TCONS_00057307 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057307
Unique NameTCONS_00057307
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3496

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057307 ID=TCONS_00057307|Name=TCONS_00057307|organism=Clytia hemisphaerica|type=transcript|length=3496bp
tttggccacaaaaactctttgtcattttgtttttataaaacaatCATATA
ACAAACTATGATTATAATAACCTACTCTTATCACCCTTTCGAACTGATTT
GGATTGACACCAAAGAGAAAAGAGacaaactttcacgatttttaatgact
taataAACAAATCTGTCAAAAATGACAATTATGAGGCTGTCAGTACAGAA
AgaataaactaaaaatttgtCACGAAATTTGATTTTCGAGATGTGATATC
GtgacaaaaaaatgtttgacaatttaattttttatctataaCTTTGTTTA
CAATGTGGCAAATATAGGAAGGGTTTAAAATTTagttacttttttttcaa
acaaacactAGAAGTATAAGAAGTTTTATATTTgagaaacttaaattttg
atgtcaCTTCGAAATCATCATTGATACAAATCTCGCAATGAAGAACTAGT
TGCTTCAATTCAACTTGCATACATATTGTATTGAAATGTAGACGGTGTAC
CTTGCATCTCTGATTTGTAAAATCAAAGATTCGTTATCCATGAAGCTTGG
AGCTACTTTGTGATAATAACCGCATCAGAGATTGGTTTGCAGCTGGTCAT
ATTTTACATACTTTTACATGCTACCCCTTTAAATACCTTGGTATAAATGC
TAATTGCTATTGATTATATTATCTTTTACCACCATTTTAAGCATGGATGA
TATATCTATGGTAGTTCTTTTATTGGCTCTCATTGTATTATTTTTCTTGG
CTCGTGGACTTGTTGGATTGAAGCTATTTCAACGTTGCgtatttttatcc
aaaaagaaCGGGCAAAGACCAAACCTGATCGTCATTTCAAAATCTGAAGA
TGTCACAAACTCCAAGAAATACATTTTCGATAATGCCATCAAAACGTATC
AACTACCTTTGAAGTTTCTGGTAATTCTACCAAAGCCATCAGTGAACACT
GTATTCACCATGTACATTGGAAAACCTATCGAAGATAAAACTCAACCATA
CAACAAACTATGTCCTTTATGCTTAGACGAGTTGAATACAATGACTACAA
ACTGTTTTACTGTCAATTGTGGACATTCTTATCATCAAGTATGTGCTGTT
AATCTCTTTCTGAAAGAGACTAAAACATGTCCTTTATGCAAACAAGGGAT
TGAAAAACGCGTTAAAAAGGTCTTTGGAAAAGAGACAAAGATTGACACAT
TAGCTAAGTTCTATGGCTCTACTATATCGACAACTTTAAATTCTGAGGCA
GATTTAGTTTGATTAAACACTATAAAGGACTTGAAGACCCTTGAAgttca
aaacatttttggaacaaaaaggaaaaaactgtGTTTCATACTTTCAGATG
ATATCCAAAATAGTATATTAGGTACATTTTGTAAATATAATTtgtcataa
tataaaaaatactaCTACAAGGTGTCcctaatacactcttctcgagatgt
tTTTGCGCGGCATGAAAACGAGGCCAGCAATGATATTTTGTAAACATTAT
ACAAAGTGGCGAACGAAAGCGGTGCTGTTCAAGAGCTTTTTGGATGAACT
TCTTCTAAACACTGAAAGATCTATTGAAATTATTGttgaaaaagaacaaa
acattgaatGGACTAAACATTTAACTAATCttcctttgtttacaaaaaga
gAGATCGAATTACATCGACAAAAGAGTGGCAAAAATGCACGATCAATCAT
CAAAACAAGAGATCAaggtttaaaattcaaaaacgaaGGATATGTTATAA
AAGATCAAATGTATACAAAGACTTCCTCACTATTTTTTACTGTCAAAGCT
GAATGTAGATCGAGCATgatacaagaaaaaaaaacatttggaaGTTGTTC
TAAATAGACTTAATGGAGAAGTTTTCAGTGGAACGTGTGATTGTGCTGCA
GGCAATTCTTCGTATTGCAATCATATAATGGCTCTGTTATTTGAACTAGC
AGATTTTTCGTTACGTGAGATAAAGACAGTTCCTGAGGATATTGCCTGCA
CAAGCGGGCCACGGCAATGGGGAACCCACCCCTCGGACAAGTTAAAGTAT
CCTGAGGCGGTCATGGACATTTCTATTCGAAAAGGAAACAGCAGAGGTGT
TTCAAGCACTCTTTACAACCCACGTATTAAcacaaaaattgacaatttgG
TACATAGGGCTGCCAAAGCCCATTTGAACCTTCTTCNGTGGATTTTGTTT
AGGGTTAGTTGGGATCTTGAAAAATCCAATTTCAGTTTTGGTCATGTCAA
TGTTATAAAAACTGCTCTTGCATTCGGGTATACAACAATATGCACCTTTT
CctcctttcaaaacttttccaggTCGCGCAGCAGACGATCAAGCATACTC
CTCAGAAGCCATTTTTAACTAAAGACACATAAAATTTTGTTTCTATTCAC
TGAAAATCTTTACTCATTTTGGTTTTTTCTTCTATAAACAAacactaaat
tttttttatattctaaTCCCTCATACCATCCATTCCATAAAAAACTTCAC
AGAAAGATCAATTTTCTCACAAAAGAAAGCatattattttcattcaaatt
tcttgTGTAAACatataaagaataaataataagaaaaattcaaaggaatg
agaaaagaaaagagaaaagaagaCATATTTTGTAAACTGTTATGGGAATT
TataagaggcccccccagcggttggcgtgatggagggtttttcgtggNAT
GGGAATTTATAAGATTTCCCgctagaaaaaaagtttgttttgatttttat
cattTCTGGCCTCGTTTTCATGCCGAGCGAAaacatctcgagaagagtgt
attaaagtatcgagtcgaaacacaactatgagtagaaagttttatgtgcg
tgttcacaaaattgtatcttaagctctccctcttttttctttgtcattac
gattaatttatacgttgtaactacctttagtaataagcctgtgtgatgga
gaacgttcttatattttagcgataacacacacaaacttttctactcaatc
gcatgttcaaactcgatactttaattagggacaccctgtatatcaATACA
AAATCCTTAGCGAAGGTGCAATTGAAAAACTATAGGGGATGTGGTTCCAG
GGTTGAGACTTTTCGCGGCAATGATTTCTTGTTCTGCAGTTTTTCCCGAA
ATCCTGATCTACCGACTTTATGGATTGAAATTATACAGATTAAGTGGTGT
TTCGGTGCAGTGGAGCTTTTTAATTAAGTCTGGGTTGAAATTCTCcatca
aaattaaatcaataCATAAAATCGACGGAATGAGGTCCTCGGAAGCAACT
AAGTTTGACAAGACTCGACCGGGtttgtgatacaggggtgtatatgaaaa
aaattcagtaataggggggggtttgtactttttcggtgtgacgggattgg
cccttttatagtacggtattacgggatttgacgaaaaaagagacgggaaa
acggtattttaaaatcagacggtgacggtatttaggtacatttttg
Run BLAST on NCBI

