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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057307 ID=TCONS_00057307|Name=TCONS_00057307|organism=Clytia hemisphaerica|type=transcript|length=3496bp
tttggccacaaaaactctttgtcattttgtttttataaaacaatCATATA
ACAAACTATGATTATAATAACCTACTCTTATCACCCTTTCGAACTGATTT
GGATTGACACCAAAGAGAAAAGAGacaaactttcacgatttttaatgact
taataAACAAATCTGTCAAAAATGACAATTATGAGGCTGTCAGTACAGAA
AgaataaactaaaaatttgtCACGAAATTTGATTTTCGAGATGTGATATC
GtgacaaaaaaatgtttgacaatttaattttttatctataaCTTTGTTTA
CAATGTGGCAAATATAGGAAGGGTTTAAAATTTagttacttttttttcaa
acaaacactAGAAGTATAAGAAGTTTTATATTTgagaaacttaaattttg
atgtcaCTTCGAAATCATCATTGATACAAATCTCGCAATGAAGAACTAGT
TGCTTCAATTCAACTTGCATACATATTGTATTGAAATGTAGACGGTGTAC
CTTGCATCTCTGATTTGTAAAATCAAAGATTCGTTATCCATGAAGCTTGG
AGCTACTTTGTGATAATAACCGCATCAGAGATTGGTTTGCAGCTGGTCAT
ATTTTACATACTTTTACATGCTACCCCTTTAAATACCTTGGTATAAATGC
TAATTGCTATTGATTATATTATCTTTTACCACCATTTTAAGCATGGATGA
TATATCTATGGTAGTTCTTTTATTGGCTCTCATTGTATTATTTTTCTTGG
CTCGTGGACTTGTTGGATTGAAGCTATTTCAACGTTGCgtatttttatcc
aaaaagaaCGGGCAAAGACCAAACCTGATCGTCATTTCAAAATCTGAAGA
TGTCACAAACTCCAAGAAATACATTTTCGATAATGCCATCAAAACGTATC
AACTACCTTTGAAGTTTCTGGTAATTCTACCAAAGCCATCAGTGAACACT
GTATTCACCATGTACATTGGAAAACCTATCGAAGATAAAACTCAACCATA
CAACAAACTATGTCCTTTATGCTTAGACGAGTTGAATACAATGACTACAA
ACTGTTTTACTGTCAATTGTGGACATTCTTATCATCAAGTATGTGCTGTT
AATCTCTTTCTGAAAGAGACTAAAACATGTCCTTTATGCAAACAAGGGAT
TGAAAAACGCGTTAAAAAGGTCTTTGGAAAAGAGACAAAGATTGACACAT
TAGCTAAGTTCTATGGCTCTACTATATCGACAACTTTAAATTCTGAGGCA
GATTTAGTTTGATTAAACACTATAAAGGACTTGAAGACCCTTGAAgttca
aaacatttttggaacaaaaaggaaaaaactgtGTTTCATACTTTCAGATG
ATATCCAAAATAGTATATTAGGTACATTTTGTAAATATAATTtgtcataa
tataaaaaatactaCTACAAGGTGTCcctaatacactcttctcgagatgt
tTTTGCGCGGCATGAAAACGAGGCCAGCAATGATATTTTGTAAACATTAT
ACAAAGTGGCGAACGAAAGCGGTGCTGTTCAAGAGCTTTTTGGATGAACT
TCTTCTAAACACTGAAAGATCTATTGAAATTATTGttgaaaaagaacaaa
acattgaatGGACTAAACATTTAACTAATCttcctttgtttacaaaaaga
gAGATCGAATTACATCGACAAAAGAGTGGCAAAAATGCACGATCAATCAT
CAAAACAAGAGATCAaggtttaaaattcaaaaacgaaGGATATGTTATAA
AAGATCAAATGTATACAAAGACTTCCTCACTATTTTTTACTGTCAAAGCT
GAATGTAGATCGAGCATgatacaagaaaaaaaaacatttggaaGTTGTTC
TAAATAGACTTAATGGAGAAGTTTTCAGTGGAACGTGTGATTGTGCTGCA
GGCAATTCTTCGTATTGCAATCATATAATGGCTCTGTTATTTGAACTAGC
AGATTTTTCGTTACGTGAGATAAAGACAGTTCCTGAGGATATTGCCTGCA
CAAGCGGGCCACGGCAATGGGGAACCCACCCCTCGGACAAGTTAAAGTAT
CCTGAGGCGGTCATGGACATTTCTATTCGAAAAGGAAACAGCAGAGGTGT
TTCAAGCACTCTTTACAACCCACGTATTAAcacaaaaattgacaatttgG
