TCONS_00057178 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057178
Unique NameTCONS_00057178
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length998

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057178 ID=TCONS_00057178|Name=TCONS_00057178|organism=Clytia hemisphaerica|type=transcript|length=998bp
CCAACTTAATGCTACCTCCATTAAAATCGATTTATCTGCCGTGCCAAGGA
TAAGATACTCTATATATAAAGctgAAGAGAATTTCACAATTAAATTAAAC
GAAGATTTTGTCTCAAACAAACAACATTGTACCTCACTTAGAAAGAAAGA
TATAACCATTCCTTTTCTGCTAAAATTCCCTGAATCTGCATTCGGGAATG
TGACTGGTTCGTTAACAAAATGGAAACCAATCATTATGAGAAAGGGGAAA
ACTAAGGTCAACAGATATCGAGTTACTTGGGCAATCAAAAGAAATCCCAA
GAGAATAAAATGTCCAAACAAAACGTCTTTTGTCAAACTTGGAACCACTC
TCATTCGAGATAAAACTCGAAATATATCAAGACCCTTGATGTTCAAAGTC
ACATATAGCTGCAAGAAGAAATCCTCAATAGATTTAGGTGAATTGTCGGA
AAAGAAGACATCCTTGGTTGATTTCACTAAAAATAATCTACCATGGGCTG
AGGTCAAACTGACGAAAATTCAAAAAGGAAGATACAATCGACCACCTGTG
GTTGCTAATGGTTACGAAGTAGTTGTTATTGAAGGTTGTAGAGGAACTGT
GAAAATACCAGTATTTGACCCAGATGGAAACGAGATCAAGTGTAAATTAT
TGAAAACAACTTTTGAATGTCGGTCAAAAGATTGTAATCAGCTATCATAC
TTTATTGTGGATGAGATAAACTGCATGATAACATTTACTGGTGCTAAACC
AAATGCATCGACCAATCACCATACAATGTCAATGCATATTGAAGattttg
accaatcagaaaGCAGTATCACTGGCCTCAGCCAATCATTAAGCCGCGTT
CGTTTCGacatgaaaatcaaatttttatcgAGGAAAACTACAGAATGCGG
GAATAGGCCGAAGCTCATTCGGACTCCCTTTGAAAACTGTCGATCTGTGA
AAATTGGAGAAAGATTAAAGTTAAAGTTTGGTGCAAAAGAAAATGCAG
Run BLAST on NCBI

transcript from alignment at scaffold_286:185721..192466+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057178 ID=TCONS_00057178|Name=TCONS_00057178|organism=Clytia hemisphaerica|type=transcript|length=6746bp|location=Sequence derived from alignment at scaffold_286:185721..192466+ (Clytia hemisphaerica)
CCAACTTAATGCTACCTCCATTAAAATCGATTTATCTGCCGTGCCAAGGA
TAAGATACTCTATATATAAAGGTTGGTAAACGTGATCGAATCTTCAGATG
TTCAAATTTTGGTACACCTCCAGTCATATATACAGTCAGTTTGACTCATc
ataatttcaaattattctaCTGGTGACCTGGGGGTGGGGGGGGGCANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNaaattgcttcattagtttttcctgatttttggc
agaaagatagagtgcaaggtaccctaaaatgtggctgaagtaatttttct
cggaaattttttttcgtcgtaaaatacggatctTCGCAAGAttaggccaa
aaactacctaaaaataagtttttttggacttggtgcaatattgcttcatt
agtttttcctgattttttggacaaagatgaagggcaaggttctctaaaac
gtgactgaagtagtttttttcggaaaatttattttggtcgtaaaaatcgg
attttcttatttggggaaattcccttttgtcatatttagggaaaatgagc
atttctcgagattggcttggtgTNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTG
GTGAGAATCTTTAAGGTCGCTTCAAACATTACACATAAATTTCACAACAA
TTTCGTtttctttcatctttttcaaTACATATTATTGTTCAATGACTGAA
