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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057149 ID=TCONS_00057149|Name=TCONS_00057149|organism=Clytia hemisphaerica|type=transcript|length=1903bp
CCGCTTTCGGGACTTAACTAGAGATATGTGTACTGACCTTCCTGATTTCA
CCGATATCAACACGTGCTATTCTGCATTTCAAAAGAAACTCTCCAAAATT
GCCAAGCGCTCGATTCCACGCGGCTTTAGGAAAAATTACATACCTGAATG
GGATGACACTTGCGAAAATCTATCGTCCCAGCTCGAGGAGGCAAATTCAT
TAGAAGACAAAACATCTCTATCAAACCAACTGATTGATCATCTTGACACA
AACCGCAGACAACGCTGGATAACAACCGTCGAAAACGTTGATATGAAGTC
TTCGAGTCGTAGAGCGTGGTCAACTCTCAACAAGCTTACGGGAAGGAAGA
ACGTATTGCCCAACCCTAACTCGATGAATCCGAACTCTGTGGCGTCTTGC
TTACTCTCCAATGGCAAGTTCAAAAATCCGAACAAAGAGTTCACCAGAGA
CATTAATCGCCAACTGAAAGAAGCTTGGTGCTCTCCCTCTGTTGATCAAA
ACCTGTGTAGTGAGTTTTCTACCGATGAGATGTTCTCAGCCATCAAAACT
CTTAAGGCTTGGAAGGCTCCTGGTGTCGACAATTTACATCCCGAATTTTT
CCTCCACATGGATGATACGTGTCTTGACTGGTTACGCCAATTCTTCAACC
ACTGCTTGAAAACGATATCCGTCCCCAAAATATGGAAACTTTCTAAAGTC
GTCGCCGTATTAAAGCCAAAGAAGCCACCTGATAATCCAAGCAGCTACAG
ACCCGTAAGTCTTCTTTGCATCCCTCTGAAACTCTATGAACGCTTGATTT
ATAATAGAATTCAACCAATCACTGAATCTTTTCTTCCTAACAAACAAGCT
GGCTTCCGTCCAGGTCGATCATGCCTTGACCAAGTTGCTCTGCTTACTGA
GGACATAGAACATGCATTCGATCAGAAGCTCAAGGCCGGTATTGTGCTCG
TGGATCTCTCTGCAGCATATGATACAGTTTGGCATCGCGGTCTGACACTT
AAACTGTTAAAAACGATTCCTAGCCGTCAGATAGTTTGTGCCATCATGTC
AATGATATCACAGCGTCGCTTCCACGTCCATATTGGTGGAAAGAAGTCCC
GCTGTCGCACCCTTATCAATGGTGTTCAACAAGGGTCTGTAATCACTCCA
TTACTCTTCACTATCTATACACATGAATTACCACCTACCGTTAGCAAGAA
GTATGTGTATGCAGACGACCTTGCTTTGAAATCCACCCACAAAGATTTCC
CAGAGATTGAAGAGGACCTTTCCAAGGATGTTGACTCCTTAAGGACATAT
TTCACAAATTGGAGACTCAAATTGAACACTGGTAAAACTGTCTCGAGTGT
GTTTCATCTCGCCAACCGGAAAGCCAATTACGAACTTAACGTGACGACGA
ATGGTGAGTAATTACGCTTTGAAAGAAACCCAGTCTACCTTGGTGTTACG
CTAGATTGTACCCTTTCTTTCAACCAACACCTTACAAACGCCTCCTCCAA
ggttacaaaacgttgtaatcTTCTTAGAAGACTCGCTGGTAATCGCTGGG
GCGCGGACTTCACTACCCTCCATACAACCGCTCTAGCTCTCTGCTACTCC
ACAGCAGAATACTGTTCTCCTATTTGGAGCCACAGCCCTCACTGTAACAA
GATTGACGTTTCTTTGAACAGCTGCATGCGAGTGATAAGCGGCTGCATCA
TATCGACCCCCACTGAAATTCTACCTGTGCTCTGCGGAATTGCTCCATCT
GACATCCGTAGGAAAAAAAACATGCTAGATCTCAGAAACCGTGCTCTTTC
CGACGACCACATGCTTGACATCGTCGCCAACAACCCGCTACTTAACGGCA
GTTTAAAAAGCAGATCTCCACTCTCAAGGAGGATGCACTCACTTGCTGCT
GAC Run BLAST on NCBI protein sequence of TCONS_00057149-protein >TCONS_00057149-protein ID=TCONS_00057149-protein|Name=TCONS_00057149-protein|organism=Clytia hemisphaerica|type=polypeptide|length=469bp
RFRDLTRDMCTDLPDFTDINTCYSAFQKKLSKIAKRSIPRGFRKNYIPEW
DDTCENLSSQLEEANSLEDKTSLSNQLIDHLDTNRRQRWITTVENVDMKS
SSRRAWSTLNKLTGRKNVLPNPNSMNPNSVASCLLSNGKFKNPNKEFTRD
