TCONS_00057144 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057144
Unique NameTCONS_00057144
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length224

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057144 ID=TCONS_00057144|Name=TCONS_00057144|organism=Clytia hemisphaerica|type=transcript|length=224bp
ATCACTGACATGAGTTTTTGATACATCAATATTAAAATAAACGGAAAAGG
TGTATTCGATTCTGAGATGGATGGGTCTCTGTATACAGACGGTAAAGTTG
CAACACTACCAGTATCTCAATCCCCTCCAGTATGCAAACTCATCCATAAT
CATCTTCACCGGAGCTCGAAGATTCACCGTAGGAAACTAACGAAGAAATA
GAAGAGTCAGTCTTCAAAACATAT
Run BLAST on NCBI

transcript from alignment at scaffold_285:358743..358966

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057144 ID=TCONS_00057144|Name=TCONS_00057144|organism=Clytia hemisphaerica|type=transcript|length=224bp|location=Sequence derived from alignment at scaffold_285:358743..358966 (Clytia hemisphaerica)
ATATGTTTTGAAGACTGACTCTTCTATTTCTTCGTTAGTTTCCTACGGTG
AATCTTCGAGCTCCGGTGAAGATGATTATGGATGAGTTTGCATACTGGAG
GGGATTGAGATACTGGTAGTGTTGCAACTTTACCGTCTGTATACAGAGAC
CCATCCATCTCAGAATCGAATACACCTTTTCCGTTTATTTTAATATTGAT
GTATCAAAAACTCATGTCAGTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036003XLOC_036003Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057144-exon-scaffold_285-1491911889:358743..358966TCONS_00057144-exon-scaffold_285-1491911889:358743..358966Clytia hemisphaericaexon
TCONS_00057144-exon-scaffold_285-1510915933:358743..358966TCONS_00057144-exon-scaffold_285-1510915933:358743..358966Clytia hemisphaericaexon
TCONS_00057144-exon-scaffold_285-1575043694:358743..358966TCONS_00057144-exon-scaffold_285-1575043694:358743..358966Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:358743..358966 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.48582	3.39922	1.31561	2.57423	18.8033	17.335	13.4447	9.78971	11.7497	18.1924	4.7088	13.1554	19.3192	16.0506	8.57724	10.6208	10.4672	12.5166	19.7627	6.46257	0	6.57563	7.99354	7.26729	8.73266	11.1338	0	5.10107	0	5.25584
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057144 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top