TCONS_00057172 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057172
Unique NameTCONS_00057172
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length796

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057172 ID=TCONS_00057172|Name=TCONS_00057172|organism=Clytia hemisphaerica|type=transcript|length=796bp
TTTCACATTTGTCGGGAGTTAAAATCCAAAGTAAAAGCCCTAGAAAACTT
AAATCGTGACGTTTTGTGTCTGATTTTGGTATTCAGGTTTTCTCCCAGGA
TAAAAAAACCGTATTTCGGTGCGGGAGCAAGCGAAAGTGCACTGTTTTCA
GTCAGATTTTACTCGGGGAAGTCAGGCATTTGTTGGAACCATCATGGCAC
TTTCATTCTCACGAAGACTTTTAAAAGTTAACAATCTCCGTGCCATCCAA
ACTGTTGTACAATCTAGAAACTATGCTGAAGCATCTGGATCTGCTTTAAA
CCTTACTTTTGGCACTCCAACACAGGCTTACTTCAATGAAGAACCAGTCA
CGCAAGTCGATGTTCCATCAGGTTCCGGCAACTTCAGTATCTTAGCCCAA
CACGTGCCAATCATTGCTGCCCTTCGACCTGGTCTTATGACTGTTTTCAG
TGAAGGAAACGCACAAAAGTTTTTCGTCAGTAGCGGCACCATCACCGTCA
ACAGCGACTCCAGTGCACAAATCTTGGCTGAAGAAGCCCAACCCATCGAA
AACTTTGACGCTGATGCCGCCCGACGAACCGCCGATGCCGCGCGGACTGC
TTTGGCCAGTGCAGCGGACGAAGCTGGTAAAGCCGAAGCACAAATTCAAC
TAGATACTTGTGAAGCTTTACTAAACGCTTTAGAAGGAAAATAAATAAGC
AATGAATGATCCTTGGTGGAATGTTCTagtttaaaatataaattttaatt
tgttttttgaaaaaaaaaatacaaaagcataatatcaaaatcaaac
Run BLAST on NCBI

protein sequence of TCONS_00057172-protein

>TCONS_00057172-protein ID=TCONS_00057172-protein|Name=TCONS_00057172-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
MALSFSRRLLKVNNLRAIQTVVQSRNYAEASGSALNLTFGTPTQAYFNEE
PVTQVDVPSGSGNFSILAQHVPIIAALRPGLMTVFSEGNAQKFFVSSGTI
TVNSDSSAQILAEEAQPIENFDADAARRTADAARTALASAADEAGKAEAQ
IQLDTCEALLNALEGK
Run BLAST on NCBI

transcript from alignment at scaffold_286:126830..142238+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057172 ID=TCONS_00057172|Name=TCONS_00057172|organism=Clytia hemisphaerica|type=transcript|length=15409bp|location=Sequence derived from alignment at scaffold_286:126830..142238+ (Clytia hemisphaerica)
TTTCACATTTGTCGGGAGTTAAAATCCAAAGTAAAAGCCCTAGAAAACTT
AAATCGTGACGTTTTGTGTCTGATTTTGGTATTCAGGTTTTCTCCCAGGA
TAAAAAAACCGTATTTCGGTGCGGGAGCAAGCGAAAGTGCACTGTTTTCA
GTCAGATTTTACTCGGGGAAGTCAGGCATTTGTTGGAACCATCATGGCAC
TTTCATTCTCACGAAGACTTTTAAAAGTTAACAATCTCCGTGCCATCCAA
ACTGTTGTACAATCTAGAAACTATGCTGAAGCATCTGGATCTGCTTTAAA
CCTTACTTTTGGCACTCCAACACAGGTATCAATTTTTTATAAACCAGCTT
CagataacaaaaaattatttaaaaagatTACCTAAGCGATGTTAATCGAA
TAATCGAACTAATCCAATGATAACTGTTTGATTAGCAAACCAAATCGAAA
TTGGGAAATTCGTTTGACTAGTTTGATTCATTTTCAACATGTTGGTTTTA
TGATATTTGCTTGTATCTTCCCATTATCGCAGCGCTTAATTCTGTGGGCT
TCTGCTAATCTAATTGTAGCAGTTTGGTCATTTTTTCAAGCTACTTTAAA
ACTTTGTGTAATGTTGACATGCCGTGAAATCGGGTACCAACTTGCATCAC
TGCACTGCCACTGGGTCTGGGCAGGGTCTGGGAGGGAAACATGCATAGCG
ATGGGTGTTTAAAATTAATTTACTTGTCTGGTCATCAAatggaaaattaa
aaagaacATGTAATGAATCAAGGAAAGATTATCATAATCCAGACAGGTCG
TAATCaataaaatcgatagctaatGGGCCATCCCAGAAAATGTTTGTTAC
CCCACACAAGTGTtgcgcgtaagccaaatcgtgtattacgaacaacctct
aaattgccgagtacaggagaaaaaaaatggaaattcaaaatggcggctaA
