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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057309 ID=TCONS_00057309|Name=TCONS_00057309|organism=Clytia hemisphaerica|type=transcript|length=1945bp
GTGGTATCAAGATTAATTTgatcaatttatttttcattgctaATGGGCCT
AAGTCATCATCATAAAATCatacaaaaagtgtcaaaaaatgtCTATGAAA
AGTATCTTTAAAATGTTTCCAAAAGTTTTGTGTCAACAATGACTTTGAAT
TCGGGTACCTTTCAAAGAAGGAGCAGAATTTTCTCTCCGTCTTggttcag
tcattttctttattCCCACAAAAGAAGCCCAACTATTAGCACGTGCTAAC
CCTATAGATTCCAATGAAATACGACTAGCAATTTTTGATCCTCGTCGTAT
TCCTTTATACCTTTTTCTATAAGGTGAATCAGCACTTGAAAAACTCGGTA
AAGAGTGTTTCCTTGCTTGAAACAACTCGGTTATGTCACGTTTGGATGAT
GTCTTTGATGACGAAGGTCGAGTTGGTAACTCGGGATATTCTGATTCGTC
ATTTTCACAAGGTTGTTTTTTACTATTCAGTTCCACAACCTCGGTATATT
CAGTCGGTGTCTTCTGACCGTCTTCACCCAAATAAAGCTCTACTTCCCTA
TCCTCGAAATCAAGTGCTTCCATACTCTTTGCTAGACTAGCCACCCCGTT
TATCGATCTCTCTAAAGGTTCTAAATCAGTACGTTCGACACTTAAGACAT
CTTCGCATGACATACTTTTGAAGCGATCATTCAAAGTCATTTTACTTGCA
GTAGAACTATTCAAATCAATCGACTTTGGTACAactattatctttttaac
gccATCAATCGAATCAATATCATCCACATCTTCAATATTAATCGATAATT
TAGTCGACATTTCCGATAATTGTACATCACTCATGCTATCcctcacaaat
cgattttcaaCCACACTATCCTTCACATTAACATCTTTCTTGACAGCGTC
AGTCTTATTCGTATCCGTCTTGACATGTTTACTGCCGCCGTATAAACGCC
GTGATATCCATGACGATGATTTTGATTTATGTAGACTTTGTAAACGCTCA
TTAAATGAACGGCTACGTTGCGGTAAAAGATCTTTAGTTGATAATGTCTt
cattgatttttgattattgttATTGGAACGCTTTTCAACCCTAGGTGTCG
AATTATCGAGTAACCCACTATCTATTGATTTACTTCGCGTTAAATTCCCT
TTTTTATGGTTAGTAATACTACCGTTTGCAGATCGATTTAAAGTTCCTCC
GTTCGCTGATCGATTCAGTGATTGTGTTTGGTTTCTAGTCCTACTTATTT
TACCGTTAGCCTGCGCTCCATTTTTAGCCAGGTCAGTCGGCTTCCGCGGT
TTTATATTACGCTGAACAGTCGGGATCATTTTTGGGACTGGGCCTGGTGG
CTTACCAGACGCACAAAGACGTATGGCGTATAACCACCTGTACCTATGAA
GTTTAGTCTCACATTTGAACTGGTATTTTGCTTTCCCTGTTTCAATCCAA
AACGGAAAACgataacatttttttttatggTCATCAAATCCGCAAAATGT
TTTGTTTGATATTTCGATCATGGTCACATTATGTGGAATAATTTGTCCAG
TCTTGCTGTCCTTTCTGTTAAATACCAAATGTTTATCAACTAAAACTGCA
TAATATTCGATCCACGTTTTTCCTTCTTTCTTTAGGATAACTTCTTTAtg
gtatatttttgttttgtcatATTGTATGCCTGGCAATTCCgccattttgt
caatattttccaaTAAATCTCAAAGTCAAAAAACCATTACCTGAAGGAGA
TTACTAATAAATTTCAATTAACCTCCTTGATGCATAGAGTAAGATGCCAC
TGTTTTGTAGGATAATTATGacatgtcaattttttttacccttTGAAAAA
GATACTAACAACTCCTTGGTTTTTTCTTTCAACTTCTAAAATAATCacga
aaaataatttgaaagaattcGTCCAACCATAACATAACTCACTTC Run BLAST on NCBI protein sequence of TCONS_00057309-protein >TCONS_00057309-protein ID=TCONS_00057309-protein|Name=TCONS_00057309-protein|organism=Clytia hemisphaerica|type=polypeptide|length=520bp
MAELPGIQYDKTKIYHKEVILKKEGKTWIEYYAVLVDKHLVFNRKDSKTG
QIIPHNVTMIEISNKTFCGFDDHKKKCYRFPFWIETGKAKYQFKCETKLH
RYRWLYAIRLCASGKPPGPVPKMIPTVQRNIKPRKPTDLAKNGAQANGKI
SRTRNQTQSLNRSANGGTLNRSANGSITNHKKGNLTRSKSIDSGLLDNST
