TCONS_00057254 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057254
Unique NameTCONS_00057254
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length851

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057254 ID=TCONS_00057254|Name=TCONS_00057254|organism=Clytia hemisphaerica|type=transcript|length=851bp
TTTCAGAAAGTGTTCCAAGCACTTTAGAAGTGAAAAGAATACACCATGTC
GGAGCTATCAGCTTGGGATTATGTTGTGTTCGCTCTAATGCTGGTTGGAT
CAAGTCTCATAGGTCTTTATCATGGTTGGAAAGGTAGTCGAGTCAAGGAG
GATACAACTGACTATCTATTGGCAGGTCGCAACATGGGTTGGCTACCTCT
TTTTGTCTCAATTGTGGGATCCTTCCTGTCTGCTATCTCCTTGCTTGGGA
TTCCCAGTGAGATTTACACGTATGGTGGACAGTTCTTTTTGACCATAGCA
TCATTCTGGGTAGTGATGCCATTATGTATCTTCATCTTTGCACCGTTGTA
TCGAAATATTGGAATTACAAGTGCTAATGAGTACTTGGAATTGCGATTCT
CAAGACCAGTTCGAATATTTGGAGGTGTTCTTTTCATCTTGCAGACAGTT
ATGTACTTATCAGTGGTGATGTATGCTCCGAGTCTTGCACTGGAAGCTGT
GGCTGGCTTACGATTAGAAATATCACTTGTGGTGACAGTCATCATTTGTA
ATATCTACACCACTATTGGCGGTATGAAGGGCGTGATTTGGACCGACGTT
TTTCAAACTTGTATCATCTTGATCGGTTTGATTGTTGTCTTAATCATTGG
AACGACTCAAGTGGGATcatttggtgacgtcatcaagatTGCTAGTGATG
GTGGAAGGACTGACATCTTCAGgTTTGATGCAGACCCGTCAATTCGTAAC
ACATTTTGGGGATTTATCTTCGGGTACACATTCACATTGATGCCTTTCTT
CTGTTGTGGACAAATCTGTGTGCAAAGATATCTATCCGCCAAGTCGAACG
A
Run BLAST on NCBI

protein sequence of TCONS_00057254-protein

>TCONS_00057254-protein ID=TCONS_00057254-protein|Name=TCONS_00057254-protein|organism=Clytia hemisphaerica|type=polypeptide|length=268bp
MSELSAWDYVVFALMLVGSSLIGLYHGWKGSRVKEDTTDYLLAGRNMGWL
PLFVSIVGSFLSAISLLGIPSEIYTYGGQFFLTIASFWVVMPLCIFIFAP
LYRNIGITSANEYLELRFSRPVRIFGGVLFILQTVMYLSVVMYAPSLALE
AVAGLRLEISLVVTVIICNIYTTIGGMKGVIWTDVFQTCIILIGLIVVLI
IGTTQVGSFGDVIKIASDGGRTDIFRFDADPSIRNTFWGFIFGYTFTLMP
FFCCGQICVQRYLSAKSN
Run BLAST on NCBI

transcript from alignment at scaffold_286:445726..450204-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057254 ID=TCONS_00057254|Name=TCONS_00057254|organism=Clytia hemisphaerica|type=transcript|length=4479bp|location=Sequence derived from alignment at scaffold_286:445726..450204- (Clytia hemisphaerica)
TTTCAGAAAGTGTTCCAAGCACTTTAGAAGTGAAAAGAATACACCATGTC
GGAGCTATCAGCTTGGGATTATGTTGTGTTCGCTCTAATGCTGGTTGGAT
CAAGTCTCATAGGTCTTTATCATGGTTGGAAAGGTAGTCGAGTCAAGGAG
GATACAACTGACTATCTATTGGCAGGTCGCAACATGGGTTGGCTACCTCT
TTTTGTCTCAATTGTGGGATCCTTCCTGTCTGCTATCTCCTTGCTTGGGA
TTCCCAGTGAGATTTACACGTATGGTGGACAGTTCTTTTTGACCATAGCA
TCATTCTGGGTAGTGATGCCATTATGTATCTTCATCTTTGCACCGTTGTA