TACATAGGGCTGCCAAAGCCCATTTGAACCTTCTTCNGTGGATTTTGTTT
AGGGTTAGTTGGGATCTTGAAAAATCCAATTTCAGTTTTGGTCATGTCAA
TGTTATAAAAACTGCTCTTGCATTCGGGTATACAACAATATGCACCTTTT
CctcctttcaaaacttttccaggTCGCGCAGCAGACGATCAAGCATACTC
CTCAGAAGCCATTTTTAACTAAAGACACATAAAATTTTGTTTCTATTCAC
TGAAAATCTTTACTCATTTTGGTTTTTTCTTCTATAAACAAacactaaat
tttttttatattctaaTCCCTCATACCATCCATTCCATAAAAAACTTCAC
AGAAAGATCAATTTTCTCACAAAAGAAAGCatattattttcattcaaatt
tcttgTGTAAACatataaagaataaataataagaaaaattcaaaggaatg
agaaaagaaaagagaaaagaagaCATATTTTGTAAACTGTTATGGGAATT
TataagaggcccccccagcggttggcgtgatggagggtttttcgtggNAT
GGGAATTTATAAGATTTCCCgctagaaaaaaagtttgttttgatttttat
cattTCTGGCCTCGTTTTCATGCCGAGCGAAaacatctcgagaagagtgt
attaaagtatcgagtcgaaacacaactatgagtagaaagttttatgtgcg
tgttcacaaaattgtatcttaagctctccctcttttttctttgtcattac
gattaatttatacgttgtaactacctttagtaataagcctgtgtgatgga
gaacgttcttatattttagcgataacacacacaaacttttctactcaatc
gcatgttcaaactcgatactttaattagggacaccctgtatatcaATACA
AAATCCTTAGCGAAGGTGCAATTGAAAAACTATAGGGGATGTGGTTCCAG
GGTTGAGACTTTTCGCGGCAATGATTTCTTGTTCTGCAGTTTTTCCCGAA
ATCCTGATCTACCGACTTTATGGATTGAAATTATACAGATTAAGTGGTGT
TTCGGTGCAGTGGAGCTTTTTAATTAAGTCTGGGTTGAAATTCTCcatca
aaattaaatcaataCATAAAATCGACGGAATGAGGTCCTCGGAAGCAACT
AAGTTTGACAAGACTCGACCGGGtttgtgatacaggggtgtatatgaaaa
aaattcagtaataggggggggtttgtactttttcggtgtgacgggattgg
cccttttatagtacggtattacgggatttgacgaaaaaagagacgggaaa
acggtattttaaaatcagacggtgacggtatttaggtacatttttg Run BLAST on NCBI protein sequence of TCONS_00057307-protein >TCONS_00057307-protein ID=TCONS_00057307-protein|Name=TCONS_00057307-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
MDDISMVVLLLALIVLFFLARGLVGLKLFQRCVFLSKKNGQRPNLIVISK
SEDVTNSKKYIFDNAIKTYQLPLKFLVILPKPSVNTVFTMYIGKPIEDKT
QPYNKLCPLCLDELNTMTTNCFTVNCGHSYHQVCAVNLFLKETKTCPLCK
QGIEKRVKKVFGKETKIDTLAKFYGSTISTTLNSEADLV Run BLAST on NCBI transcript from alignment at scaffold_286:877927..881422 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057307 ID=TCONS_00057307|Name=TCONS_00057307|organism=Clytia hemisphaerica|type=transcript|length=3496bp|location=Sequence derived from alignment at scaffold_286:877927..881422 (Clytia hemisphaerica)
caaaaatgtacctaaataccgtcaccgtctgattttaaaataccgttttc
ccgtctcttttttcgtcaaatcccgtaataccgtactataaaagggccaa
tcccgtcacaccgaaaaagtacaaacccccccctattactgaattttttt
catatacacccctgtatcacaaaCCCGGTCGAGTCTTGTCAAACTTAGTT
GCTTCCGAGGACCTCATTCCGTCGATTTTATGtattgatttaattttgat
gGAGAATTTCAACCCAGACTTAATTAAAAAGCTCCACTGCACCGAAACAC
