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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057282 ID=TCONS_00057282|Name=TCONS_00057282|organism=Clytia hemisphaerica|type=transcript|length=1573bp
aaaaacaatattaGAAATGGTGTTTTATTTTGAGTCCAAACTGATTGATC
CGCCTGTTTTGTTGTACATGGGACGTGATAAACACGAGAATGAAGAACTC
ATCAGATGGGGTTGGCCAGAAGACATTTGGTTCCATGTTGATCAAATGTC
ATCAGCCCACGTCTATTTACGGTTACCTCCTGGTATGACCATCGATACTA
TCCCACAAGAAGTCATCTTAGATTGCGCTCATCTAACCAAGGCTAATAGT
ATACAAGGGTGTAAATCAAACAATGTAAATATTGTTTACACACTTTGgga
gaatttaaaaaagactGGGGATATGGATGTGGGTCAAGTTGGATTTCATA
AAAATAAGGAAGTCCGAAACATAatgattgaaaagaaaataaatgaaatc
aCTAATCGattaaacaaaacaaagagaGAAGAAGAGCCTAATTTCCGTGC
TTTACGTGAAGAGAGAGATGCAATTGAACGCAGAAAAGATAAGAAGAAAT
TACAAGAACAAAAggttgagcagaaaaaacaagaacaatttaagagaGAA
CaggaagatttgaaaaattacaCGTCACTTATGACTGAAGATAATATGAG
TTCTAATATTGATAATCCAATTGATGAAGATGACTTCATGTAAAATCAAC
AATTTTGNAATATGAGTTCTAATATTGATAATCCAATTGATGAAGATGAC
TTCAtgtaaaataaacaattttgtaaaagaaaaataatggaaattaGAAG
TTTTACATCCAATATAGGAATATGGTATTTCCTAATCTTGTAATTATGAC
CATAATACTATAATCCATAATCCTAATATGTAAATCCCACActaaattct
tattttatttCTAAATGTCTGGTATTGATGAGAACGGTTTTAAAATCTTG
TTAatgtttcaaatttgaaaaaaaatgagttCTTTAAATTTTCTGTAGAA
ATGGGCATAATAAAACTCTTGAGTTGTAATTTTGAACAGTTTCAAAAATT
CAGTACTGGGTGTGTGACATTTTTGAAGGCTCACACAAAACTGTCTCATA
GTAACAGAGCACATTGTGCATAATGTCTATATTTTTGATATGATTAAGTT
AAGCTAGATATATCCCCTAAATAATGCATTATTCTTTACCTAAATTGACT
TACTCTATCTCAAGTTATACCCAGAAGTAAAATGTGACAAAAAATGACTT
ACTTTAAGGATGACATATTTCAGTTTCTTTACCCATAAAGTAAGTCATTT
ATTGGCATAATCAACACCAAAAGTTGTTCGTATTTAACTACTGGATGATA
TAGGAGGTATGACAACATGGATTTatgtttaaattattttcaacagTTGA
TTGTGACAGAGAGTGACATACTTTGAACATAACAGGGTAATTCATTTAGT
AAGTCATTTATTGTCACAAAGAATGACTTCATAAATATATTTTAGAAAAG
GTGATAAAATTTCCTATtacctgtcaaaatttcaaggcttGTAATTAATT
TGAGTAGATTTTATTcaactttaaagatttttgtccattttttgtgTTCT
AAAAaatgtcacacaatttttga Run BLAST on NCBI protein sequence of TCONS_00057282-protein >TCONS_00057282-protein ID=TCONS_00057282-protein|Name=TCONS_00057282-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
KTILEMVFYFESKLIDPPVLLYMGRDKHENEELIRWGWPEDIWFHVDQMS
SAHVYLRLPPGMTIDTIPQEVILDCAHLTKANSIQGCKSNNVNIVYTLWE
NLKKTGDMDVGQVGFHKNKEVRNIMIEKKINEITNRLNKTKREEEPNFRA
LREERDAIERRKDKKKLQEQKVEQKKQEQFKREQEDLKNYTSLMTEDNMS