CACGAATAGTGTTCAAATGTCTATTTAAATTAGAGGCTAATAGTCTATTC
TAGTTTATCAGTCTCAATATTATGCCTCATTTAGAACTATAgtattcact
ttttttcaattttagctgAAGAGAATTTCACAATTAAATTAAACGAAGAT
TTTGTCTCAAACAAACAACATTGTACCTCACTTAGAAAGAAAGATATAAC
CATTCCTTTTCTGCTAAAATTCCCTGGTAAGTGAAACTCCAACTTCTCTA
CATTTGATTACCATACTTGGATTGAATTTATGCATTTTCCATAGCTTTTT
GAACTGTTTTTTAACATTTGATATAAAGGTGTGTGTCCTAATACTTGAAT
TGAAATTGTATTCCCCTTTATGCCTTTTCCATAGCTTTTTCTGTACTCTt
ttcttacacccctgtctaaGTGACACAGGATACGCCGGAATTGAATAAAG
GTGTGTTCTAATCAATGATTTTTGACCGGGGTAGAGAATTTCAAGAGAAT
TTAGTCGGGATTACTCGTTATCACACCAGCTTAAAATTAGGCCTTTTCTG
GACAATTTTTTTCACCAGGTTAGGGGTGTTTCTAGGTTGATGTGAAAGGA
TGTACTATTTTCTGGCGCGTATATGGCTGTTGTTTTAGTATTTGCCTTTT
TGATTCATCTGGCTTCAGATGAACAGGGGTGTTAaaatgcacgtttttta
taagaatgcccAAAATTTCAAAGCGTTTGGATGTTCAATTTTACAGTTTC
TAGCCTAAAATTGATCTCAAAATGCTctgattttcaacattttgtgagta
ttagTTGTAGGTTTGATTGGATgtccgcaaagccttagaatgttcttaac
ttgctcttaacattttacccatggaagccttatgttcttatatagtttgt
tctcaaattaaaaaaaagactttgatttattgtttagaacttaaagtttc
atgccgcccgtatggacgacaatcatcagctaataaaaatcgtttgaaaa
atattcatatacAATGGCTTCTTCGTCTGAAATTCTAACGTCAATTTTTA
GGTGACGCCGAAGTTCatgagtaaatttttatttctgtGTCAACATTTTG
TGACAATTTCAGTTCGTTTATTCAATAAGTTTTTGCCTGGGTAATTGGCG
AATTCAAATTTCTCGCACAAACAAAGTTGACAGTTTTTTGCTTCAGGTGA
GTATGCTTTCGCGTGTCTCACAACTCTCCAAGTTACCGATGGCGTACCGT
TTAGTGTGTGAAAGAAGTTTTATGTGTCGAGTGtctatagtttgttctca
taagaaatatacatcactataattttgtttgcttttagAATCTGCATTCG
GGAATGTGACTGGTTCGTTAACAAAATGGAAACCAATCATTATGAGAAAG
GGGAAAACTGTAAGTGTGTTCGGTTCGGTTCGGTTCATTGAGGaaacacg
tttttataagagaaGTTAAATTTGGATAGCCTTCGgctgttcttaacatt
tttagttcaagcctaaaaaggttcttaacctgttcttattttcagtattt
tgtGAGTATTCTTGTGCAATTTACTTAAACTGAGTGttctagagtccgca
aagctttAATATGGTCTTAACTTATCATTACCATTTATTGTTAGGCGGTt
aattaatacaataatgaccagtTTTTTACGGTCTTTACTTGCCCTCACTA
ACCgttcattattgtattaaagtCAAACGCTTTTTTTGCCATCATTGTTT
TATCACAGATTTATAAAATGTATAAATTTTCAACTGAGGATTGTTTGAAT
AAGACACATGAAACTGACAGTattgaaacaataattttcattacttcAAC
TATAtgataaaatttataaatatatattgttgctattgttttaaatgcaa
agcttctgattggtcaagcgctgaaattctattgtaatgtgacgtgacct
aggtaggatttccttaCTAgatacggcacacttttcagccaaagcacgac
atctagcctatcgggctttataaatctgtggttTTATCTAATACCTGTAT
TCATTTCTTTCGCCAGAAGGTCAACAGATATCGAGTTACTTGGGCAATCA
AAAGAAATCCCAAGAGAATAAAATGTCCAAACAAAACGTCTTTTGTCAAA
CTTGGAACCACTCTCATTCGAGATAAAACTCGAAATATATCAAGACCCTT
GATGTTCAAAGTCACATATAGCTGCAAGAAGAAATCCTCAATAGATTTAG
GTGAATTGTCGGAAAAGAAGACATCCTTGGTTGATTTCACTAAAAATAAT
CTACCATGGGCTGAGGTCAAACTGACGAAAATTCAAAAAGGAAGATACAA
TCGACCACCTGTGGTTGCTAATGGTTACGAAGTAGTTGTTATTGAAGGTT