TCGAAATATTGGAATTACAAGTGCTAATGAGGTAAGTATTACACGCTTTT
TTGAGGGCCTAAGTCACCTTTCAAATTACGCAATCACGCAAACGAAATTT
CCAAACTACGTTAACACGAGTTAAATTTCCTTTCTATCACGATCACCTTT
ATCATATTGGTTCCTCCGATCACGCAATCACGCACTTCAAAATCTTAAAT
CACGATATCACGACCTTGAAAAACGCCAATCACGCCTTCAGGAAAACCGC
TGGGGCCTCTTTTTTATAAAAACAATTTATAAGAACACGAGACCGAAAAT
TGGCTGAAACATAAGAACAGATTAAGAACAATTTGAGCCTTAGATTTCAA
AAATTACTATAAAAAGCACAAATTTTAACAAAATTTAAACCCATTTTATG
AACATACCATAAGAACATTTAAGCCTGAAAATTTCTGAGGCTGAGCCAAA
ATTTACTGGTTCTTATAAAACAACGTGTATTTTGTTAGCCGTCAAATGTT
AAGCGTTTGTCAGTGTTCATATGACACTATAAATATGGTTGTTAACAGAT
CATCCATTCCACACACACGAAAGGAATATGGTGAACGTATAGTTTTTCAA
CCTAAAAAATTCAAAACCATCATTCATGTTGTTGTCTGAAAACGAAAGCG
ACGGTTCTAAGGCTTATGTTTTATGATTAGTGCCTGATTTTGGTGCGATA
TTTCTGCTTTAGCCAATCACCGCGCTCAATAACTCATTGGGCTTTTCCAG
AAAAAAACCGTACACCCCCTGTTGAGGAGCCATCATTTTGTGGCTGGAAA
TGCTGCAACCCCCTGAAATTCCAGGCAATTTCAGGCTTAAACCCCTCTGG
AATTCTGAATTTTAGTAGGATTTAAAAGGCTACCCCCATGGAATTTGTAT
CTCCCTATGGAATTCCGCTACATATCAAAACTTATCCCCTTGGAACGGAA
ATGGAGCTCCTCAACAGGGGGTATATGGTTTTTTTCTGGAAAAGCCCATT
TAATATTCATCTCAAATCTTTATTGAAAAAGCGATCAAAGCTGTGAAAAT
CAACGTTGGTAGATATTCTTACGAGCCATGATGATGGCCTTTAAAGTAAA
TACGTGTCATGCGCAGAAAACCGCTTGACTTCCAGAACTATCTAAAATAA
TTTCTTTTTTTCCCATAGTACTTGGAATTGCGATTCTCAAGACCAGTTCG
AATATTTGGAGGTGTTCTTTTCATCTTGCAGACAGTAAGTAAAGATACAC
TTCATTCTCTCTAATTCGATTTTCAAGGGAGGAAAAATTTTATTCGAATT
AGAAAAATATTCGAATTACAGAGAGTAAGTTAAACAATTTTCCAGCTGAG
GGAACCAATGTTTTAGGTCGAATACAGAAAGATTCGAATAATAGAGATTC
GAAAAAAATCATAGAAAAGGTTTTTTAAAGAAGAATATGAAATCTAGGCT
ACGTCATGAATTCGCTTCGTTTCGAGCGTAAAACTTCTACTTTTACTAGT
AAGGTCTAAAACCATAAAGACCTGGAGCTGCCTATTGTGTAGACTAAATA
AAACGCTATCAATGTAAGGCCTACGATTCACAGCATCATAAAACTAGCCG
ATTCAGGGTTTTGTATATCTACAATCCCCCAACAAATATCTTGAGACAGA
AGAATTCTAAACATTTCTGAAAGATAAAAATTCGTCCCCCGGACCCCACT
ATCAGTCCGGAAATGGCTCAGAACTCAACGCTGACAGTGGGAGAAAGGGG
GACTATGGGAAGTGTCTCACATATAAATTCGGGAATTGTAGCAGCTATAT
CTTTTCTGTATACTAACAGGTTATGTACTTATCAGTGGTGATGTATGCTC
CGAGTCTTGCACTGGAAGCTGGTAAACTTTTTTCGATGTCTGAGAATACA
ACCCTAGTAAGAGATTTTTAGCAATGGGATAAAATGAAGGGACTAAAATG
CCTATTACAATGAGGATAAAAAAAAATTAATATGGATATGGGGTATAATA
CTATCATTCGCAGCTCAAAATGTGTTTTTCCTAGTTTGCTATTCAGTGTA
ATTTTTGAATTGGGATCAGATATTAAGGTTAAAGGTTTTGTTTTCAAATA
AGAGTTTTGTTTTCAAATATTGTTTGCTTACTCACCATTTCAATTTACAA
GCTTTTTCACATTGAATCGACACGGATGTGAAGCAAGATTGGTCAGAAAG
AGGAAAAGAAAAACATTTTTTTTCTTTATTCAGCACAATATAACAATAGA
GACATGTGACATGTGTTTGATTATGAAACGGGCACACTTATGTAAAAATG