GCCCatgctgataactatcaaaaatctttgtatttcaatcagctattgca
gctcaataaatcaatgaaataatttgaaataaaaagtaaacaaaccttga
acctttcaggAATGGTTGTGCTTTCTTCACAAAGActaaagacagatctg
gacttattttgtactttccagcagttacatcaaaatgcctcgaaaatgtc
aatatgaaaattgcataatcagagaacgtatgtcttgctcattataaaaa
aactgagacaaactttcaataattggattgtaacatcgagttaagtctct
tttgttaagtcaccaggggttaaataaaacagaccttgatacatttattg
tTTGTTTCAACTCGACGATTAgcttaaaactcagcctcctaaatatttgg
ggtaggtaaaatatgtacaaagaaattcacacttttccaacccggcaaat
ctttaaaaaagaagcgaacaataaaatataattaccctttccaaataaac
ctcttcggtgacgagcgtagtctactctgacgtaattgtaaaatttatgt
gatgggagtttgacatatgCTTGTACTCTCTGTGTATTTACATTTgttgt
aatgtaatgttgtttggggaattatgaagttctctggaatttcgattgca
tttattcaggttgattttctATGatttctaatggtactttttctaacgag
tttgattactctgttctcacacttatgtcttttttttcgcgtccttttcc
gtgattacttttatttgtatttttaaagataggtaagaaggcatattgat
gtaactgtccagtctcttgttcgtagtttttctgactttctggttctttg
tgagttattttctatgttttctaacttactgaatgacttaccgacagatc
gccatcGGTGGGATTCAAACCCACTAAATACAAAGTTCCGATGATTTGAA
ACccattgccttatccactgcaccacggattcatgccaggatagtgtttc
tgacggctatttatattgtacaaactgcagaccagactgtattaagagaa
aatcacaaaagagtgcttgtttcgagctccaaccctaaccctaaNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCATatccaacc
ctaccaggtcgcctgcaggtcctgacactattcccgcatacctgatccga
aaaatagatacatgtctttcgtctttatgaggaatccaaataaataaaag
tattcatccaaagtgaagattacatttcaaaataaacgatttccaaacca
acctaaagtcagtgtctgccaactaaaaatttctctgcggggcaaggagt
tacgacttccaactttaaacaaacttcaaaataaaattgtaatGATCTTG
Ttgcttaaaatatcacttacttacataatatatttatgatataacaccct
tTTCTTAAATAAATAACCTGttaacagttacatcaatatgccttcttact
gTACaggtctttaaaaatataaacaaaagtaATCACAGAAAAGAAcacaa
aaaaaagacataagtgtgagaacagagtaatcaaactcgttagaaaaagt
accattagaagtcataaaaaatcaacctgaataaatgcaatcgaaattcc
agagaacttcataattccccaaacaacattacattacaatGAATGTAAAT
ACACAGAGAGTACAAGcatatgtcaaactcccatgacataaattttacaa
ttacgtcagagtagactacgctcgccaccgaagaggtttatttggaaagg
gtaattatattttattgttcgcttcttttttaaagattcgccgggttgga
aaagtatgaatttctttgtacatattttacctacccaaatatttaggagg
ctgagttttaaacgaatcgtcaagttgaaacgataaatgtatcaaggtct
gttttatttaccccctggtgacttaacaaagagacttaactcgatgttag
aatccaattattgaaagtttgtctcggcctttttataatgagcgagacat
acgttctctgattatgcaattttcatattgacattttcgaggcattttga
tgtaactggttaaagtcttttatgtttgccgcaagaagggagaaaaattt
aatttcacccccggttttttctctctttttctagcaaTTTCCcacgtgtt
agtgtagacacaactttaatccggggaaatgaagctttttcattggtcta
aaatcacggatggtcacgtgactagaatttttatccagggaaatgccgtg
gtggcaatgttttgctttagtgagattgaccattttgttgttttgatttg
agcgggcaaaatttctatacaaaccaaaatatggctttgttggaataccg
gttgaaacacttgtgccCAGTTTGGTGGGGTacagaggcagggtactaac
ccatagggtactacaggcatcgaaataagggatagaaaTTGCAtcacaat
tttttgataagcatgattttgcatcctaaaatggatctcaattttcaatt
tttaggttataagtaatccaaaaacgcatcgcgaattgcgaaatttctca
aaagagtaaaaaaaatttgtcgattaaaaagatttcaaatcaaaaaaatt
aatatttgaaaaaagtcaaaatattacaacaaactactttttttattgaa
aaacagcaaaattatgtgaaaaagtacccaaatagtatcctgtacttgct