protein sequence of TCONS_00057307-protein

>TCONS_00057307-protein ID=TCONS_00057307-protein|Name=TCONS_00057307-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
MDDISMVVLLLALIVLFFLARGLVGLKLFQRCVFLSKKNGQRPNLIVISK
SEDVTNSKKYIFDNAIKTYQLPLKFLVILPKPSVNTVFTMYIGKPIEDKT
QPYNKLCPLCLDELNTMTTNCFTVNCGHSYHQVCAVNLFLKETKTCPLCK
QGIEKRVKKVFGKETKIDTLAKFYGSTISTTLNSEADLV
Run BLAST on NCBI

transcript from alignment at scaffold_286:877927..881422

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057307 ID=TCONS_00057307|Name=TCONS_00057307|organism=Clytia hemisphaerica|type=transcript|length=3496bp|location=Sequence derived from alignment at scaffold_286:877927..881422 (Clytia hemisphaerica)
caaaaatgtacctaaataccgtcaccgtctgattttaaaataccgttttc ccgtctcttttttcgtcaaatcccgtaataccgtactataaaagggccaa tcccgtcacaccgaaaaagtacaaacccccccctattactgaattttttt catatacacccctgtatcacaaaCCCGGTCGAGTCTTGTCAAACTTAGTT GCTTCCGAGGACCTCATTCCGTCGATTTTATGtattgatttaattttgat gGAGAATTTCAACCCAGACTTAATTAAAAAGCTCCACTGCACCGAAACAC CACTTAATCTGTATAATTTCAATCCATAAAGTCGGTAGATCAGGATTTCG GGAAAAACTGCAGAACAAGAAATCATTGCCGCGAAAAGTCTCAACCCTGG AACCACATCCCCTATAGTTTTTCAATTGCACCTTCGCTAAGGATTTTGTA Ttgatatacagggtgtccctaattaaagtatcgagtttgaacatgcgatt gagtagaaaagtttgtgtgtgttatcgctaaaatataagaacgttctcca tcacacaggcttattactaaaggtagttacaacgtataaattaatcgtaa tgacaaagaaaaaagagggagagcttaagatacaattttgtgaacacgca cataaaactttctactcatagttgtgtttcgactcgatactttaatacac tcttctcgagatgttTTCGCTCGGCATGAAAACGAGGCCAGAaatgataa aaatcaaaacaaactttttttctagcGGGAAATCTTATAAATTCCCATNc cacgaaaaaccctccatcacgccaaccgctgggggggcctcttatAAATT CCCATAACAGTTTACAAAATATGtcttcttttctcttttcttttctcatt cctttgaatttttcttattatttattctttatatGTTTACAcaagaaatt tgaatgaaaataatatGCTTTCTTTTGTGAGAAAATTGATCTTTCTGTGA AGTTTTTTATGGAATGGATGGTATGAGGGAttagaatataaaaaaaattt agtgtTTGTTTATAGAAGAAAAAACCAAAATGAGTAAAGATTTTCAGTGA ATAGAAACAAAATTTTATGTGTCTTTAGTTAAAAATGGCTTCTGAGGAGT ATGCTTGATCGTCTGCTGCGCGAcctggaaaagttttgaaaggagGAAAA GGTGCATATTGTTGTATACCCGAATGCAAGAGCAGTTTTTATAACATTGA CATGACCAAAACTGAAATTGGATTTTTCAAGATCCCAACTAACCCTAAAC AAAATCCACNGAAGAAGGTTCAAATGGGCTTTGGCAGCCCTATGTACcaa attgtcaatttttgtgTTAATACGTGGGTTGTAAAGAGTGCTTGAAACAC