AAACCTTTAAGGCCGGTGTCCACTTTCGTGCGAAGCGCGCGAAAGATTTT
TTCTTAACNAGAAAAGATTACGTTATAAAAAAGTTTCGCACGAACAAAAA
AAAAGTTGAAGGAAGTTCAACTTTTTTCAGCCGTTACGTCAATTTTGACC
AATGGAATTGCTTCTTTTTTCAATCAACCAATGACGTTACAAATAACGTG
GAAAGTTTCGCGCGCTTCGCGCGAAAGTGGACACCGACCTTTAGTTTCAG
CAAGAACGAATTTTTGGCGAGAGTCCCACCGGGTCTACGTACCCACGAGG
GTANTGCCGCCATTAGGGTACCAATTTTCAAAAAACTCCGATCAAAGATT
TTGCTTGGCTGGGATTGAGAAGCTTGGTCCAGGGTATATAAAGGTCAGTG
GTCCCACCGGGTCTACGTACCCACGAGGGTATAATGATTATCCCTGTCTC
GTAACATATCTAATTTTTGAGGAAAGAAAAAACTCAATCCCTTGGTCTTT
GCTCCATCCTGAAACAGGGTTATCTTACTTCATTTTAGTGGCTGGCTTAC
GATTAGAAATATCACTTGTGGTGACAGTCATCATTTGTAATATCTACACC
ACTATTGTAAGTCATCATGATAACTTATCTAACCTATTCTTAAAAGTCAA
AAAGATGAAGACCCATTTCTAAGATTTATATTCAAATTTGTAAGAAATCT
CTATAAAACTTCCGAGGTACCTAAAATAATCGAAAAAGTTTTGAATTGTT
TTAAGAATTTCCCAATCTATTCTCCCTTTTCTGTGAAGCATGCGAAAATC
GTATCAAGGTAATGCATATCAAAATCCTTTTTAGAGTTTGTAGAGACATG
TGATTCAGAACGAAGTCTAGAAATGAGATATCACATCGTATTTTCCGTTT
CATTTTTCAGGGCGGTATGAAGGGCGTGATTTGGACCGACGTTTTTCAAA
CTTGTATCATCTTGATCGGTTTGATTGTTGTCTTAATCATTGGAACGACT
CAAGTGGGATCATTTGGTGACGTCATCAAGATTGCTAGTGATGGTGGAAG
GACTGACATCTTCAGGTGAAAGACGTTTTCCAGTTGGTACACAACGTTGT
TTTAGCGTACATTTAATGTGATAAATGGCCCTGAGATGGACGTTATTTGG
ATGTTCTCTGCCTGCTCGCAGAGTTCTTTTTTAGGCCAAAACCGGGATAT
AAGTAATTAAAAGGACATCATGCAACATATCGGCCAACCATTTGCTTACA
CAGAACAACCTTCTCCCTTTTCGGCACCGCGCGAGCACAAATTTTGAGAT
TTTTTTGTTGTTTATTCTGCTTTAAATTTTCTGAATTCATTTCTGTTTTG
AGACTATTGTAATAGAAAATCGCTTTTAAAAATATTTTGAGACGATTGTT
ATGGTATTTTCTGGTCTTGCTTTTTCTGATCCACGCATCCCCTTTATGAA
AAATGGTTTCTTGATTTCGCACCCATTGCCACTTGCACCATTTTTTGATT
TCACTGATAAACGTGATAGAATCCTTTCATGAGCGCTCTCAAAACCATAG
AAAAGCAAACAAAGGACTGGGTTCGAGTTTGAAGGTTGTTCCTTATTGAT
CGCTTTTTAAGGAAATCAAATCAATTGCCACTTGAACCTTTCTACACTGT
TCCGGTCACTAAGGCAGAGATTGTTGAAAATTACTTTTCTCTTCTTTTAG
GTTTGATGCAGACCCGTCAATTCGTAACACATTTTGGGGATTTATCTTCG
GGTACACATTCACATTGATGCCTTTCTTCTGTTGTGGACAAATCTGTGTG
CAAAGATATCTATCCGCCAAGTCGAACGA

Coding sequence (CDS) from alignment at scaffold_286:445726..450204-

>TCONS_00057254 ID=TCONS_00057254|Name=TCONS_00057254|organism=Clytia hemisphaerica|type=CDS|length=4824bp|location=Sequence derived from alignment at scaffold_286:445726..450204- (Clytia hemisphaerica)
GTTTGATGCAGACCCGTCAATTCGTAACACATTTTGGGGATTTATCTTCG
GGTACACATTCACATTGATGCCTTTCTTCTGTTGTGGACAAATCTGTGTG
CAAAGATATCTATCCGCCAAGTCGAACGGCGGTATGAAGGGCGTGATTTG
GACCGACGTTTTTCAAACTTGTATCATCTTGATCGGTTTGATTGTTGTCT