SNIDNPIDEDDFM Run BLAST on NCBI transcript from alignment at scaffold_286:229070..230642 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057282 ID=TCONS_00057282|Name=TCONS_00057282|organism=Clytia hemisphaerica|type=transcript|length=1573bp|location=Sequence derived from alignment at scaffold_286:229070..230642 (Clytia hemisphaerica)
tcaaaaattgtgtgacattTTTTAGAAcacaaaaaatggacaaaaatctt
taaagttgAATAAAATCTACTCAAATTAATTACaagccttgaaattttga
caggtaATAGGAAATTTTATCACCTTTTCTAAAATATATTTATGAAGTCA
TTCTTTGTGACAATAAATGACTTACTAAATGAATTACCCTGTTATGTTCA
AAGTATGTCACTCTCTGTCACAATCAActgttgaaaataatttaaacatA
AATCCATGTTGTCATACCTCCTATATCATCCAGTAGTTAAATACGAACAA
CTTTTGGTGTTGATTATGCCAATAAATGACTTACTTTATGGGTAAAGAAA
CTGAAATATGTCATCCTTAAAGTAAGTCATTTTTTGTCACATTTTACTTC
TGGGTATAACTTGAGATAGAGTAAGTCAATTTAGGTAAAGAATAATGCAT
TATTTAGGGGATATATCTAGCTTAACTTAATCATATCAAAAATATAGACA
TTATGCACAATGTGCTCTGTTACTATGAGACAGTTTTGTGTGAGCCTTCA
AAAATGTCACACACCCAGTACTGAATTTTTGAAACTGTTCAAAATTACAA
CTCAAGAGTTTTATTATGCCCATTTCTACAGAAAATTTAAAGaactcatt
ttttttcaaatttgaaacatTAACAAGATTTTAAAACCGTTCTCATCAAT
ACCAGACATTTAGaaataaaataagaatttagTGTGGGATTTACATATTA
GGATTATGGATTATAGTATTATGGTCATAATTACAAGATTAGGAAATACC
ATATTCCTATATTGGATGTAAAACTTCtaatttccattatttttctttta
caaaattgtttattttacaTGAAGTCATCTTCATCAATTGGATTATCAAT
ATTAGAACTCATATTNCAAAATTGTTGATTTTACATGAAGTCATCTTCAT
CAATTGGATTATCAATATTAGAACTCATATTATCTTCAGTCATAAGTGAC
GtgtaatttttcaaatcttcctGTTCtctcttaaattgttcttgtttttt
ctgctcaaccTTTTGTTCTTGTAATTTCTTCTTATCTTTTCTGCGTTCAA
TTGCATCTCTCTCTTCACGTAAAGCACGGAAATTAGGCTCTTCTTCtctc
tttgttttgtttaatCGATTAGtgatttcatttattttcttttcaatcat
TATGTTTCGGACTTCCTTATTTTTATGAAATCCAACTTGACCCACATCCA
TATCCCCagtcttttttaaattctccCAAAGTGTGTAAACAATATTTACA
TTGTTTGATTTACACCCTTGTATACTATTAGCCTTGGTTAGATGAGCGCA
ATCTAAGATGACTTCTTGTGGGATAGTATCGATGGTCATACCAGGAGGTA
ACCGTAAATAGACGTGGGCTGATGACATTTGATCAACATGGAACCAAATG
TCTTCTGGCCAACCCCATCTGATGAGTTCTTCATTCTCGTGTTTATCACG
TCCCATGTACAACAAAACAGGCGGATCAATCAGTTTGGACTCAAAATAAA
ACACCATTTCtaatattgttttt Coding sequence (CDS) from alignment at scaffold_286:229070..230642 >TCONS_00057282 ID=TCONS_00057282|Name=TCONS_00057282|organism=Clytia hemisphaerica|type=CDS|length=642bp|location=Sequence derived from alignment at scaffold_286:229070..230642 (Clytia hemisphaerica)
TTACATGAAGTCATCTTCATCAATTGGATTATCAATATTAGAACTCATAT
TATCTTCAGTCATAAGTGACGtgtaatttttcaaatcttcctGTTCtctc
