Name=TCONS_00057310|organism=Clytia hemisphaerica|type=transcript|length=452bp|location=Sequence derived from alignment at scaffold_286:933979..934430 (Clytia hemisphaerica)
ggaaaatcgaattagagagcgtcaactgtaaaaTAGTAATAAACTAATAA
TCGAGCATTTGAATAAATTCCTCATAAAAGCGCACGGTTCAAAAAAATGT
AACATTCACATTGAAATGAAATCAAATACGTGAAATCGTATATCTACATG
TAGAATAAGCGGAAAGTCAAACATCCTGCATAGGAAAACAACTCCTGCTA
CCAGCCAACATGTGTATCTATACATTTTTCATgatgacaaaatgacaaaa
atatgtCTCTCTCTATCTCTCTCTGTAGCCAAATGATGGTTGATTACTCT
TTTATgccaatcaaaattttgaaatcaatacATTTATAGTTAATAAACAA
TTACAAAAAATACCATACAGTATCGTGTAAATAAAGCATATCAAAATAAC
ATAATTAGCACTTCAATGCACTTCTCCCAAAACAACCGACCAATATCATT
CC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036115XLOC_036115Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057310-exon-scaffold_286-1491911889:933979..934430TCONS_00057310-exon-scaffold_286-1491911889:933979..934430Clytia hemisphaericaexon
TCONS_00057310-exon-scaffold_286-1510915933:933979..934430TCONS_00057310-exon-scaffold_286-1510915933:933979..934430Clytia hemisphaericaexon
TCONS_00057310-exon-scaffold_286-1575043694:933979..934430TCONS_00057310-exon-scaffold_286-1575043694:933979..934430Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_286supercontigscaffold_286:933979..934430 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.437997	0.71186	1.48777	0.808638	0	0	0	0	0.246061	0	0	0.486172	0.679695	2.42013	2.15548	2.13522	1.09601	0.674024	0	0.649623	0	0.206559	0.669598	0.304381	0.156753	0.139898	0.800774	0.427304	0.64819	0.495302
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057310 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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