TAATCATTGGAACGACTCAAGTGGGATCATTTGGTGACGTCATCAAGATT
GCTAGTGATGGTGGAAGGACTGACATCTTCAGTGGCTGGCTTACGATTAG
AAATATCACTTGTGGTGACAGTCATCATTTGTAATATCTACACCACTATT
GTTATGTACTTATCAGTGGTGATGTATGCTCCGAGTCTTGCACTGGAAGC
TGTACTTGGAATTGCGATTCTCAAGACCAGTTCGAATATTTGGAGGTGTT
CTTTTCATCTTGCAGACAATGTCGGAGCTATCAGCTTGGGATTATGTTGT
GTTCGCTCTAATGCTGGTTGGATCAAGTCTCATAGGTCTTTATCATGGTT
GGAAAGGTAGTCGAGTCAAGGAGGATACAACTGACTATCTATTGGCAGGT
CGCAACATGGGTTGGCTACCTCTTTTTGTCTCAATTGTGGGATCCTTCCT
GTCTGCTATCTCCTTGCTTGGGATTCCCAGTGAGATTTACACGTATGGTG
GACAGTTCTTTTTGACCATAGCATCATTCTGGGTAGTGATGCCATTATGT
ATCTTCATCTTTGCACCGTTGTATCGAAATATTGGAATTACAAGTGCTAA
TGAGGTTTGATGCAGACCCGTCAATTCGTAACACATTTTGGGGATTTATC
TTCGGGTACACATTCACATTGATGCCTTTCTTCTGTTGTGGACAAATCTG
TGTGCAAAGATATCTATCCGCCAAGTCGAACGGCGGTATGAAGGGCGTGA
TTTGGACCGACGTTTTTCAAACTTGTATCATCTTGATCGGTTTGATTGTT
GTCTTAATCATTGGAACGACTCAAGTGGGATCATTTGGTGACGTCATCAA
GATTGCTAGTGATGGTGGAAGGACTGACATCTTCAGTGGCTGGCTTACGA
TTAGAAATATCACTTGTGGTGACAGTCATCATTTGTAATATCTACACCAC
TATTGTTATGTACTTATCAGTGGTGATGTATGCTCCGAGTCTTGCACTGG
AAGCTGTACTTGGAATTGCGATTCTCAAGACCAGTTCGAATATTTGGAGG
TGTTCTTTTCATCTTGCAGACAATGTCGGAGCTATCAGCTTGGGATTATG
TTGTGTTCGCTCTAATGCTGGTTGGATCAAGTCTCATAGGTCTTTATCAT
GGTTGGAAAGGTAGTCGAGTCAAGGAGGATACAACTGACTATCTATTGGC
AGGTCGCAACATGGGTTGGCTACCTCTTTTTGTCTCAATTGTGGGATCCT
TCCTGTCTGCTATCTCCTTGCTTGGGATTCCCAGTGAGATTTACACGTAT
GGTGGACAGTTCTTTTTGACCATAGCATCATTCTGGGTAGTGATGCCATT
ATGTATCTTCATCTTTGCACCGTTGTATCGAAATATTGGAATTACAAGTG
CTAATGAGGTTTGATGCAGACCCGTCAATTCGTAACACATTTTGGGGATT
TATCTTCGGGTACACATTCACATTGATGCCTTTCTTCTGTTGTGGACAAA
TCTGTGTGCAAAGATATCTATCCGCCAAGTCGAACGGCGGTATGAAGGGC
GTGATTTGGACCGACGTTTTTCAAACTTGTATCATCTTGATCGGTTTGAT
TGTTGTCTTAATCATTGGAACGACTCAAGTGGGATCATTTGGTGACGTCA
TCAAGATTGCTAGTGATGGTGGAAGGACTGACATCTTCAGTGGCTGGCTT
ACGATTAGAAATATCACTTGTGGTGACAGTCATCATTTGTAATATCTACA
CCACTATTGTTATGTACTTATCAGTGGTGATGTATGCTCCGAGTCTTGCA
CTGGAAGCTGTACTTGGAATTGCGATTCTCAAGACCAGTTCGAATATTTG
GAGGTGTTCTTTTCATCTTGCAGACAATGTCGGAGCTATCAGCTTGGGAT
TATGTTGTGTTCGCTCTAATGCTGGTTGGATCAAGTCTCATAGGTCTTTA
TCATGGTTGGAAAGGTAGTCGAGTCAAGGAGGATACAACTGACTATCTAT
TGGCAGGTCGCAACATGGGTTGGCTACCTCTTTTTGTCTCAATTGTGGGA
TCCTTCCTGTCTGCTATCTCCTTGCTTGGGATTCCCAGTGAGATTTACAC
GTATGGTGGACAGTTCTTTTTGACCATAGCATCATTCTGGGTAGTGATGC
CATTATGTATCTTCATCTTTGCACCGTTGTATCGAAATATTGGAATTACA
AGTGCTAATGAGGTTTGATGCAGACCCGTCAATTCGTAACACATTTTGGG
GATTTATCTTCGGGTACACATTCACATTGATGCCTTTCTTCTGTTGTGGA
CAAATCTGTGTGCAAAGATATCTATCCGCCAAGTCGAACGGCGGTATGAA