PRVEKRSNNNNQKSMKTLSTKDLLPQRSRSFNERLQSLHKSKSSSWISRR
LYGGSKHVKTDTNKTDAVKKDVNVKDSVVENRFVRDSMSDVQLSEMSTKL
SINIEDVDDIDSIDGVKKIIVVPKSIDLNSSTASKMTLNDRFKSMSCEDV
LSVERTDLEPLERSINGVASLAKSMEALDFEDREVELYLGEDGQKTPTEY
TEVVELNSKKQPCENDESEYPELPTRPSSSKTSSKRDITELFQARKHSLP
SFSSADSPYRKRYKGIRRGSKIASRISLESIGLARANSWASFVGIKKMTE
PRRRENSAPSLKGTRIQSHC Run BLAST on NCBI transcript from alignment at scaffold_286:897683..899627 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057309 ID=TCONS_00057309|Name=TCONS_00057309|organism=Clytia hemisphaerica|type=transcript|length=1945bp|location=Sequence derived from alignment at scaffold_286:897683..899627 (Clytia hemisphaerica)
GAAGTGAGTTATGTTATGGTTGGACgaattctttcaaattatttttcgtG
ATTATTTTAGAAGTTGAAAGAAAAAACCAAGGAGTTGTTAGTATCTTTTT
CAaagggtaaaaaaaattgacatgtCATAATTATCCTACAAAACAGTGGC
ATCTTACTCTATGCATCAAGGAGGTTAATTGAAATTTATTAGTAATCTCC
TTCAGGTAATGGTTTTTTGACTTTGAGATTTAttggaaaatattgacaaa
atggcGGAATTGCCAGGCATACAATatgacaaaacaaaaatataccaTAA
AGAAGTTATCCTAAAGAAAGAAGGAAAAACGTGGATCGAATATTATGCAG
TTTTAGTTGATAAACATTTGGTATTTAACAGAAAGGACAGCAAGACTGGA
CAAATTATTCCACATAATGTGACCATGATCGAAATATCAAACAAAACATT
TTGCGGATTTGATGAccataaaaaaaaatgttatcGTTTTCCGTTTTGGA
TTGAAACAGGGAAAGCAAAATACCAGTTCAAATGTGAGACTAAACTTCAT
AGGTACAGGTGGTTATACGCCATACGTCTTTGTGCGTCTGGTAAGCCACC
AGGCCCAGTCCCAAAAATGATCCCGACTGTTCAGCGTAATATAAAACCGC
GGAAGCCGACTGACCTGGCTAAAAATGGAGCGCAGGCTAACGGTAAAATA
AGTAGGACTAGAAACCAAACACAATCACTGAATCGATCAGCGAACGGAGG
AACTTTAAATCGATCTGCAAACGGTAGTATTACTAACCATAAAAAAGGGA
ATTTAACGCGAAGTAAATCAATAGATAGTGGGTTACTCGATAATTCGACA
CCTAGGGTTGAAAAGCGTTCCAATaacaataatcaaaaatcaatgaAGAC
ATTATCAACTAAAGATCTTTTACCGCAACGTAGCCGTTCATTTAATGAGC
GTTTACAAAGTCTACATAAATCAAAATCATCGTCATGGATATCACGGCGT
TTATACGGCGGCAGTAAACATGTCAAGACGGATACGAATAAGACTGACGC
TGTCAAGAAAGATGTTAATGTGAAGGATAGTGTGGttgaaaatcgatttg
tgaggGATAGCATGAGTGATGTACAATTATCGGAAATGTCGACTAAATTA
TCGATTAATATTGAAGATGTGGATGATATTGATTCGATTGATggcgttaa
aaagataatagtTGTACCAAAGTCGATTGATTTGAATAGTTCTACTGCAA
GTAAAATGACTTTGAATGATCGCTTCAAAAGTATGTCATGCGAAGATGTC
TTAAGTGTCGAACGTACTGATTTAGAACCTTTAGAGAGATCGATAAACGG
GGTGGCTAGTCTAGCAAAGAGTATGGAAGCACTTGATTTCGAGGATAGGG
AAGTAGAGCTTTATTTGGGTGAAGACGGTCAGAAGACACCGACTGAATAT
ACCGAGGTTGTGGAACTGAATAGTAAAAAACAACCTTGTGAAAATGACGA
ATCAGAATATCCCGAGTTACCAACTCGACCTTCGTCATCAAAGACATCAT
CCAAACGTGACATAACCGAGTTGTTTCAAGCAAGGAAACACTCTTTACCG
AGTTTTTCAAGTGCTGATTCACCTTATAGAAAAAGGTATAAAGGAATACG
ACGAGGATCAAAAATTGCTAGTCGTATTTCATTGGAATCTATAGGGTTAG
CACGTGCTAATAGTTGGGCTTCTTTTGTGGGaataaagaaaatgactgaa
ccAAGACGGAGAGAAAATTCTGCTCCTTCTTTGAAAGGTACCCGAATTCA
AAGTCATTGTTGACACAAAACTTTTGGAAACATTTTAAAGATACTTTTCA
TAGacattttttgacactttttgtatGATTTTATGATGATGACTTAGGCC