INRQLKEAWCSPSVDQNLCSEFSTDEMFSAIKTLKAWKAPGVDNLHPEFF
LHMDDTCLDWLRQFFNHCLKTISVPKIWKLSKVVAVLKPKKPPDNPSSYR
PVSLLCIPLKLYERLIYNRIQPITESFLPNKQAGFRPGRSCLDQVALLTE
DIEHAFDQKLKAGIVLVDLSAAYDTVWHRGLTLKLLKTIPSRQIVCAIMS
MISQRRFHVHIGGKKSRCRTLINGVQQGSVITPLLFTIYTHELPPTVSKK
YVYADDLALKSTHKDFPEIEEDLSKDVDSLRTYFTNWRLKLNTGKTVSSV
FHLANRKANYELNVTTNGE Run BLAST on NCBI transcript from alignment at scaffold_285:439014..440916 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057149 ID=TCONS_00057149|Name=TCONS_00057149|organism=Clytia hemisphaerica|type=transcript|length=1903bp|location=Sequence derived from alignment at scaffold_285:439014..440916 (Clytia hemisphaerica)
GTCAGCAGCAAGTGAGTGCATCCTCCTTGAGAGTGGAGATCTGCTTTTTA
AACTGCCGTTAAGTAGCGGGTTGTTGGCGACGATGTCAAGCATGTGGTCG
TCGGAAAGAGCACGGTTTCTGAGATCTAGCATGTTTTTTTTCCTACGGAT
GTCAGATGGAGCAATTCCGCAGAGCACAGGTAGAATTTCAGTGGGGGTCG
ATATGATGCAGCCGCTTATCACTCGCATGCAGCTGTTCAAAGAAACGTCA
ATCTTGTTACAGTGAGGGCTGTGGCTCCAAATAGGAGAACAGTATTCTGC
TGTGGAGTAGCAGAGAGCTAGAGCGGTTGTATGGAGGGTAGTGAAGTCCG
CGCCCCAGCGATTACCAGCGAGTCTTCTAAGAAgattacaacgttttgta
accTTGGAGGAGGCGTTTGTAAGGTGTTGGTTGAAAGAAAGGGTACAATC
TAGCGTAACACCAAGGTAGACTGGGTTTCTTTCAAAGCGTAATTACTCAC
CATTCGTCGTCACGTTAAGTTCGTAATTGGCTTTCCGGTTGGCGAGATGA
AACACACTCGAGACAGTTTTACCAGTGTTCAATTTGAGTCTCCAATTTGT
GAAATATGTCCTTAAGGAGTCAACATCCTTGGAAAGGTCCTCTTCAATCT
CTGGGAAATCTTTGTGGGTGGATTTCAAAGCAAGGTCGTCTGCATACACA
TACTTCTTGCTAACGGTAGGTGGTAATTCATGTGTATAGATAGTGAAGAG
TAATGGAGTGATTACAGACCCTTGTTGAACACCATTGATAAGGGTGCGAC
AGCGGGACTTCTTTCCACCAATATGGACGTGGAAGCGACGCTGTGATATC
ATTGACATGATGGCACAAACTATCTGACGGCTAGGAATCGTTTTTAACAG
TTTAAGTGTCAGACCGCGATGCCAAACTGTATCATATGCTGCAGAGAGAT
CCACGAGCACAATACCGGCCTTGAGCTTCTGATCGAATGCATGTTCTATG
TCCTCAGTAAGCAGAGCAACTTGGTCAAGGCATGATCGACCTGGACGGAA
GCCAGCTTGTTTGTTAGGAAGAAAAGATTCAGTGATTGGTTGAATTCTAT
TATAAATCAAGCGTTCATAGAGTTTCAGAGGGATGCAAAGAAGACTTACG
GGTCTGTAGCTGCTTGGATTATCAGGTGGCTTCTTTGGCTTTAATACGGC
GACGACTTTAGAAAGTTTCCATATTTTGGGGACGGATATCGTTTTCAAGC
AGTGGTTGAAGAATTGGCGTAACCAGTCAAGACACGTATCATCCATGTGG
AGGAAAAATTCGGGATGTAAATTGTCGACACCAGGAGCCTTCCAAGCCTT
AAGAGTTTTGATGGCTGAGAACATCTCATCGGTAGAAAACTCACTACACA
GGTTTTGATCAACAGAGGGAGAGCACCAAGCTTCTTTCAGTTGGCGATTA
ATGTCTCTGGTGAACTCTTTGTTCGGATTTTTGAACTTGCCATTGGAGAG
TAAGCAAGACGCCACAGAGTTCGGATTCATCGAGTTAGGGTTGGGCAATA
CGTTCTTCCTTCCCGTAAGCTTGTTGAGAGTTGACCACGCTCTACGACTC
GAAGACTTCATATCAACGTTTTCGACGGTTGTTATCCAGCGTTGTCTGCG
GTTTGTGTCAAGATGATCAATCAGTTGGTTTGATAGAGATGTTTTGTCTT
CTAATGAATTTGCCTCCTCGAGCTGGGACGATAGATTTTCGCAAGTGTCA
TCCCATTCAGGTATGTAATTTTTCCTAAAGCCGCGTGGAATCGAGCGCTT