GTAGAGGAACTGTGAAAATACCAGGTAATTCTACAATCACCTGCAAAAAT
TATGAGACATTTTGGCTCATTTGGGTTCCCGCGCCCCCAATCAATGTTGC
CTTGGTGGGACGTAATTTTGACTACGGAAAATACTTGGATTCAACCAACA
TTACCTTAGGGGGGAGGGGAACTCACCAGTCTCATGAATTTTTGCAGAAG
ATTGTAGGTAAATAGTCTGACAAAGTCTCTTTGTACTATTTGTACTACAC
ATTCTTATAcaagcaaccaggttgctaagtAACTAAGGCTCAATTTTGCC
AATTCCTTTTCACTATCTTCGTTaattaaaagctttttagacaATCTAAC
CATGGTTGTTATGGCAACCCTTgcccaataagcataaatataatataata
tcaAGGGGTgttcaaatatttcagaaaatgaaCGCTAAGCAACCTAGAGA
CTGACCTGAAAATTGGAGTTGGTTATAAAGAAATATGTGTACCCTCCATT
CTACAGTTTTCCTACTGTCTTAACCCTTAGAAGGCGAAAGGCGTATATAT
ACGtcttgaaaaggtcattttaccgatacacaatcttttggtcataactc
ctgaccacttgagattcagagaaaaaaaatctgctattttttgtagctga
gaaaaagagctttccaacgataccaaagctGATACCTGAATCATTTGTCC
TGGTcaagaaattgcctttgaaagaataaatttcccgaaaaaaatgatga
actttttggcctttttcaaaaaagttagcggcTTGGAAAGGTCAAGATTG
ATCTTCTTCCATCTCATCTTCTCATTCCTTATAAGGAATAACCAAACAAA
TCATCTCAAAATAAATATCAAGCCTTCGTTTTCACTTTAATTTTTAGTAT
TTGACCCAGATGGAAACGAGATCAAGTGTAAATTATTGAAAACAACTTTT
GAATGTCGGTCAAAAGATTGTAATCAGCTATCATACTTTATTGTGGATGA
GGTAATCAATAATTTTGTTCTTTGAAGTCATGATATCGAATTTCAAGTAC
ATTTAGTCTTTTTCACCTTGAAGTTAAAATACAACCGTTTTTAACGAATT
CAAGGAAATTCGATTTGTCACCTTTAATCCAATTTTCGTTTGAACACTTT
TATACGatttcctcaaattcgcgaaagaaaaaaaattgtaaacttCGTGA
TTTCTCGACCTCGAAATTGTGATTTGAAACTCAATcattctgtaattcga
acaaaaaacaATTAGCTTACCATAACTCGAATCCGTCTATCattttataa
ttgaaaaaaaagaaaatcttggttcattaaagtttgaaaagtaaCAGTCT
TTGGACATTTTAGATAAACTGCATGATAACATTTACTGGTGCTAAACCAA
ATGCATCGACCAATCACCATACAATGTCAATGCATATTGAAGattttgac
caatcagaaaGCAGTATCACTGGCCTCAGCCAATCATTAAGCCGCGTTCG
TTTCGacatgaaaatcaaatttttatcgAGGAAAACTACAGAATGCGGGA
ATAGGCCGAAGCTCATTCGGACTCCCTTTGAAAACTGTCGATCTGTGAAA
ATTGGAGAAAGATTAAAGTTAAAGTTTGGTGCAAAAGAAAATGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036030XLOC_036030Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057178-exon-scaffold_286-1491911889:185721..185791TCONS_00057178-exon-scaffold_286-1491911889:185721..185791Clytia hemisphaericaexon
TCONS_00057178-exon-scaffold_286-1510915933:185721..185791TCONS_00057178-exon-scaffold_286-1510915933:185721..185791Clytia hemisphaericaexon
TCONS_00057178-exon-scaffold_286-1575043694:185721..185791TCONS_00057178-exon-scaffold_286-1575043694:185721..185791Clytia hemisphaericaexon
TCONS_00057178-exon-scaffold_286-1491911889:188536..188646TCONS_00057178-exon-scaffold_286-1491911889:188536..188646Clytia hemisphaericaexon
