TCONS_00057157 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057157
Unique NameTCONS_00057157
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length674

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057157 ID=TCONS_00057157|Name=TCONS_00057157|organism=Clytia hemisphaerica|type=transcript|length=674bp
CATAATTATTCAGTTATACTTAGCGTAGGTAATTTCATCTTTAGCctaat
attaaaaataaaattgtgtaCAAGTAAAGAAatgcagttgacgctctcta
attcgattttcaagagaaaatggattttcatcgaatacgaGAGGGTATCG
AATAGTGGGAAGTCTCCCTAATTCGATAACCACGAGGTAAATATCGAATT
ATAGACCTGGGGGAGAAAAATATAGGAGAGACTCAAATGGTTTGAATCAG
GACAAATATCGAAGTTCTTGCTGAAAACCTAAGTTCTTTGGAAgaaatct
tcgttttttttttcgttttgagNGTAGATATCGAATTATAGACCTGGGGG
AGAAAAATATAGGAGAGACTCAAATGGTTTGAATCAGGACAAATATCGAA
GTTCTTGCTGAAAACCTAAGTTCTTTTGAAGAAATCTTCGATAtttgtct
gttttttttttcgttttgaggaatcgaatttcaaaattctaattcgaacg
ccaaaatttgaaagttctaAGATTGAACTCCGTCCTAAAGGCCTTTTAAC
ACGCtagaaatcgaataagagagcgaaaAATCTTCAAGGGACTTCAAATT
TCCATCGGAAaggggagcttatcgaataatagaacgtcgaattagagagc
gtcaactgtatacaCAAATAGGAA
Run BLAST on NCBI

transcript from alignment at scaffold_285:543417..544090

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057157 ID=TCONS_00057157|Name=TCONS_00057157|organism=Clytia hemisphaerica|type=transcript|length=674bp|location=Sequence derived from alignment at scaffold_285:543417..544090 (Clytia hemisphaerica)
TTCCTATTTGtgtatacagttgacgctctctaattcgacgttctattatt
cgataagctcccctTTCCGATGGAAATTTGAAGTCCCTTGAAGATTtttc
gctctcttattcgatttctaGCGTGTTAAAAGGCCTTTAGGACGGAGTTC
AATCTtagaactttcaaattttggcgttcgaattagaattttgaaattcg
attcctcaaaacgaaaaaaaaaacagacaaaTATCGAAGATTTCTTCAAA
AGAACTTAGGTTTTCAGCAAGAACTTCGATATTTGTCCTGATTCAAACCA
TTTGAGTCTCTCCTATATTTTTCTCCCCCAGGTCTATAATTCGATATCTA
CNctcaaaacgaaaaaaaaaacgaagatttcTTCCAAAGAACTTAGGTTT
TCAGCAAGAACTTCGATATTTGTCCTGATTCAAACCATTTGAGTCTCTCC
TATATTTTTCTCCCCCAGGTCTATAATTCGATATTTACCTCGTGGTTATC
GAATTAGGGAGACTTCCCACTATTCGATACCCTCtcgtattcgatgaaaa
tccattttctcttgaaaatcgaattagagagcgtcaactgcatTTCTTTA
CTTGtacacaattttatttttaatattagGCTAAAGATGAAATTACCTAC
GCTAAGTATAACTGAATAATTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036016XLOC_036016Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057157-exon-scaffold_285-1491911889:543417..544090TCONS_00057157-exon-scaffold_285-1491911889:543417..544090Clytia hemisphaericaexon
TCONS_00057157-exon-scaffold_285-1510915933:543417..544090TCONS_00057157-exon-scaffold_285-1510915933:543417..544090Clytia hemisphaericaexon
TCONS_00057157-exon-scaffold_285-1575043694:543417..544090TCONS_00057157-exon-scaffold_285-1575043694:543417..544090Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:543417..544090 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.169439	0	2.29518	0.781703	2.58761	1.69208	0.572664	0.320547	0	0.160842	0.287776	0	0	0	0.171826	0.194199	0	0.314333	0.445156	0.1382	0.291787	0.46595	0.108321	0.358607	0.905821	1.04457	0	0.172557
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057157 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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