TCONS_00057294 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057294
Unique NameTCONS_00057294
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length224

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057294 ID=TCONS_00057294|Name=TCONS_00057294|organism=Clytia hemisphaerica|type=transcript|length=224bp
TTTTGACGTATAAATGTCCATGTCTAAGGCATCCTGTATTTTGTGCCAAA
TTTATGGTTTGAATGCTCATTGGTTTCAAACTGAATCGAGCTTGTTTTTT
CATAGATTATGACCCTTTATATTTTCTGTTAATCTATATAAAGTCTggct
caatataatttgcagcggagacaaaaaaggctaaaacttttgatagaatt
cgattTAGATAgcagttttgtgct
Run BLAST on NCBI

transcript from alignment at scaffold_286:390848..391071

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057294 ID=TCONS_00057294|Name=TCONS_00057294|organism=Clytia hemisphaerica|type=transcript|length=224bp|location=Sequence derived from alignment at scaffold_286:390848..391071 (Clytia hemisphaerica)
agcacaaaactgcTATCTAaatcgaattctatcaaaagttttagcctttt
ttgtctccgctgcaaattatattgagccAGACTTTATATAGATTAACAGA
AAATATAAAGGGTCATAATCTATGAAAAAACAAGCTCGATTCAGTTTGAA
ACCAATGAGCATTCAAACCATAAATTTGGCACAAAATACAGGATGCCTTA
GACATGGACATTTATACGTCAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036099XLOC_036099Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057294-exon-scaffold_286-1491911889:390848..391071TCONS_00057294-exon-scaffold_286-1491911889:390848..391071Clytia hemisphaericaexon
TCONS_00057294-exon-scaffold_286-1510915933:390848..391071TCONS_00057294-exon-scaffold_286-1510915933:390848..391071Clytia hemisphaericaexon
TCONS_00057294-exon-scaffold_286-1575043694:390848..391071TCONS_00057294-exon-scaffold_286-1575043694:390848..391071Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_286supercontigscaffold_286:390848..391071 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.32388	1.13307	1.31561	7.7227	10.9686	2.47643	11.9508	0	2.93743	2.42565	0	6.19076	1.54554	0	3.29894	3.54026	1.74453	1.78808	3.7055	9.04759	3.37029	4.93172	5.32903	2.42243	0	0	6.373	1.70036	2.57932	1.31396
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057294 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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