tgaagagtgaaaaatacacatCCCCACCCCCAAGGTAGTACCGTGTACTA
ACTTTtatgaaatgcaaaaatagacaccaccaccctggCTATGGGTCAAT
ACCCTGTGTCTGTACTCCCCCCAGGTTACCCCCCCGTCAGACGATGACTT
CGTCGATGTGCTttttttttctagcctcggaaataacTTTTCTGAAAATT
CATGAATTCTTGCAAAATGCAtcagaaattccactcttttttgccttttt
taattcaattaaaATCTATAATCAATAGCTAATCAATATTTGTCCTCAAT
TAGCTATCAATTGCTATCAATTacagtactcttaggtgccaaataaacag
cccccccccccgcttgttaattttccaaaaattttccaacccctctttat
ttgaaccccccccccccgttttttaatttttaaaaaattttccccccccc
cttttttttacccccccccccccgtttatttggcacctaagagtttTAAT
CGATTGGTGTTTTGTATTGGTATTACAGTATCAAAATTAATCGATGGTTA
aataagagccagttttttaaggggcagttccaatagtttgaaacatagat
ttttgtcattttttgatattttttttaagtaaaacGAACTCTGAcaaact
gagtaaaatcccaaaatattttggtctgaaaattcATAATGCCGGATTTg
tgccaatttgaagtttttgacatttttggcattgcacttaaaaagttttt
tgatatagaaccatgctttctcaaatcaaaatgaggatatggtttttggt
gattctgaaactatggccGGTAAActatataattttcaaaaaaaatcaaa
attttgaaaatggtagctggagttatgacatacattctgataaataacaa
gattgctcacgggaatttctaaTCCGCGCAAGTAAACCCGCATCTGTCAA
TCATCTTTTaaacctgtcaatcattttttagaagcattttctgtcagttt
tgcttttcttttcacttatggttctgaaaaaagtgtttgtaagataaaaa
aagacgaaagcatagggtcctccagggttcaggtacccccaaaaAATTAA
GGTACCCCCAATCATTTTGGTACCcctaaaatttttagaattctaaagta
accccccccccaactttgagttacccctttttcaattttttttattattg
aaaatacaaaaaggaattttttgctcttttgtcattcctgggAGAATACT
TCCATAGCGGCCAGCacttctttttcaacaaataGAAGGGTGTCATTTTG
ACTATAATTTTCCAGGGTTTCAAGAGATTTTTATATACCAAACTTTCAAG
GGTTTCTAGGGCTTTTAGTTGATCTTTGctagttttcaaagatttcaagg
aAATCTGTCGACAAAAGGaaaaaggttgaattttcaatttttgtgtaaAG
GAGGGCCCTTAAATTGGCTGATAATTgtaattgataattttacaaCCACC
CATTCTATCACCCAGACCTGCCAACCTCATATAATTccagtggcacttaa
agggttaaaaggtAAACCCCCTAAGAATGAGCGTGGAATACCCCCTTGAG
TCTCAGGGGTTCCAAAagtatgttttctcatttttaagtcACTGCNAACT
ACGGTGTTTGTATCCCAcgcaatgggaaaaattttgtatttctgaaagtt
aaaatggctgaaaatggccACAAAATTTGGTATTTCAAGGGTATAAATAA
ATCTTGCATTTCAAAGGTCCCCAAAATAATATTGacttttcaagggtgtt
tcaagggtttcaaggaattTAAGGGTGATgacttcatacaaaaacaacaa
cccCTGCCCCCACTAATGAAAAtgcaggtacccccaaacatatcaggtTC
CCTctaaatttaagaatacttccaggtacctggcttttttaacacttttt
ttttaggtacccccaaatctCTGGGGGGGCTGGATCCTATGCTTGAGGTG
TAGATAAATTATTTACAATGATTAACAATaccatattttatttttatttg
ccatgacctgtataattttatttaccaTATCAAGGCATTAACttcttaaa
caaatgattttagatcaTTTCCAACATGCGGGAGCCGATCACTCATCGAG
ATTTTCAGGACTCTTTAGTTGAAGAGTGACTCTTCTTGATCGTCTTGACT
CTTATTCCAATTCTGTAAGGGGACTGTAGCAAACATGCTGTAAACCCTGC
TAGTGCCTATAGAATTAAACacaattaaacaaaaaatccccatgagcaat
ctcgttatttatcaaaaagtatgACATtacaaaaacactacaaatttgat
tttaggggtattttagagccatctgacctgtCCCAAGGGAGTTtgttcct
gctcaaaataataatttctgTTAGTTCAGTCCCTGGTCTATCCATTTTTA
AAGTTATTGCAATAAAAGTTCCGGCCCTACTGGCCCGTAGAGGCTCAAAA
AGCCAATTAGGTCTCgaaaaagtaccaactttagcccaattttcctagaa
ataaCAACATTGTCTGGCCTCCAACTCTTCTGTTCCTGAAAGACAACTTC
CTGGTCTCCTAGgatcaaaagaaaaacctaaGTAACCTCCTACCTTTAAT
TTTaatcttgatttaaaaaaaataatttaaatcgttcgaaaaatgactaa
aatttgggatattttggcccattggcTAACTTCAAACgggtctaggtcac
tgaattttttattatgtaagggctatgatgaatctcttatataaaaacaa
