TCONS_00057142 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057142
Unique NameTCONS_00057142
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length660

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057142 ID=TCONS_00057142|Name=TCONS_00057142|organism=Clytia hemisphaerica|type=transcript|length=660bp
ACGTCGAAAACATCGAGAACCCTTGTATAAAAATCCCAAAGCAAATTATT
GGAGCTCAAACCATCAATGAAACCGTAACAGGGGCTTCTTGTATTAAACT
CCCAAAGCAAATTGATGAAAATCTAGCCAAACGTGATAACTTTGAGAAAT
CTTGTACAAGACTTCCAAAGCAAGATATTGAAACCGAGGTCAACAATGAA
ACTGTTGCTCAAAGTGACGACACTGATGCTTGCTGTCTAAATCTTTCAAC
TCAGATTAAAGAAATTGAAGTCAAAGTTAAAACTCGTGCGAATGATGACA
CTGAAAATTCATTCATACAACTCCaaaagcaaaatattgaaaatggcATC
GAGGCTAAAACTCCTATGAATGATAGCACTTGTATAAGACTTCCAAAGCA
AAATATTGGAACTATAGTCACCAATGAAAATGTAGATAATAATCAGGCCT
CTAGTATAACATTTCCAAAGCAAATTAACGAAACAAAAGTCAAAGATGTC
ACCTGTGAAGAGATCGTTGGCACTGAGACATGCTGTAAATTTCCAACGCA
AGATGACCAACGCGGAGATGAGCGAACAAGAAAACTCGATAACAGAATAA
CCAATAAGGAAGAGATAATCGATGCTCAGGGTTagtaatatctttaaaat
tatcttttag
Run BLAST on NCBI

protein sequence of TCONS_00057142-protein

>TCONS_00057142-protein ID=TCONS_00057142-protein|Name=TCONS_00057142-protein|organism=Clytia hemisphaerica|type=polypeptide|length=210bp
VENIENPCIKIPKQIIGAQTINETVTGASCIKLPKQIDENLAKRDNFEKS
CTRLPKQDIETEVNNETVAQSDDTDACCLNLSTQIKEIEVKVKTRANDDT
ENSFIQLQKQNIENGIEAKTPMNDSTCIRLPKQNIGTIVTNENVDNNQAS
SITFPKQINETKVKDVTCEEIVGTETCCKFPTQDDQRGDERTRKLDNRIT
NKEEIIDAQG
Run BLAST on NCBI

transcript from alignment at scaffold_285:294269..294928

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057142 ID=TCONS_00057142|Name=TCONS_00057142|organism=Clytia hemisphaerica|type=transcript|length=660bp|location=Sequence derived from alignment at scaffold_285:294269..294928 (Clytia hemisphaerica)
ctaaaagataattttaaagatattactAACCCTGAGCATCGATTATCTCT
TCCTTATTGGTTATTCTGTTATCGAGTTTTCTTGTTCGCTCATCTCCGCG
TTGGTCATCTTGCGTTGGAAATTTACAGCATGTCTCAGTGCCAACGATCT
CTTCACAGGTGACATCTTTGACTTTTGTTTCGTTAATTTGCTTTGGAAAT
GTTATACTAGAGGCCTGATTATTATCTACATTTTCATTGGTGACTATAGT
TCCAATATTTTGCTTTGGAAGTCTTATACAAGTGCTATCATTCATAGGAG
TTTTAGCCTCGATgccattttcaatattttgcttttGGAGTTGTATGAAT
GAATTTTCAGTGTCATCATTCGCACGAGTTTTAACTTTGACTTCAATTTC
TTTAATCTGAGTTGAAAGATTTAGACAGCAAGCATCAGTGTCGTCACTTT
GAGCAACAGTTTCATTGTTGACCTCGGTTTCAATATCTTGCTTTGGAAGT
CTTGTACAAGATTTCTCAAAGTTATCACGTTTGGCTAGATTTTCATCAAT
TTGCTTTGGGAGTTTAATACAAGAAGCCCCTGTTACGGTTTCATTGATGG
TTTGAGCTCCAATAATTTGCTTTGGGATTTTTATACAAGGGTTCTCGATG
TTTTCGACGT

Coding sequence (CDS) from alignment at scaffold_285:294269..294928

>TCONS_00057142 ID=TCONS_00057142|Name=TCONS_00057142|organism=Clytia hemisphaerica|type=CDS|length=633bp|location=Sequence derived from alignment at scaffold_285:294269..294928 (Clytia hemisphaerica)
ctAACCCTGAGCATCGATTATCTCTTCCTTATTGGTTATTCTGTTATCGA
GTTTTCTTGTTCGCTCATCTCCGCGTTGGTCATCTTGCGTTGGAAATTTA
CAGCATGTCTCAGTGCCAACGATCTCTTCACAGGTGACATCTTTGACTTT
TGTTTCGTTAATTTGCTTTGGAAATGTTATACTAGAGGCCTGATTATTAT
CTACATTTTCATTGGTGACTATAGTTCCAATATTTTGCTTTGGAAGTCTT
ATACAAGTGCTATCATTCATAGGAGTTTTAGCCTCGATgccattttcaat
attttgcttttGGAGTTGTATGAATGAATTTTCAGTGTCATCATTCGCAC
GAGTTTTAACTTTGACTTCAATTTCTTTAATCTGAGTTGAAAGATTTAGA
CAGCAAGCATCAGTGTCGTCACTTTGAGCAACAGTTTCATTGTTGACCTC
GGTTTCAATATCTTGCTTTGGAAGTCTTGTACAAGATTTCTCAAAGTTAT
CACGTTTGGCTAGATTTTCATCAATTTGCTTTGGGAGTTTAATACAAGAA
GCCCCTGTTACGGTTTCATTGATGGTTTGAGCTCCAATAATTTGCTTTGG
GATTTTTATACAAGGGTTCTCGATGTTTTCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_036001XLOC_036001Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057142-proteinTCONS_00057142-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057142-exon-scaffold_285-1491911889:294269..294928TCONS_00057142-exon-scaffold_285-1491911889:294269..294928Clytia hemisphaericaexon
TCONS_00057142-exon-scaffold_285-1510915933:294269..294928TCONS_00057142-exon-scaffold_285-1510915933:294269..294928Clytia hemisphaericaexon
TCONS_00057142-exon-scaffold_285-1575043694:294269..294928TCONS_00057142-exon-scaffold_285-1575043694:294269..294928Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:294269..294928 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.97851	5.9067	1.42509	1.13281	4.66768	4.10761	5.56247	5.11283	2.65157	2.46329	3.82549	2.40995	1.67416	2.01029	2.23342	2.3968	1.94876	2.179	1.83969	1.22506	1.52115	1.00165	7.84699	8.93807	3.96956	4.82415	1.29438	0.92093	6.46106	6.93862
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057142 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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