CACTTAATCTGTATAATTTCAATCCATAAAGTCGGTAGATCAGGATTTCG
GGAAAAACTGCAGAACAAGAAATCATTGCCGCGAAAAGTCTCAACCCTGG
AACCACATCCCCTATAGTTTTTCAATTGCACCTTCGCTAAGGATTTTGTA
Ttgatatacagggtgtccctaattaaagtatcgagtttgaacatgcgatt
gagtagaaaagtttgtgtgtgttatcgctaaaatataagaacgttctcca
tcacacaggcttattactaaaggtagttacaacgtataaattaatcgtaa
tgacaaagaaaaaagagggagagcttaagatacaattttgtgaacacgca
cataaaactttctactcatagttgtgtttcgactcgatactttaatacac
tcttctcgagatgttTTCGCTCGGCATGAAAACGAGGCCAGAaatgataa
aaatcaaaacaaactttttttctagcGGGAAATCTTATAAATTCCCATNc
cacgaaaaaccctccatcacgccaaccgctgggggggcctcttatAAATT
CCCATAACAGTTTACAAAATATGtcttcttttctcttttcttttctcatt
cctttgaatttttcttattatttattctttatatGTTTACAcaagaaatt
tgaatgaaaataatatGCTTTCTTTTGTGAGAAAATTGATCTTTCTGTGA
AGTTTTTTATGGAATGGATGGTATGAGGGAttagaatataaaaaaaattt
agtgtTTGTTTATAGAAGAAAAAACCAAAATGAGTAAAGATTTTCAGTGA
ATAGAAACAAAATTTTATGTGTCTTTAGTTAAAAATGGCTTCTGAGGAGT
ATGCTTGATCGTCTGCTGCGCGAcctggaaaagttttgaaaggagGAAAA
GGTGCATATTGTTGTATACCCGAATGCAAGAGCAGTTTTTATAACATTGA
CATGACCAAAACTGAAATTGGATTTTTCAAGATCCCAACTAACCCTAAAC
AAAATCCACNGAAGAAGGTTCAAATGGGCTTTGGCAGCCCTATGTACcaa
attgtcaatttttgtgTTAATACGTGGGTTGTAAAGAGTGCTTGAAACAC
CTCTGCTGTTTCCTTTTCGAATAGAAATGTCCATGACCGCCTCAGGATAC
TTTAACTTGTCCGAGGGGTGGGTTCCCCATTGCCGTGGCCCGCTTGTGCA
GGCAATATCCTCAGGAACTGTCTTTATCTCACGTAACGAAAAATCTGCTA
GTTCAAATAACAGAGCCATTATATGATTGCAATACGAAGAATTGCCTGCA
GCACAATCACACGTTCCACTGAAAACTTCTCCATTAAGTCTATTTAGAAC
AACttccaaatgtttttttttcttgtatcATGCTCGATCTACATTCAGCT
TTGACAGTAAAAAATAGTGAGGAAGTCTTTGTATACATTTGATCTTTTAT
AACATATCCttcgtttttgaattttaaacctTGATCTCTTGTTTTGATGA
TTGATCGTGCATTTTTGCCACTCTTTTGTCGATGTAATTCGATCTctctt
tttgtaaacaaaggaaGATTAGTTAAATGTTTAGTCCattcaatgttttg
ttctttttcaaCAATAATTTCAATAGATCTTTCAGTGTTTAGAAGAAGTT
CATCCAAAAAGCTCTTGAACAGCACCGCTTTCGTTCGCCACTTTGTATAA
TGTTTACAAAATATCATTGCTGGCCTCGTTTTCATGCCGCGCAAAaacat
ctcgagaagagtgtattaggGACACCTTGTAGtagtattttttatattat
gacaAATTATATTTACAAAATGTACCTAATATACTATTTTGGATATCATC
TGAAAGTATGAAACacagttttttcctttttgttccaaaaatgttttgaa
cTTCAAGGGTCTTCAAGTCCTTTATAGTGTTTAATCAAACTAAATCTGCC
TCAGAATTTAAAGTTGTCGATATAGTAGAGCCATAGAACTTAGCTAATGT
GTCAATCTTTGTCTCTTTTCCAAAGACCTTTTTAACGCGTTTTTCAATCC
CTTGTTTGCATAAAGGACATGTTTTAGTCTCTTTCAGAAAGAGATTAACA
GCACATACTTGATGATAAGAATGTCCACAATTGACAGTAAAACAGTTTGT
AGTCATTGTATTCAACTCGTCTAAGCATAAAGGACATAGTTTGTTGTATG
GTTGAGTTTTATCTTCGATAGGTTTTCCAATGTACATGGTGAATACAGTG
TTCACTGATGGCTTTGGTAGAATTACCAGAAACTTCAAAGGTAGTTGATA
CGTTTTGATGGCATTATCGAAAATGTATTTCTTGGAGTTTGTGACATCTT