taaactaagtgaaaaaagttgtcaaatgtgcttttttgggccaaaaagtc
tttttcttcaatttttagaCTAGAGCCCAAAACGAGTACCCATTGAtact
tgattcttgattttgtgaaagcatcctatagataGTGTAAAAATTTATCA
GAAGTTTTCAGTAACCTTTTTCGttcttttaaagattagggCTAGCTCAA
AGTCTGTCTTAACTTTATAATCCTAAAAATCTCAACAAATCtgctcaaaa
caacaatttctGGTCAAGATTGGACAGAAAATGAGCCCTCAAAGACAATG
AAAATCTTAGTTTTTAGAAAGTTTCATGGGGATAGTACAAACTttcatca
agatctttacctCCTGAACTACCATTTAAGGATCAAGTGTGTCAACTAAA
CTCTCAAATCTTTAAAAGTGAACTTTACAAACtccaaaaaacaattttgc
caTTTACCTGCTTGCTCTTAAATGCAGTTAAATGAGCCCAAAGTTCAAAT
TATCCAAATAGAAGGAAAGGTTTAggaatattttgtacttttggacttat
ctcgaaatatttttaatgGTAGAAAGTTCAAGAAGATTCAATGTTTCGAT
TACGAAAATCAAGTcaatactgtaagttggtctagtGTCCAAATCCCTCT
TCAAATTTCAACACCCTTCTTTTCAGAGATGGGAATAATAGTTCTATTTC
TATTGGCAGTCTAGACTGAGCACTTTTTAGctcaatattttgtaaaaaaa
atgccgtatgaacaaaagaaaatagtcaTAGATCAAAGAAATTTACTGTT
AGCCTCAATTGCAATTGATAGCAAGTTGTGGAGAGGctttgaaagtttgt
aaatacatgttgttttttttataagcatacaaaaatccgaaaacaggctc
agagatgcttaggtcgaaagcttaatgaggctgaaaaatgcttgagggga
tgcttaaatctaaagcataaatttagggaaatactgaaaatccgcataat
tccagccaaaaatagccaaaatcaggaaaaaaatatttgttgtcAAGCAA
TGCTTCCCATATGCTTTTTTTCCCCATATCtaagcctagatatgcttata
agtgcaatgcttataaaagaaaaaaacatgtttgCGTGGTGGGTGCcctc
cttaaaaatgaaaaagaaggaaTCAGTGGCTCCCAGGCTGGGGTCCCTCT
AGATTAGAATCGATATAATTCCAGATTTGCTTGCAATTGgtagaaatttg
aaatttagacAGAATGTAGTTTTTTATGCTCTTCAAAGCCAAAGgataaa
agacaaaaaagacaacaaagccattttaaaaactttggtCACAAATCCCC
ATGCTTAAGTTTTGACCTTATCCTTTTTTTCAAAGCCACAATTTTTTCCT
GACAAATTATATTATATCATGTTTTTTGATATTCATTTGTTTCCATTAAA
TCTCATGAAATTGACCTTCAGAACGTAAAAATTGTAGCTTTTCTGGTGAT
GTGAAAGATGGAGAAAAAAGTTTACAGTAGCCTGATGGTGTGATAAGTTT
TTTGTGATAAaaagaaataatcaatgatgaatttaagATAACATCATACT
TTTctttgaaattaaattataCATTATTCTGAATTTTCTTAATAATCATC
CAGTAAAtactaaaaatttcaaaaaaaaataaaatcatgaaaaaaataaa
aatacaattaAAACTACATTGTAGTTGCCAATATTTCTATTGATTGGGCA
AAGTTTTATTTCCAATTTCttctcgcaaaaatttcttcccttaaggtatt
aacAAAAGACACCTTTTGAGTTGTTTGAAAACCTGACATAAGGGGTTGGT
TATATTTTATCGTTATAGAATTTCCTATTTCCATCTTCATGTGTTTGAAT
TATGCCCAATAGATATTTACGCTTGTTTCCTATGACAATatttaaaacac
tttaaaattaaaatataaattgcaaaaataaatGGGAAGCACATGATAAC
CATTTCAAAAGCCAGTAGAAATTTCCCAAGCACAAAGGATGCACCCTTTC
CAATTAGATTTGAATCATTGCAGTATGCCCAGAACAAGTTGACCATTGCT
AAGAGAATCAAAACTAACATTGATGTGATTTGCGTaaagttcaatttctt
tttgttaaatGGCTTTGCAATATAATCATGGATTGTAAACAATACTAAAA
GTAAACTGGTGACATAAAGTTTGGGCATTTGTGGTATTATGAAGGTAGTG
ACAGCCGCTAAAATCAGTCTCCGTGCAATTAGAACAGGTTCCCACATAAG
CTGAAAACCATCTTTATTCTCGTGGAAGGGTTCATTCAGGATGGACAACA
TATGTGCTGCATCATCCAAATTTTCTGGTTTTAAATCGATGTAATTTGAC
TGACATAAACAAGGCCGCATAACTAGATAGTAGACTGAAGATACTGGTAT
AGTTAACATAAACAGGAACTCATTGGGTGTAATTTTGTGTACACGAAGTT
TACGACATCCAAAATATAAAACAAGGGGAAACGGTATGATCCATAAGCAG
ATGATGCCAAGAATAACTTTTTGCATGGGTTGAAAACATTTCACAGATGC
TTGTGTGTATAAATAATTCTCTCCATCAATTACAATGCAGTTGACAGTAT
GAAAACAAAATACTGCTATACTCATATATCCAAGTAGCAAAAGGTTAACA
TAGGCTCCTTTTAGACGTCTCTGAAAACTAGTACGGAATTGAGCGAAGAG