ttaaattgttcttgttttttctgctcaaccTTTTGTTCTTGTAATTTCTT
CTTATCTTTTCTGCGTTCAATTGCATCTCTCTCTTCACGTAAAGCACGGA
AATTAGGCTCTTCTTCtctctttgttttgtttaatCGATTAGtgatttca
tttattttcttttcaatcatTATGTTTCGGACTTCCTTATTTTTATGAAA
TCCAACTTGACCCACATCCATATCCCCagtcttttttaaattctccCAAA
GTGTGTAAACAATATTTACATTGTTTGATTTACACCCTTGTATACTATTA
GCCTTGGTTAGATGAGCGCAATCTAAGATGACTTCTTGTGGGATAGTATC
GATGGTCATACCAGGAGGTAACCGTAAATAGACGTGGGCTGATGACATTT
GATCAACATGGAACCAAATGTCTTCTGGCCAACCCCATCTGATGAGTTCT
TCATTCTCGTGTTTATCACGTCCCATGTACAACAAAACAGGCGGATCAAT
CAGTTTGGACTCAAAATAAAACACCATTTCtaatattgtttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057282-exon-scaffold_286-1491911889:229070..230642 | TCONS_00057282-exon-scaffold_286-1491911889:229070..230642 | Clytia hemisphaerica | exon |
| TCONS_00057282-exon-scaffold_286-1510915933:229070..230642 | TCONS_00057282-exon-scaffold_286-1510915933:229070..230642 | Clytia hemisphaerica | exon |
| TCONS_00057282-exon-scaffold_286-1575043694:229070..230642 | TCONS_00057282-exon-scaffold_286-1575043694:229070..230642 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_286 | supercontig | scaffold_286:229070..230642 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008532 | DUF814 |
Blast
BLAST of TCONS_00057282 vs. Swiss-Prot (Human)
Match: CCD25 (Coiled-coil domain-containing protein 25 OS=Homo sapiens GN=CCDC25 PE=1 SV=2) HSP 1 Score: 226.868 bits (577), Expect = 2.877e-70 Identity = 123/209 (58.85%), Postives = 160/209 (76.56%), Query Frame = 2
Query: 17 MVFYFESKLIDPPVL-LYMGRDKHENEELIRWGWPEDIWFHVDQMSSAHVYLRLPPGMTIDTIPQEVILDCAHLTKANSIQGCKSNNVNIVYTLWENLKKTGDMDVGQVGFHKNKEVRNIMIEKKINEITNRLNKTKREEEPNFRALREERDAIXXXXXXXXXXXXXXXXXXXXXXXXXXXDLKNYTSLMTEDNMSSNIDNPIDEDDFM 640
MVFYF S ++ +YMG+DK+ENE+LI+ GWPEDIWFHVD++SSAHVYLRL G I+ IP+EV++DCAHL KANSIQGCK NNVN+VYT W NLKKT DMDVGQ+GFH+ K+V+ + +EKK+NEI NRL KTK E P+ A +E RD ER + K ++QE K +K++ + KRE ++L++Y+SLM +NMSSN D D D+FM
Sbjct: 1 MVFYFTSSSVNSSAYTIYMGKDKYENEDLIKHGWPEDIWFHVDKLSSAHVYLRLHKGENIEDIPKEVLMDCAHLVKANSIQGCKMNNVNVVYTPWSNLKKTADMDVGQIGFHRQKDVKIVTVEKKVNEILNRLEKTKVERFPDLAAEKECRDREERNEKKAQIQEMKKREKEEMKKKREMDELRSYSSLMKVENMSSNQDGN-DSDEFM 208
The following BLAST results are available for this feature:
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