CTCTGCTGTTTCCTTTTCGAATAGAAATGTCCATGACCGCCTCAGGATAC TTTAACTTGTCCGAGGGGTGGGTTCCCCATTGCCGTGGCCCGCTTGTGCA GGCAATATCCTCAGGAACTGTCTTTATCTCACGTAACGAAAAATCTGCTA GTTCAAATAACAGAGCCATTATATGATTGCAATACGAAGAATTGCCTGCA GCACAATCACACGTTCCACTGAAAACTTCTCCATTAAGTCTATTTAGAAC AACttccaaatgtttttttttcttgtatcATGCTCGATCTACATTCAGCT TTGACAGTAAAAAATAGTGAGGAAGTCTTTGTATACATTTGATCTTTTAT AACATATCCttcgtttttgaattttaaacctTGATCTCTTGTTTTGATGA TTGATCGTGCATTTTTGCCACTCTTTTGTCGATGTAATTCGATCTctctt tttgtaaacaaaggaaGATTAGTTAAATGTTTAGTCCattcaatgttttg ttctttttcaaCAATAATTTCAATAGATCTTTCAGTGTTTAGAAGAAGTT CATCCAAAAAGCTCTTGAACAGCACCGCTTTCGTTCGCCACTTTGTATAA TGTTTACAAAATATCATTGCTGGCCTCGTTTTCATGCCGCGCAAAaacat ctcgagaagagtgtattaggGACACCTTGTAGtagtattttttatattat gacaAATTATATTTACAAAATGTACCTAATATACTATTTTGGATATCATC TGAAAGTATGAAACacagttttttcctttttgttccaaaaatgttttgaa cTTCAAGGGTCTTCAAGTCCTTTATAGTGTTTAATCAAACTAAATCTGCC TCAGAATTTAAAGTTGTCGATATAGTAGAGCCATAGAACTTAGCTAATGT GTCAATCTTTGTCTCTTTTCCAAAGACCTTTTTAACGCGTTTTTCAATCC CTTGTTTGCATAAAGGACATGTTTTAGTCTCTTTCAGAAAGAGATTAACA GCACATACTTGATGATAAGAATGTCCACAATTGACAGTAAAACAGTTTGT AGTCATTGTATTCAACTCGTCTAAGCATAAAGGACATAGTTTGTTGTATG GTTGAGTTTTATCTTCGATAGGTTTTCCAATGTACATGGTGAATACAGTG TTCACTGATGGCTTTGGTAGAATTACCAGAAACTTCAAAGGTAGTTGATA CGTTTTGATGGCATTATCGAAAATGTATTTCTTGGAGTTTGTGACATCTT CAGATTTTGAAATGACGATCAGGTTTGGTCTTTGCCCGttctttttggat aaaaatacGCAACGTTGAAATAGCTTCAATCCAACAAGTCCACGAGCCAA GAAAAATAATACAATGAGAGCCAATAAAAGAACTACCATAGATATATCAT CCATGCTTAAAATGGTGGTAAAAGATAATATAATCAATAGCAATTAGCAT TTATACCAAGGTATTTAAAGGGGTAGCATGTAAAAGTATGTAAAATATGA CCAGCTGCAAACCAATCTCTGATGCGGTTATTATCACAAAGTAGCTCCAA GCTTCATGGATAACGAATCTTTGATTTTACAAATCAGAGATGCAAGGTAC ACCGTCTACATTTCAATACAATATGTATGCAAGTTGAATTGAAGCAACTA GTTCTTCATTGCGAGATTTGTATCAATGATGATTTCGAAGtgacatcaaa atttaagtttctcAAATATAAAACTTCTTATACTTCTagtgtttgtttga aaaaaaagtaactAAATTTTAAACCCTTCCTATATTTGCCACATTGTAAA CAAAGttatagataaaaaattaaattgtcaaacatttttttgtcaCGATA TCACATCTCGAAAATCAAATTTCGTGacaaatttttagtttattcTTTCT GTACTGACAGCCTCATAATTGTCATTTTTGACAGATTTGTTtattaagtc attaaaaatcgtgaaagtttgtCTCTTTTCTCTTTGGTGTCAATCCAAAT CAGTTCGAAAGGGTGATAAGAGTAGGTTATTATAATCATAGTTTGTTATA TGattgttttataaaaacaaaatgacaaagagtttttgtggccaaa