CAGATTTTGAAATGACGATCAGGTTTGGTCTTTGCCCGttctttttggat
aaaaatacGCAACGTTGAAATAGCTTCAATCCAACAAGTCCACGAGCCAA
GAAAAATAATACAATGAGAGCCAATAAAAGAACTACCATAGATATATCAT
CCATGCTTAAAATGGTGGTAAAAGATAATATAATCAATAGCAATTAGCAT
TTATACCAAGGTATTTAAAGGGGTAGCATGTAAAAGTATGTAAAATATGA
CCAGCTGCAAACCAATCTCTGATGCGGTTATTATCACAAAGTAGCTCCAA
GCTTCATGGATAACGAATCTTTGATTTTACAAATCAGAGATGCAAGGTAC
ACCGTCTACATTTCAATACAATATGTATGCAAGTTGAATTGAAGCAACTA
GTTCTTCATTGCGAGATTTGTATCAATGATGATTTCGAAGtgacatcaaa
atttaagtttctcAAATATAAAACTTCTTATACTTCTagtgtttgtttga
aaaaaaagtaactAAATTTTAAACCCTTCCTATATTTGCCACATTGTAAA
CAAAGttatagataaaaaattaaattgtcaaacatttttttgtcaCGATA
TCACATCTCGAAAATCAAATTTCGTGacaaatttttagtttattcTTTCT
GTACTGACAGCCTCATAATTGTCATTTTTGACAGATTTGTTtattaagtc
attaaaaatcgtgaaagtttgtCTCTTTTCTCTTTGGTGTCAATCCAAAT
CAGTTCGAAAGGGTGATAAGAGTAGGTTATTATAATCATAGTTTGTTATA
TGattgttttataaaaacaaaatgacaaagagtttttgtggccaaa Coding sequence (CDS) from alignment at scaffold_286:877927..881422 >TCONS_00057307 ID=TCONS_00057307|Name=TCONS_00057307|organism=Clytia hemisphaerica|type=CDS|length=570bp|location=Sequence derived from alignment at scaffold_286:877927..881422 (Clytia hemisphaerica)
TCAAACTAAATCTGCCTCAGAATTTAAAGTTGTCGATATAGTAGAGCCAT
AGAACTTAGCTAATGTGTCAATCTTTGTCTCTTTTCCAAAGACCTTTTTA
ACGCGTTTTTCAATCCCTTGTTTGCATAAAGGACATGTTTTAGTCTCTTT
CAGAAAGAGATTAACAGCACATACTTGATGATAAGAATGTCCACAATTGA
CAGTAAAACAGTTTGTAGTCATTGTATTCAACTCGTCTAAGCATAAAGGA
CATAGTTTGTTGTATGGTTGAGTTTTATCTTCGATAGGTTTTCCAATGTA
CATGGTGAATACAGTGTTCACTGATGGCTTTGGTAGAATTACCAGAAACT
TCAAAGGTAGTTGATACGTTTTGATGGCATTATCGAAAATGTATTTCTTG
GAGTTTGTGACATCTTCAGATTTTGAAATGACGATCAGGTTTGGTCTTTG
CCCGttctttttggataaaaatacGCAACGTTGAAATAGCTTCAATCCAA
CAAGTCCACGAGCCAAGAAAAATAATACAATGAGAGCCAATAAAAGAACT
ACCATAGATATATCATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057307-exon-scaffold_286-1491911889:877927..881422 | TCONS_00057307-exon-scaffold_286-1491911889:877927..881422 | Clytia hemisphaerica | exon |
| TCONS_00057307-exon-scaffold_286-1510915933:877927..881422 | TCONS_00057307-exon-scaffold_286-1510915933:877927..881422 | Clytia hemisphaerica | exon |
| TCONS_00057307-exon-scaffold_286-1575043694:877927..881422 | TCONS_00057307-exon-scaffold_286-1575043694:877927..881422 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_286 | supercontig | scaffold_286:877927..881422 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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