GAGAAGTAACAATGCTACTTGTGAAATTAGGGGTAAACTAGATTTAATCA
ACTCGATTATAATTGGATTTGATGTATTGAGTGGGCATATGTTGAATTTA
CTAGCGTCACTTGTTATGTCGATTCTGATATTGAAGAAAGATATGATTAT
GCTTATAAAATGTGGCACATGGTAGGCTTCTTTTGCGGACGAAACAATTC
TTAAAATGGATGCTGTCTGGTAGAAGAAAAACGTTATTTTGATAATGCCG
GAAAAGGAACTAGATGTCTGCTGTTGTTGTAAAATTGCAGTGTTTTCATC
TTGTAATAACAAGTATGGATGTTCGTTCTCAGTTGATGTTGTCTCTTCAT
TTTGGCTATTTTCTCTCCTTGTTTTTTTACGCGTTGCTAGATTCTTCAAA
AACTTCCACAAATCAGTGCTGTAAAGCAGGAAAAGACATATGAGCAAAAC
ACTCATACAATATCCCAGTATAAATAATCCTTGTGAATCGCATTGCCTAA
ATCTTACACATCTGTTTTGGCTGAATATTGAAATAGCGTGATTTTCCAAG
CAATCTCCGCATAATCTGCCCTTACGTCCCTCCTGGCATGTATCAAAGGA
GTGACATTTATTGAGATTAGGGCAGCAATAGTTTGGTGGGCAAAGGTAAA
AATCTACATAACCTTCCAAGTTGGATTTCCCCCAATAGTTTCCATTGCTG
CGGATACTACCAACACAATAAGCCTGATATGGGCATTTAAAGCATTCTAC
TTTGTGTGTTTTCGAAATATTCTTTGTATCATCCCATAAGATTGAGGATT
TATCAAGAGCATTGTATCTAGTTTCTCTACAGCTTTTGCAACTGATTTTT
AGATAAGTGTCAAATGACCTTCTTGGTGACTCTAGAATTTCTAGATTTTG
TCCTTTCTGACAAGTTATATTCATTTTCTGTAATGTTATGTTTGATGGAA
ATTGAAGAGGTACTACAATAACAGGGATATCTTCAATTGAATTCTGCCAA
TGTTCGCTGTATATCTCTGTTTTAATCATCTCAAAACCAAACTGCTCCAT
AGGACGAGCGTATATTGAACTCACTTGGTTACTGGATACTGAATTCCCAC
GAAAACTACAGTCTACAATATTAAGCTTACCAGCAAAAGATGTTACTCCA
GCTGATATCTCCCTGATCATTGAATATATACCAGCCATCATCGTGTTGTT
GTTGAATGTGGAGTTCGTTAAAAGAGCCTTGACTGAATTCAAATAAACAC
AGCCGGAATCTCCGTtcttaaaaatacaatttaCTATCTCAACTTCGGAA
TCACGATTGTAGTTAGATACTATTTCAAGCATAAACTGATGAGTTGAGGA
CAATCCATAGGAACCTATAAATGAACTGTCCCAAATAAAAACAGTCATTT
TATTATTGTTGAGATTGTTATTATTAATGTGTAATGCAGACTTAATTGAG
AATGCTGCGTAGATCTCTACATTGAATCCATTAATTTCAAACTGTGTTCT
gctaaaaattgtatattttattGAAACAAGTGTTTTTCCCATAAACTCGC
CACTGTTGATATTGATGTGAAGGTTATTGAAGGAACACGCGATAAAATGA
ATACCTGTTGATAATTCTTCACGGGCAATCAAGGGTGCTGAAATATGATA
GCTGGTCTGTTGGGCTTGATTTCTGATGAAATATGTGTTGTCAAAGATAA
TAACAGGGTTATGTGGCGTACTTATTTTAAATAAAGTGTAATTTGTAGAG
ATTTCATCCAAATCATTTGTCGAATTAACGGTTATCTGACAAAACAAAGT
CTGTAGAACCATTGTTCTATTGTGGAtgtcaaaaattgttttaagtTTTG
AATTATAATTTTGGTGACTGAACGATATGCCTGTGAAAGATACATTATCA
TAAATTTCAACGAGGCTANATAATTTTGGTGACTGAACGATATGCCTGTG
AAAGATACATTATCATAAATTTCAACGAGGCTATCTAAGTCTCCGTTAAA
CTGGATCGTTGTAAAATGATTGATACGTTTCTTGTCTGGTCGATAAATAT
TCATTTGAAGAGCTTTTTGAATACACATTGCTTCATTCAAGACGTACTTG
AATCTCGAGTCCAATAAAATGTTATCTCCGTCCAAACAAAGTTGAAGAGC
ATATGGGATTGATTGGCAAGGCTTTGATATATTACCGCAACCAGTAACAT
CCTGACTCGTTGAATCACGTGATATGTGGATATCTTTTTGAAGGGaacct
aaaaaaacaaaataaattaaaaactaTTAGTTTTTATTCCGATGCCACAC
CTTGTTTATTCAGATACCACACCTAGTTTAAAGTGAAGTGTATGGTATGG
TTTCACCTCTCAGTACTTCACTTCAGTACAACGACATTTGGAATTCAGAT
CCAATAAAGGATTTATCGAGATTTTGTTTAAGGCTAAAAACAAGAAATTA
GATTTTCTCTAATACCTCTTACACTACTGCAAATGATGTAGAAAATTACA
AAAGCATTCTTCTCGTTCTTCATTCTCATCATCTAGAAGTAAgttcagaa
aatagaaaataaaaccAACAAGTATTTTTTGAAGCTCTGTCTTGTTATTT
ATTCAGTGATTCTGGAAAGCTTATCAGAGCAAATGCTTAATAAAAACCAT
ATAGCTCTACTCTCCTCTATAATAATTCTCTACTTAACATTTTtaccaaa
atgacaaaattttgttttgatattcgTATTTGTTGTGTAAACATCTAACA