Coding sequence (CDS) from alignment at scaffold_286:877927..881422

>TCONS_00057307 ID=TCONS_00057307|Name=TCONS_00057307|organism=Clytia hemisphaerica|type=CDS|length=570bp|location=Sequence derived from alignment at scaffold_286:877927..881422 (Clytia hemisphaerica)
TCAAACTAAATCTGCCTCAGAATTTAAAGTTGTCGATATAGTAGAGCCAT
AGAACTTAGCTAATGTGTCAATCTTTGTCTCTTTTCCAAAGACCTTTTTA
ACGCGTTTTTCAATCCCTTGTTTGCATAAAGGACATGTTTTAGTCTCTTT
CAGAAAGAGATTAACAGCACATACTTGATGATAAGAATGTCCACAATTGA
CAGTAAAACAGTTTGTAGTCATTGTATTCAACTCGTCTAAGCATAAAGGA
CATAGTTTGTTGTATGGTTGAGTTTTATCTTCGATAGGTTTTCCAATGTA
CATGGTGAATACAGTGTTCACTGATGGCTTTGGTAGAATTACCAGAAACT
TCAAAGGTAGTTGATACGTTTTGATGGCATTATCGAAAATGTATTTCTTG
GAGTTTGTGACATCTTCAGATTTTGAAATGACGATCAGGTTTGGTCTTTG
CCCGttctttttggataaaaatacGCAACGTTGAAATAGCTTCAATCCAA
CAAGTCCACGAGCCAAGAAAAATAATACAATGAGAGCCAATAAAAGAACT
ACCATAGATATATCATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036112XLOC_036112Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057307-proteinTCONS_00057307-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057307-exon-scaffold_286-1491911889:877927..881422TCONS_00057307-exon-scaffold_286-1491911889:877927..881422Clytia hemisphaericaexon
TCONS_00057307-exon-scaffold_286-1510915933:877927..881422TCONS_00057307-exon-scaffold_286-1510915933:877927..881422Clytia hemisphaericaexon
TCONS_00057307-exon-scaffold_286-1575043694:877927..881422TCONS_00057307-exon-scaffold_286-1575043694:877927..881422Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_286supercontigscaffold_286:877927..881422 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.36018 7.15221 4.57178 3.56315 32.3263 21.0701 14.7883 14.1541 7.238 4.54566 3.76463 5.39399 1.94413 1.92066 1.35281 1.15511 3.48619 3.08762 2.2251 1.60286 1.24281 1.25773 5.83094 5.64788 1.21495 1.67473 2.82532 1.30356 3.34598 3.3101
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057307 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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