TCONS_00057178-exon-scaffold_286-1510915933:188536..188646TCONS_00057178-exon-scaffold_286-1510915933:188536..188646Clytia hemisphaericaexon
TCONS_00057178-exon-scaffold_286-1575043694:188536..188646TCONS_00057178-exon-scaffold_286-1575043694:188536..188646Clytia hemisphaericaexon
TCONS_00057178-exon-scaffold_286-1491911889:189759..189829TCONS_00057178-exon-scaffold_286-1491911889:189759..189829Clytia hemisphaericaexon
TCONS_00057178-exon-scaffold_286-1510915933:189759..189829TCONS_00057178-exon-scaffold_286-1510915933:189759..189829Clytia hemisphaericaexon
TCONS_00057178-exon-scaffold_286-1575043694:189759..189829TCONS_00057178-exon-scaffold_286-1575043694:189759..189829Clytia hemisphaericaexon
TCONS_00057178-exon-scaffold_286-1491911889:190487..190844TCONS_00057178-exon-scaffold_286-1491911889:190487..190844Clytia hemisphaericaexon
TCONS_00057178-exon-scaffold_286-1510915933:190487..190844TCONS_00057178-exon-scaffold_286-1510915933:190487..190844Clytia hemisphaericaexon
TCONS_00057178-exon-scaffold_286-1575043694:190487..190844TCONS_00057178-exon-scaffold_286-1575043694:190487..190844Clytia hemisphaericaexon
TCONS_00057178-exon-scaffold_286-1491911889:191718..191821TCONS_00057178-exon-scaffold_286-1491911889:191718..191821Clytia hemisphaericaexon
TCONS_00057178-exon-scaffold_286-1510915933:191718..191821TCONS_00057178-exon-scaffold_286-1510915933:191718..191821Clytia hemisphaericaexon
TCONS_00057178-exon-scaffold_286-1575043694:191718..191821TCONS_00057178-exon-scaffold_286-1575043694:191718..191821Clytia hemisphaericaexon
TCONS_00057178-exon-scaffold_286-1491911889:192184..192466TCONS_00057178-exon-scaffold_286-1491911889:192184..192466Clytia hemisphaericaexon
TCONS_00057178-exon-scaffold_286-1510915933:192184..192466TCONS_00057178-exon-scaffold_286-1510915933:192184..192466Clytia hemisphaericaexon
TCONS_00057178-exon-scaffold_286-1575043694:192184..192466TCONS_00057178-exon-scaffold_286-1575043694:192184..192466Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_286supercontigscaffold_286:185721..192466 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.23022e-05	0.00115689	0	0	0	0	0	3.8912e-09	0.52659	0.462058	0.00135891	0.394442	0.299929	0.000249118	0.378619	0.000508338	0.350857	0.96772	0	0.000992647	0.00255129	0.508568	0.752655	0.835761	0.318241	0	0.000648172	0.283601	0	0.00266761
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057178 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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