CAATGTTGTGTACAATTTTGTAGCGATTCTTTTATCCATGCTGGAAGCTG
TTAGATTTTTGGATTCTCGAATTACATTTAGTTTCGGGATTGTTTATACT
TATTTAGATTGCCTGTTCATTCCTGTTCAAGCAAGTTTCGAAAGCGAATG
ATGTGTTTGTTTCCCTTATAGTCAAATATAGACTGGTATAGAAAGGTCTT
AAATTATGAATATCAATGCGGATACTTCAAAGTTATctcttttatttcta
tttttaaaaatactaaaaagcTTGAAGCTATATTTACTGCATACTACAGG
GGGTTCGGTACTATGACTACTATaagaattttttgcacaataccCCATTC
TAGAGAAGTGGTATTTAAATAACCATGTACTACAATTTTTAGGGATATCT
TGACACAGAGACCACCCAATTTTGGTCTTTTCAGGAGAAACATTGTCTTC
TCGGGACCATTTTTGCAACATAATATTCATGTTTTGCAAAAATAGAGTTT
ATGAATTGAGCAAACATAAAGGCATTTGACTGAATGCAAAAGTAATTGaa
cttgggaaattttctttaaatgatgaacattttaaactttgtttgaaaaa
ttgcaaaaattctgaaaataattcaaaaagtgataaaaatcaCTGATTTT
AGTCACTGTTATTTTCAATGCCCTGGTATTTGTGCTTTGTCTTGAGAGCG
CTTTGACAAGTTTTCAGTTCACAGGTGGGTGATTGTTGAGAAAAATTGGT
TGTACATTCAAATACCCATTGAAAATCCGAAAGAAGGGGGGgggggttcc
ttCCTTTTCTAGTATCTTTTGTTGTATTTACTTTCAAAGGCGAAAATTTG
TCTTTAGAAAAACAAGAAATCTCGGTTTGCTGATAAAttattctttcttt
ctttgtcAGGCTTACTTCAATGAAGAACCAGTCACGCAAGTCGATGTTCC
ATCAGGTTCCGGCAACTTCAGTATCTTAGCCCAACACGTGCCAATCATTG
CTGCCCTTCGACCTGGTCTTATGACTGTTTTCAGTGAAGGTTAGTTTTCC
TTTGTTTCAATCTTAGAATAGCATTCTTTCAAACGGGGTTAATACCCCAC
CCTCTAAAATTGGACCACACCCTTTGGCACCTACCCCGTCCTTAATCAAG
AAATTCCTCTGAACCACGCCTTTTCAGAAAAACCCCAATTTAAAATCAAC
TAAAACCAAACTAAGGACAACTTTAATTGAATTAAATAAAATCTTCACTC
TTTTTAAAACATACCCCACCTTTTCCCTCCTTAACTGTCCTTGCCCGAGA
AATCCCTGTAAACCCCACccttttcgacttttttgaaaaattgtttacCC
CGCCATCTACCTTAAGGGTGGGCGAAAAGTATGGTAACTTACTTACTGAT
TTGTCAGTAGTCATCTTTGTTTGGCCAAGCAAATAACAGCTACTACTTAA
AGAAGATTGTGCCATTTAGACCCTTCTCTATGACCGATGCAATGGATACA
TGAACCATATTTAAAGCTTTTCATTTGCTATGttcattcgctttaagtgt
gctCTCTTCTTTCTTACTATgtagaaaccactctcaagggaatAAGCCTA
ATAACCCTGATatggtttccgcattacagtaAATAAAGCGAATTTACGTT
AGTTTCATCTTCCTAAAAGTTCCTATTTTGTGCCGACTTAATTGAATTAA
AAACTCCTTTTTTAGGAAACGCACAAAAGTTTTTCGTCAGTAGCGGCACC
ATCACCGTCAACAGCGACTCCAGTGCACAAATCTTGGCTGAAGAAGCCCA
ACCCATCGAAAACTTTGACGCTGATGCCGCCCGACGAACCGCCGATGCCG
CGCGGACTGCTTTGGCCAGTGCAGCGGACGAAGCTGGTAAAGCCGAAGCA
CAAATTCAACTAGATACTTGTGAAGCTTTACTAAACGCTTTAGAAGGAAA
ATAAATAAGGTATGTGCTGCCTTTCTatctttttttgtaattttctctcT
GTTCAAATTGTGTTTTTAGACCTTCCGTTgccatccacatagtacgtacg
gggtcttctcaaaagcgtatgcttgcgtacagggtgCGGGGAGGgctcaa
aggaaaatgtacgtacgcagagaaaattttcatagccctttttcgcttgt
ttttttttgtcgacttttacgcttcttatacgcatcaaggaaaagaaaaa
agtttctttataaacattgagtttcatgtatgaaataaaggtccgaacca
aacgatttgaattcgaaattttctttaacCGAGGGGAggggggtgaatga
aaaagtatgTACTTACTAGGGGGGTAtggccatttgcgtacgcttacGTA
CAAGGGGGACGGGGTACGTACTATGTGAACGGCCCCTATTATCAAAGCAG
TCGTCAAAGAACAAAATTACTAAGGAGAAGATGGGACTGACAAGACTGAA
ACCTCTCTCCAGAAAAAGGGTATAACATATTTCATCTCTGCTCTGTCTAT
TTTTTTCAGCAGCAATGAATGATCCTTGGTGGAATGTTCTagtttaaaat
ataaattttaatttgttttttgaaaaaaaaaatacaaaagcataatatca
aaatcaaac

Coding sequence (CDS) from alignment at scaffold_286:126830..142238+