GGGCGTGATTTGGACCGACGTTTTTCAAACTTGTATCATCTTGATCGGTT
TGATTGTTGTCTTAATCATTGGAACGACTCAAGTGGGATCATTTGGTGAC
GTCATCAAGATTGCTAGTGATGGTGGAAGGACTGACATCTTCAGTGGCTG
GCTTACGATTAGAAATATCACTTGTGGTGACAGTCATCATTTGTAATATC
TACACCACTATTGTTATGTACTTATCAGTGGTGATGTATGCTCCGAGTCT
TGCACTGGAAGCTGTACTTGGAATTGCGATTCTCAAGACCAGTTCGAATA
TTTGGAGGTGTTCTTTTCATCTTGCAGACAATGTCGGAGCTATCAGCTTG
GGATTATGTTGTGTTCGCTCTAATGCTGGTTGGATCAAGTCTCATAGGTC
TTTATCATGGTTGGAAAGGTAGTCGAGTCAAGGAGGATACAACTGACTAT
CTATTGGCAGGTCGCAACATGGGTTGGCTACCTCTTTTTGTCTCAATTGT
GGGATCCTTCCTGTCTGCTATCTCCTTGCTTGGGATTCCCAGTGAGATTT
ACACGTATGGTGGACAGTTCTTTTTGACCATAGCATCATTCTGGGTAGTG
ATGCCATTATGTATCTTCATCTTTGCACCGTTGTATCGAAATATTGGAAT
TACAAGTGCTAATGAGGTTTGATGCAGACCCGTCAATTCGTAACACATTT
TGGGGATTTATCTTCGGGTACACATTCACATTGATGCCTTTCTTCTGTTG
TGGACAAATCTGTGTGCAAAGATATCTATCCGCCAAGTCGAACGGCGGTA
TGAAGGGCGTGATTTGGACCGACGTTTTTCAAACTTGTATCATCTTGATC
GGTTTGATTGTTGTCTTAATCATTGGAACGACTCAAGTGGGATCATTTGG
TGACGTCATCAAGATTGCTAGTGATGGTGGAAGGACTGACATCTTCAGTG
GCTGGCTTACGATTAGAAATATCACTTGTGGTGACAGTCATCATTTGTAA
TATCTACACCACTATTGTTATGTACTTATCAGTGGTGATGTATGCTCCGA
GTCTTGCACTGGAAGCTGTACTTGGAATTGCGATTCTCAAGACCAGTTCG
AATATTTGGAGGTGTTCTTTTCATCTTGCAGACAATGTCGGAGCTATCAG
CTTGGGATTATGTTGTGTTCGCTCTAATGCTGGTTGGATCAAGTCTCATA
GGTCTTTATCATGGTTGGAAAGGTAGTCGAGTCAAGGAGGATACAACTGA
CTATCTATTGGCAGGTCGCAACATGGGTTGGCTACCTCTTTTTGTCTCAA
TTGTGGGATCCTTCCTGTCTGCTATCTCCTTGCTTGGGATTCCCAGTGAG
ATTTACACGTATGGTGGACAGTTCTTTTTGACCATAGCATCATTCTGGGT
AGTGATGCCATTATGTATCTTCATCTTTGCACCGTTGTATCGAAATATTG
GAATTACAAGTGCTAATGAGGTTTGATGCAGACCCGTCAATTCGTAACAC
ATTTTGGGGATTTATCTTCGGGTACACATTCACATTGATGCCTTTCTTCT
GTTGTGGACAAATCTGTGTGCAAAGATATCTATCCGCCAAGTCGAACGGC
GGTATGAAGGGCGTGATTTGGACCGACGTTTTTCAAACTTGTATCATCTT
GATCGGTTTGATTGTTGTCTTAATCATTGGAACGACTCAAGTGGGATCAT
TTGGTGACGTCATCAAGATTGCTAGTGATGGTGGAAGGACTGACATCTTC
AGTGGCTGGCTTACGATTAGAAATATCACTTGTGGTGACAGTCATCATTT
GTAATATCTACACCACTATTGTTATGTACTTATCAGTGGTGATGTATGCT
CCGAGTCTTGCACTGGAAGCTGTACTTGGAATTGCGATTCTCAAGACCAG
TTCGAATATTTGGAGGTGTTCTTTTCATCTTGCAGACAATGTCGGAGCTA
TCAGCTTGGGATTATGTTGTGTTCGCTCTAATGCTGGTTGGATCAAGTCT
CATAGGTCTTTATCATGGTTGGAAAGGTAGTCGAGTCAAGGAGGATACAA
CTGACTATCTATTGGCAGGTCGCAACATGGGTTGGCTACCTCTTTTTGTC
TCAATTGTGGGATCCTTCCTGTCTGCTATCTCCTTGCTTGGGATTCCCAG
TGAGATTTACACGTATGGTGGACAGTTCTTTTTGACCATAGCATCATTCT
GGGTAGTGATGCCATTATGTATCTTCATCTTTGCACCGTTGTATCGAAAT
ATTGGAATTACAAGTGCTAATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036067XLOC_036067Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057254-proteinTCONS_00057254-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057254-exon-scaffold_286-1575043694:449824..450204TCONS_00057254-exon-scaffold_286-1575043694:449824..450204Clytia hemisphaericaexon
TCONS_00057254-exon-scaffold_286-1575043694:448621..448686TCONS_00057254-exon-scaffold_286-1575043694:448621..448686Clytia hemisphaericaexon
TCONS_00057254-exon-scaffold_286-1575043694:447984..448035TCONS_00057254-exon-scaffold_286-1575043694:447984..448035Clytia hemisphaericaexon
TCONS_00057254-exon-scaffold_286-1575043694:446949..447016TCONS_00057254-exon-scaffold_286-1575043694:446949..447016Clytia hemisphaericaexon
TCONS_00057254-exon-scaffold_286-1575043694:446490..446644TCONS_00057254-exon-scaffold_286-1575043694:446490..446644Clytia hemisphaericaexon
TCONS_00057254-exon-scaffold_286-1575043694:445726..445854TCONS_00057254-exon-scaffold_286-1575043694:445726..445854Clytia hemisphaericaexon
TCONS_00057254-exon-scaffold_286-1510915933:449824..450204TCONS_00057254-exon-scaffold_286-1510915933:449824..450204Clytia hemisphaericaexon
TCONS_00057254-exon-scaffold_286-1510915933:448621..448686TCONS_00057254-exon-scaffold_286-1510915933:448621..448686Clytia hemisphaericaexon
TCONS_00057254-exon-scaffold_286-1510915933:447984..448035TCONS_00057254-exon-scaffold_286-1510915933:447984..448035Clytia hemisphaericaexon
TCONS_00057254-exon-scaffold_286-1510915933:446949..447016TCONS_00057254-exon-scaffold_286-1510915933:446949..447016Clytia hemisphaericaexon
TCONS_00057254-exon-scaffold_286-1510915933:446490..446644TCONS_00057254-exon-scaffold_286-1510915933:446490..446644Clytia hemisphaericaexon
TCONS_00057254-exon-scaffold_286-1510915933:445726..445854TCONS_00057254-exon-scaffold_286-1510915933:445726..445854Clytia hemisphaericaexon
TCONS_00057254-exon-scaffold_286-1491911889:449824..450204TCONS_00057254-exon-scaffold_286-1491911889:449824..450204Clytia hemisphaericaexon
TCONS_00057254-exon-scaffold_286-1491911889:448621..448686TCONS_00057254-exon-scaffold_286-1491911889:448621..448686Clytia hemisphaericaexon
TCONS_00057254-exon-scaffold_286-1491911889:447984..448035TCONS_00057254-exon-scaffold_286-1491911889:447984..448035Clytia hemisphaericaexon
