TCONS_00057286 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057286
Unique NameTCONS_00057286
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length285

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057286 ID=TCONS_00057286|Name=TCONS_00057286|organism=Clytia hemisphaerica|type=transcript|length=285bp
NCCATACAGTGTTGGCATATTCCACCGTTGGTCTGATAAAAGTTTTATAA
CACTTCAGACGTGTTTCTTTGTCTGCCATTGATAGGTTCCTCTGAAAGAA
TATTTGGGTGTTATTTGCTTTGGAAGTGGCAAGATCGATGTGATTCTTCC
AAGAGAGATTATTTGAGATTACGACACCGAGGTATTTAGCTTTGTTAACA
GTTTTGAGCTGTTGACCATGGATTTCATAGGTTTTATCATGAATTTTTCG
TTTGTTGGTGACTCTGAGGTTAAAGCATTTGTCTN
Run BLAST on NCBI

transcript from alignment at scaffold_286:238624..238908

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057286 ID=TCONS_00057286|Name=TCONS_00057286|organism=Clytia hemisphaerica|type=transcript|length=285bp|location=Sequence derived from alignment at scaffold_286:238624..238908 (Clytia hemisphaerica)
NAGACAAATGCTTTAACCTCAGAGTCACCAACAAACGAAAAATTCATGAT
AAAACCTATGAAATCCATGGTCAACAGCTCAAAACTGTTAACAAAGCTAA
ATACCTCGGTGTCGTAATCTCAAATAATCTCTCTTGGAAGAATCACATCG
ATCTTGCCACTTCCAAAGCAAATAACACCCAAATATTCTTTCAGAGGAAC
CTATCAATGGCAGACAAAGAAACACGTCTGAAGTGTTATAAAACTTTTAT
CAGACCAACGGTGGAATATGCCAACACTGTATGGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036091XLOC_036091Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057286-exon-scaffold_286-1491911889:238624..238908TCONS_00057286-exon-scaffold_286-1491911889:238624..238908Clytia hemisphaericaexon
TCONS_00057286-exon-scaffold_286-1510915933:238624..238908TCONS_00057286-exon-scaffold_286-1510915933:238624..238908Clytia hemisphaericaexon
TCONS_00057286-exon-scaffold_286-1575043694:238624..238908TCONS_00057286-exon-scaffold_286-1575043694:238624..238908Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_286supercontigscaffold_286:238624..238908 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.59319	0.127115	9.94718	6.56751	6.97429	0.965992	5.95026	3.77644	1.90884	3.65387	10.2957	2.14392	3.16117	3.43441	2.93132	0.622169	0.579831	2.10297	1.56864	1.554	7.23723	3.87125	0	1.72116	2.46429	4.41189	4.74389	2.25362	2.74571	0.746957
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057286 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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