>TCONS_00057172 ID=TCONS_00057172|Name=TCONS_00057172|organism=Clytia hemisphaerica|type=CDS|length=1503bp|location=Sequence derived from alignment at scaffold_286:126830..142238+ (Clytia hemisphaerica)
ATGGCACTTTCATTCTCACGAAGACTTTTAAAAGTTAACAATCTCCGTGC
CATCCAAACTGTTGTACAATCTAGAAACTATGCTGAAGCATCTGGATCTG
CTTTAAACCTTACTTTTGGCACTCCAACACAGGCTTACTTCAATGAAGAA
CCAGTCACGCAAGTCGATGTTCCATCAGGTTCCGGCAACTTCAGTATCTT
AGCCCAACACGTGCCAATCATTGCTGCCCTTCGACCTGGTCTTATGACTG
TTTTCAGTGAAGGAAACGCACAAAAGTTTTTCGTCAGTAGCGGCACCATC
ACCGTCAACAGCGACTCCAGTGCACAAATCTTGGCTGAAGAAGCCCAACC
CATCGAAAACTTTGACGCTGATGCCGCCCGACGAACCGCCGATGCCGCGC
GGACTGCTTTGGCCAGTGCAGCGGACGAAGCTGGTAAAGCCGAAGCACAA
ATTCAACTAGATACTTGTGAAGCTTTACTAAACGCTTTAGAAGGAAAATA
AATGGCACTTTCATTCTCACGAAGACTTTTAAAAGTTAACAATCTCCGTG
CCATCCAAACTGTTGTACAATCTAGAAACTATGCTGAAGCATCTGGATCT
GCTTTAAACCTTACTTTTGGCACTCCAACACAGGCTTACTTCAATGAAGA
ACCAGTCACGCAAGTCGATGTTCCATCAGGTTCCGGCAACTTCAGTATCT
TAGCCCAACACGTGCCAATCATTGCTGCCCTTCGACCTGGTCTTATGACT
GTTTTCAGTGAAGGAAACGCACAAAAGTTTTTCGTCAGTAGCGGCACCAT
CACCGTCAACAGCGACTCCAGTGCACAAATCTTGGCTGAAGAAGCCCAAC
CCATCGAAAACTTTGACGCTGATGCCGCCCGACGAACCGCCGATGCCGCG
CGGACTGCTTTGGCCAGTGCAGCGGACGAAGCTGGTAAAGCCGAAGCACA
AATTCAACTAGATACTTGTGAAGCTTTACTAAACGCTTTAGAAGGAAAAT
AAATGGCACTTTCATTCTCACGAAGACTTTTAAAAGTTAACAATCTCCGT
GCCATCCAAACTGTTGTACAATCTAGAAACTATGCTGAAGCATCTGGATC
TGCTTTAAACCTTACTTTTGGCACTCCAACACAGGCTTACTTCAATGAAG
AACCAGTCACGCAAGTCGATGTTCCATCAGGTTCCGGCAACTTCAGTATC
TTAGCCCAACACGTGCCAATCATTGCTGCCCTTCGACCTGGTCTTATGAC
TGTTTTCAGTGAAGGAAACGCACAAAAGTTTTTCGTCAGTAGCGGCACCA
TCACCGTCAACAGCGACTCCAGTGCACAAATCTTGGCTGAAGAAGCCCAA
CCCATCGAAAACTTTGACGCTGATGCCGCCCGACGAACCGCCGATGCCGC
GCGGACTGCTTTGGCCAGTGCAGCGGACGAAGCTGGTAAAGCCGAAGCAC
AAATTCAACTAGATACTTGTGAAGCTTTACTAAACGCTTTAGAAGGAAAA
TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036029XLOC_036029Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057172-proteinTCONS_00057172-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057172-exon-scaffold_286-1491911889:126830..127154TCONS_00057172-exon-scaffold_286-1491911889:126830..127154Clytia hemisphaericaexon
TCONS_00057172-exon-scaffold_286-1510915933:126830..127154TCONS_00057172-exon-scaffold_286-1510915933:126830..127154Clytia hemisphaericaexon
TCONS_00057172-exon-scaffold_286-1575043694:126830..127154TCONS_00057172-exon-scaffold_286-1575043694:126830..127154Clytia hemisphaericaexon
TCONS_00057172-exon-scaffold_286-1491911889:140539..140668TCONS_00057172-exon-scaffold_286-1491911889:140539..140668Clytia hemisphaericaexon
TCONS_00057172-exon-scaffold_286-1510915933:140539..140668TCONS_00057172-exon-scaffold_286-1510915933:140539..140668Clytia hemisphaericaexon
TCONS_00057172-exon-scaffold_286-1575043694:140539..140668TCONS_00057172-exon-scaffold_286-1575043694:140539..140668Clytia hemisphaericaexon
TCONS_00057172-exon-scaffold_286-1491911889:141345..141588TCONS_00057172-exon-scaffold_286-1491911889:141345..141588Clytia hemisphaericaexon