TCONS_00057254-exon-scaffold_286-1491911889:446949..447016TCONS_00057254-exon-scaffold_286-1491911889:446949..447016Clytia hemisphaericaexon
TCONS_00057254-exon-scaffold_286-1491911889:446490..446644TCONS_00057254-exon-scaffold_286-1491911889:446490..446644Clytia hemisphaericaexon
TCONS_00057254-exon-scaffold_286-1491911889:445726..445854TCONS_00057254-exon-scaffold_286-1491911889:445726..445854Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_286supercontigscaffold_286:445726..450204 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.221045	0.0538885	0.0625697	0	0	0.058889	0	0	0.0931352	0.115363	0.279935	0.184019	17.7882	14.4275	4.14205	13.8403	0.456329	0.850404	22.5577	18.5643	2.40434	1.48549	2.34438	3.68671	14.4769	15.7797	0	0	0	0.124983
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001734Na/solute_symporter
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
biological_process GO:0006810 transport
cellular_component GO:0016020 membrane
molecular_function GO:0005215 transporter activity
Blast
[Close]
BLAST of TCONS_00057254 vs. Swiss-Prot (Human)
Match: SC5A8 (Sodium-coupled monocarboxylate transporter 1 OS=Homo sapiens GN=SLC5A8 PE=1 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 1.707e-61
Identity = 113/261 (43.30%), Postives = 169/261 (64.75%), Query Frame = 1 
Query:   64 WDYVVFALMLVGSSLIGLYHGWKGSRVKEDTTDYLLAGRNMGWLPLFVSIVGSFLSAISLLGIPSEIYTYGGQFFLTIASFWVVMPLCIFIFAPLYRNIGITSANEYLELRFSRPVRIFGGVLFILQTVMYLSVVMYAPSLALEAVAGLRLEISLVVTVIICNIYTTIGGMKGVIWTDVFQTCXXXXXXXXXXXXXTTQVGSFGDVIKIASDGGRTDIFRFDADPSIRNTFWGFIFGYTFTLMPFFCCGQICVQRYLSAKS 846
            WDYVVFA MLV S+ IG+Y+ + G   ++ + D+L+ GR M  +P+ +S+  SF+SA+++LG PSE+Y +G  F +   +++ V+ +   +F P++  +GITS  EYLELRF++ VR+ G VLFI+QT++Y  +V+YAP+LAL  V G  L  ++V T ++C  Y T+GG+K VIWTDVFQ  I++ G   V+I      G    ++  A DGGR + + F+ +P  R+TFW  I G TFT    +   Q  VQRY+S KS
Sbjct:   13 WDYVVFAGMLVISAAIGIYYAFAGGG-QQTSKDFLMGGRRMTAVPVALSLTASFMSAVTVLGTPSEVYRFGAIFSIFAFTYFFVVVISAEVFLPVFYKLGITSTYEYLELRFNKCVRLCGTVLFIVQTILYTGIVIYAPALALNQVTGFDLWGAVVATGVVCTFYCTLGGLKAVIWTDVFQVGIMVAGFASVIIQAVVMQGGISTILNDAYDGGRLNFWNFNPNPLQRHTFWTIIIGGTFTWTSIYGVNQSQVQRYISCKS 272
The following BLAST results are available for this feature:
BLAST of TCONS_00057254 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SC5A81.707e-6143.30Sodium-coupled monocarboxylate transporter 1 OS=Ho... [more]
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