TCONS_00057154 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057154
Unique NameTCONS_00057154
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length513

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057154 ID=TCONS_00057154|Name=TCONS_00057154|organism=Clytia hemisphaerica|type=transcript|length=513bp
GTTCcagcaatttttctttttcaggtgcACCCAAACCCACTTGCGGTGCA
TCTGAGGGCCTTGTCACCAGTTCGACACCCAActccaatgtttttttttc
agttgcaCCCGAACCCACTTGTGGTGCATCTGAGGGCCTTGTCACCAGTT
CGACACCCAActccaatgtttttttttcagttgcaCCCGAACCCACTTGT
GGTGCATCTGAGGGCCTTGTCGCCAGTTTGACAACCAATGCCaccaatgt
tttttcttcaggTGCACCAAAACCCACTTGTGGTGCATCTGAGGGCCTTG
TCGCCAGTTCGACACCGAACTCCAATGTGTTTTTTTCAGTTGCACCCGAA
CCCACTTGCGGTGCATCTGAGGGCCTTGTCGCCAGTTTGACAACCAATTC
CaccaatgttttttcttcaggTGCACCCAAACCCACTTGTGGTGTATCTG
AAAGCTTTGTTGCAAGTCCGACTCGTATTTCCTTTTCAGATCAGTTTTAC
ATTAGAGAAAAGC
Run BLAST on NCBI

protein sequence of TCONS_00057154-protein

>TCONS_00057154-protein ID=TCONS_00057154-protein|Name=TCONS_00057154-protein|organism=Clytia hemisphaerica|type=polypeptide|length=170bp
SSNFSFSGAPKPTCGASEGLVTSSTPNSNVFFSVAPEPTCGASEGLVTSS
TPNSNVFFSVAPEPTCGASEGLVASLTTNATNVFSSGAPKPTCGASEGLV
ASSTPNSNVFFSVAPEPTCGASEGLVASLTTNSTNVFSSGAPKPTCGVSE
SFVASPTRISFSDQFYIREK
Run BLAST on NCBI

transcript from alignment at scaffold_285:527938..528450

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057154 ID=TCONS_00057154|Name=TCONS_00057154|organism=Clytia hemisphaerica|type=transcript|length=513bp|location=Sequence derived from alignment at scaffold_285:527938..528450 (Clytia hemisphaerica)
GCTTTTCTCTAATGTAAAACTGATCTGAAAAGGAAATACGAGTCGGACTT
GCAACAAAGCTTTCAGATACACCACAAGTGGGTTTGGGTGCAcctgaaga
aaaaacattggtGGAATTGGTTGTCAAACTGGCGACAAGGCCCTCAGATG
CACCGCAAGTGGGTTCGGGTGCAACTGAAAAAAACACATTGGAGTTCGGT
GTCGAACTGGCGACAAGGCCCTCAGATGCACCACAAGTGGGTTTTGGTGC
AcctgaagaaaaaacattggtGGCATTGGTTGTCAAACTGGCGACAAGGC
CCTCAGATGCACCACAAGTGGGTTCGGGtgcaactgaaaaaaaaacattg
gagTTGGGTGTCGAACTGGTGACAAGGCCCTCAGATGCACCACAAGTGGG
TTCGGGtgcaactgaaaaaaaaacattggagTTGGGTGTCGAACTGGTGA
CAAGGCCCTCAGATGCACCGCAAGTGGGTTTGGGTgcacctgaaaaagaa
aaattgctgGAAC

Coding sequence (CDS) from alignment at scaffold_285:527938..528450

>TCONS_00057154 ID=TCONS_00057154|Name=TCONS_00057154|organism=Clytia hemisphaerica|type=CDS|length=510bp|location=Sequence derived from alignment at scaffold_285:527938..528450 (Clytia hemisphaerica)
CTTTTCTCTAATGTAAAACTGATCTGAAAAGGAAATACGAGTCGGACTTG
CAACAAAGCTTTCAGATACACCACAAGTGGGTTTGGGTGCAcctgaagaa
aaaacattggtGGAATTGGTTGTCAAACTGGCGACAAGGCCCTCAGATGC
ACCGCAAGTGGGTTCGGGTGCAACTGAAAAAAACACATTGGAGTTCGGTG
TCGAACTGGCGACAAGGCCCTCAGATGCACCACAAGTGGGTTTTGGTGCA
cctgaagaaaaaacattggtGGCATTGGTTGTCAAACTGGCGACAAGGCC
CTCAGATGCACCACAAGTGGGTTCGGGtgcaactgaaaaaaaaacattgg
agTTGGGTGTCGAACTGGTGACAAGGCCCTCAGATGCACCACAAGTGGGT
TCGGGtgcaactgaaaaaaaaacattggagTTGGGTGTCGAACTGGTGAC
AAGGCCCTCAGATGCACCGCAAGTGGGTTTGGGTgcacctgaaaaagaaa
aattgctgGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036013XLOC_036013Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057154-proteinTCONS_00057154-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057154-exon-scaffold_285-1491911889:527938..528450TCONS_00057154-exon-scaffold_285-1491911889:527938..528450Clytia hemisphaericaexon
TCONS_00057154-exon-scaffold_285-1510915933:527938..528450TCONS_00057154-exon-scaffold_285-1510915933:527938..528450Clytia hemisphaericaexon
TCONS_00057154-exon-scaffold_285-1575043694:527938..528450TCONS_00057154-exon-scaffold_285-1575043694:527938..528450Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:527938..528450 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.583516	0.56902	0.792823	1.42203	0	0	0	0	0	0.365443	0	0.233171	0.388078	0.0806045	0.397607	0.64004	0.788477	0.628572	0.124058	0.259635	0.564176	0.165111	0.267619	0.243304	0.626495	0.559132	0.480069	0.170781	0.129531	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057154 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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