TCONS_00057172-exon-scaffold_286-1510915933:141345..141588TCONS_00057172-exon-scaffold_286-1510915933:141345..141588Clytia hemisphaericaexon
TCONS_00057172-exon-scaffold_286-1575043694:141345..141588TCONS_00057172-exon-scaffold_286-1575043694:141345..141588Clytia hemisphaericaexon
TCONS_00057172-exon-scaffold_286-1491911889:142142..142238TCONS_00057172-exon-scaffold_286-1491911889:142142..142238Clytia hemisphaericaexon
TCONS_00057172-exon-scaffold_286-1510915933:142142..142238TCONS_00057172-exon-scaffold_286-1510915933:142142..142238Clytia hemisphaericaexon
TCONS_00057172-exon-scaffold_286-1575043694:142142..142238TCONS_00057172-exon-scaffold_286-1575043694:142142..142238Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_286supercontigscaffold_286:126830..142238 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
171.464	198.956	176.364	207.722	110.626	112.8	147.322	165.234	245.897	208.117	309.876	330.308	270.007	287.966	194.122	178.9	273.553	306.531	106.951	139.446	250.092	300.746	190.981	154.854	315	304.728	163.705	207.878	127.437	110.095
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020546ATP_synth_F1_dsu/esu_N
IPR001469ATP_synth_F1_dsu/esu
IPR020547ATP_synth_F1_dsu/esu_C
Vocabulary: Biological Process
TermDefinition
GO:0015986ATP synthesis coupled proton transport
Vocabulary: Molecular Function
TermDefinition
GO:0046933proton-transporting ATP synthase activity, rotational mechanism
Vocabulary: Cellular Component
TermDefinition
GO:0045261proton-transporting ATP synthase complex, catalytic core F(1)
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015986 ATP synthesis coupled proton transport
cellular_component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
Blast
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BLAST of TCONS_00057172 vs. Swiss-Prot (Human)
Match: ATPD (ATP synthase subunit delta, mitochondrial OS=Homo sapiens GN=ATP5D PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 1.105e-25
Identity = 66/131 (50.38%), Postives = 89/131 (67.94%), Query Frame = 2 
Query:  296 LNLTFGTPTQAYFNEEPVTQVDVPSGSGNFSILAQHVPIIAALRPGLMTVFSE-GNAQKFFVSSGTITVNSDSSAQILAEEAQPIENFXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIQLDTCEALLNALE 685
            ++ TF +PTQ +FN   V QVDVP+ +G F ILA HVP +  LRPGL+ V +E G   K+FVSSG+I VN+DSS Q+LAEEA  ++  D  AA+   + A+  L   ADEA +AE QI+++  EAL+ ALE
Sbjct:   38 MSFTFASPTQVFFNGANVRQVDVPTLTGAFGILAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSIAVNADSSVQLLAEEAVTLDMLDLGAAKANLEKAQAELVGTADEATRAEIQIRIEANEALVKALE 168
The following BLAST results are available for this feature:
BLAST of TCONS_00057172 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ATPD1.105e-2550.38ATP synthase subunit delta, mitochondrial OS=Homo ... [more]
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