GGCAATTTTGGAGAGTTTCTTTTGAAATGCAGAATAGCACGTGTTGATAT
CGGTGAAATCAGGAAGGTCAGTACACATATCTCTAGTTAAGTCCCGAAAG
CGG Coding sequence (CDS) from alignment at scaffold_285:439014..440916 >TCONS_00057149 ID=TCONS_00057149|Name=TCONS_00057149|organism=Clytia hemisphaerica|type=CDS|length=1410bp|location=Sequence derived from alignment at scaffold_285:439014..440916 (Clytia hemisphaerica)
TTACTCACCATTCGTCGTCACGTTAAGTTCGTAATTGGCTTTCCGGTTGG
CGAGATGAAACACACTCGAGACAGTTTTACCAGTGTTCAATTTGAGTCTC
CAATTTGTGAAATATGTCCTTAAGGAGTCAACATCCTTGGAAAGGTCCTC
TTCAATCTCTGGGAAATCTTTGTGGGTGGATTTCAAAGCAAGGTCGTCTG
CATACACATACTTCTTGCTAACGGTAGGTGGTAATTCATGTGTATAGATA
GTGAAGAGTAATGGAGTGATTACAGACCCTTGTTGAACACCATTGATAAG
GGTGCGACAGCGGGACTTCTTTCCACCAATATGGACGTGGAAGCGACGCT
GTGATATCATTGACATGATGGCACAAACTATCTGACGGCTAGGAATCGTT
TTTAACAGTTTAAGTGTCAGACCGCGATGCCAAACTGTATCATATGCTGC
AGAGAGATCCACGAGCACAATACCGGCCTTGAGCTTCTGATCGAATGCAT
GTTCTATGTCCTCAGTAAGCAGAGCAACTTGGTCAAGGCATGATCGACCT
GGACGGAAGCCAGCTTGTTTGTTAGGAAGAAAAGATTCAGTGATTGGTTG
AATTCTATTATAAATCAAGCGTTCATAGAGTTTCAGAGGGATGCAAAGAA
GACTTACGGGTCTGTAGCTGCTTGGATTATCAGGTGGCTTCTTTGGCTTT
AATACGGCGACGACTTTAGAAAGTTTCCATATTTTGGGGACGGATATCGT
TTTCAAGCAGTGGTTGAAGAATTGGCGTAACCAGTCAAGACACGTATCAT
CCATGTGGAGGAAAAATTCGGGATGTAAATTGTCGACACCAGGAGCCTTC
CAAGCCTTAAGAGTTTTGATGGCTGAGAACATCTCATCGGTAGAAAACTC
ACTACACAGGTTTTGATCAACAGAGGGAGAGCACCAAGCTTCTTTCAGTT
GGCGATTAATGTCTCTGGTGAACTCTTTGTTCGGATTTTTGAACTTGCCA
TTGGAGAGTAAGCAAGACGCCACAGAGTTCGGATTCATCGAGTTAGGGTT
GGGCAATACGTTCTTCCTTCCCGTAAGCTTGTTGAGAGTTGACCACGCTC
TACGACTCGAAGACTTCATATCAACGTTTTCGACGGTTGTTATCCAGCGT
TGTCTGCGGTTTGTGTCAAGATGATCAATCAGTTGGTTTGATAGAGATGT
TTTGTCTTCTAATGAATTTGCCTCCTCGAGCTGGGACGATAGATTTTCGC
AAGTGTCATCCCATTCAGGTATGTAATTTTTCCTAAAGCCGCGTGGAATC
GAGCGCTTGGCAATTTTGGAGAGTTTCTTTTGAAATGCAGAATAGCACGT
GTTGATATCGGTGAAATCAGGAAGGTCAGTACACATATCTCTAGTTAAGT
CCCGAAAGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00057149-exon-scaffold_285-1491911889:439014..440916 | TCONS_00057149-exon-scaffold_285-1491911889:439014..440916 | Clytia hemisphaerica | exon |
| TCONS_00057149-exon-scaffold_285-1510915933:439014..440916 | TCONS_00057149-exon-scaffold_285-1510915933:439014..440916 | Clytia hemisphaerica | exon |
| TCONS_00057149-exon-scaffold_285-1575043694:439014..440916 | TCONS_00057149-exon-scaffold_285-1575043694:439014..440916 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_285 | supercontig | scaffold_285:439014..440916 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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