CATtagcaatgaaaaataaattgatcAAATTAATCTTGATACCAC Coding sequence (CDS) from alignment at scaffold_286:897683..899627 >TCONS_00057309 ID=TCONS_00057309|Name=TCONS_00057309|organism=Clytia hemisphaerica|type=CDS|length=1563bp|location=Sequence derived from alignment at scaffold_286:897683..899627 (Clytia hemisphaerica)
atggcGGAATTGCCAGGCATACAATatgacaaaacaaaaatataccaTAA
AGAAGTTATCCTAAAGAAAGAAGGAAAAACGTGGATCGAATATTATGCAG
TTTTAGTTGATAAACATTTGGTATTTAACAGAAAGGACAGCAAGACTGGA
CAAATTATTCCACATAATGTGACCATGATCGAAATATCAAACAAAACATT
TTGCGGATTTGATGAccataaaaaaaaatgttatcGTTTTCCGTTTTGGA
TTGAAACAGGGAAAGCAAAATACCAGTTCAAATGTGAGACTAAACTTCAT
AGGTACAGGTGGTTATACGCCATACGTCTTTGTGCGTCTGGTAAGCCACC
AGGCCCAGTCCCAAAAATGATCCCGACTGTTCAGCGTAATATAAAACCGC
GGAAGCCGACTGACCTGGCTAAAAATGGAGCGCAGGCTAACGGTAAAATA
AGTAGGACTAGAAACCAAACACAATCACTGAATCGATCAGCGAACGGAGG
AACTTTAAATCGATCTGCAAACGGTAGTATTACTAACCATAAAAAAGGGA
ATTTAACGCGAAGTAAATCAATAGATAGTGGGTTACTCGATAATTCGACA
CCTAGGGTTGAAAAGCGTTCCAATaacaataatcaaaaatcaatgaAGAC
ATTATCAACTAAAGATCTTTTACCGCAACGTAGCCGTTCATTTAATGAGC
GTTTACAAAGTCTACATAAATCAAAATCATCGTCATGGATATCACGGCGT
TTATACGGCGGCAGTAAACATGTCAAGACGGATACGAATAAGACTGACGC
TGTCAAGAAAGATGTTAATGTGAAGGATAGTGTGGttgaaaatcgatttg
tgaggGATAGCATGAGTGATGTACAATTATCGGAAATGTCGACTAAATTA
TCGATTAATATTGAAGATGTGGATGATATTGATTCGATTGATggcgttaa
aaagataatagtTGTACCAAAGTCGATTGATTTGAATAGTTCTACTGCAA
GTAAAATGACTTTGAATGATCGCTTCAAAAGTATGTCATGCGAAGATGTC
TTAAGTGTCGAACGTACTGATTTAGAACCTTTAGAGAGATCGATAAACGG
GGTGGCTAGTCTAGCAAAGAGTATGGAAGCACTTGATTTCGAGGATAGGG
AAGTAGAGCTTTATTTGGGTGAAGACGGTCAGAAGACACCGACTGAATAT
ACCGAGGTTGTGGAACTGAATAGTAAAAAACAACCTTGTGAAAATGACGA
ATCAGAATATCCCGAGTTACCAACTCGACCTTCGTCATCAAAGACATCAT
CCAAACGTGACATAACCGAGTTGTTTCAAGCAAGGAAACACTCTTTACCG
AGTTTTTCAAGTGCTGATTCACCTTATAGAAAAAGGTATAAAGGAATACG
ACGAGGATCAAAAATTGCTAGTCGTATTTCATTGGAATCTATAGGGTTAG
CACGTGCTAATAGTTGGGCTTCTTTTGTGGGaataaagaaaatgactgaa
ccAAGACGGAGAGAAAATTCTGCTCCTTCTTTGAAAGGTACCCGAATTCA
AAGTCATTGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057309-exon-scaffold_286-1491911889:897683..899627 | TCONS_00057309-exon-scaffold_286-1491911889:897683..899627 | Clytia hemisphaerica | exon |
| TCONS_00057309-exon-scaffold_286-1510915933:897683..899627 | TCONS_00057309-exon-scaffold_286-1510915933:897683..899627 | Clytia hemisphaerica | exon |
| TCONS_00057309-exon-scaffold_286-1575043694:897683..899627 | TCONS_00057309-exon-scaffold_286-1575043694:897683..899627 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_286 | supercontig | scaffold_286:897683..899627 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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