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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057126 ID=TCONS_00057126|Name=TCONS_00057126|organism=Clytia hemisphaerica|type=transcript|length=808bp
CTTTTTCATATACTGTATATTTACATATCTAATTTATTATCAGGCcagtt
aaaaatatttctaacaCTATCTGGttaaaataatttacttttGGGGAGta
ttattttcattgaaatatttttgcctcTTTTTCGCAACTCGAGCTCATAT
TATCGAACACATTTACATATTCAACATGGAAAGTGTGATGATTATCAAAC
GATGGAAGCttgcaattttcttatttttacgaCTAAGTAATTTTGGGAAG
TCAGAGAAATACAATTGCAGAAAAACCACCTTCTGGCTACCATAAAAACC
CTCTCTCCAGAATGGTCAATAACCTTGAACGTCCGTTTATATTCAGCTAT
CCCGTATGGGGATGGTATTGGTTGGTGTAGTATTATACTGATCACCAAGG
GTTCTGACAACAGTGAGTATGGTTACCGAACACCACTGGTGGAGTTGAAG
AAAACGGAAAAAACTCTACATTTCGCATCTGCTATTAACGGTACTTCATC
TGTTGCATACGATGTTGTCGATTCACCATTGCAAATCAACCAGAATTACC
ATATCCAAATTGACCAAAGATATGTTAGTGCAGGGAATTACCAATATTCC
GTACGTCTTGATGGTGTTGTAGTTTTTGAAACGTTGAATACAGACGCGAG
ACAGTTTTATGATATGAAAGTTTACGCGGGTAATCCTTGGCGGGATGCTT
GTCCTGTGATGATACGTAATCTTCATCTTACTAATTTTGTGTAATTTATA
TCCATAGCTGGACGATTTAATTATTACTTCTCACTCCATATTTTATCTTT
TGCACTTG Run BLAST on NCBI transcript from alignment at scaffold_285:551150..555996- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057126 ID=TCONS_00057126|Name=TCONS_00057126|organism=Clytia hemisphaerica|type=transcript|length=4847bp|location=Sequence derived from alignment at scaffold_285:551150..555996- (Clytia hemisphaerica)
CTTTTTCATATACTGTATATTTACATATCTAATTTATTATCAGGCCAGTT
AAAAATATTTCTAACACTATCTGGTTAAAATAATTTACTTTTGGGGAGTA
TTATTTTCATTGAAATATTTTTGCCTCTTTTTCGCAACTCGAGCTCATAT
TATCGAACACATTTACATATTCAACATGGAAAGTGTGATGATTATCAAAC
GATGGAAGCTTGCAATTTTCTTATTTTTACGACTAAGTAATTTTGGGAAG
TCAGAGGTGAGTTAACTCCCCATACCCCTTGAGGATACTATCGAATGTGA
TGCTCCGCTGAGCTTCAAAAAAAACCTATTCTTACAAACCTGGTAGAATC
TTTTCAGCCAGTGGGGGTTTAAATAAGGGATCAAAACACGATGGAGATTG
ATATCCTTATTTTTTTGTGGCTGGGATTTGAATTCCATTATTTTTATATG
CCAGACAATTCAGTTGGGATGGAAAAATGCACAATATTTTTCAGTAAGGA
TTTGCTTATCTTAGTTTCAGCGGGGACACAAATTTGAGTATGATTTCCAA
CTGGGACGATATTTTGACCAATTTTTCCAGTGGGTCTGTGAGACGGAGGT
GTAAAAATGAAACCTACGTCGAACTCATTTTTTTTTCGGAGATTTATTAC
CAAAATTTGCGAAGATTAGATTCTAAGATTTTAGATTTTTTCAATTTTTT
TTTCTCTTTGATAACGCATCCCCTGATTTCTGATGTGTCTTTGAAACCCT
ATTGGGACTGAGGTGGAAAAGGTACCCTGTCTGACGGTACATCCCTGAAC
CTTTTAGTAACTCCCCTAAATTTCTTGAATCCTATGACTATGCAACTTTC
AATTAACGTGATAACGTACGACGATGGCCGTTGACAGGTCTTTAGTATTA
AGCCCCCACGTGTTTTTTTTTATAAAATTGTCTTGATATTGGGATCATGT
GATTTAATATTAGGAATATTGTTGTATTTTTTCACCAACAGGGATGTATT
CTTAGCACACCCGAGAACAATCATGGACGGAAAGCAAATATCCTGATTGG
AGAAAAAGGTAAAAATATTAAGTTGTAGTTCAATTTTACTTCCCTCCTGC
AGTCAGTCAGCATTGTTTCAACATTCTAGTTCAACGCCCTTGCTACTTTC
CCAATTAGATATTCCGAAAGCGGAGTGGTGGTCGCCTTCACTAGAAACTC
TTAAATAATGAATTGTCCTTGCTGTATCTAAAAATATTTTGGTGTGGCAC
AATAATCTAGGAAAACGCGGTCTTGCAAAATTTCGTTATCCAAACCTTCC
AGATGTTCACGACCCTCAATGGCTTAGCTTGTCGGAAGAAATTGTTTACA
TTTAATGCAAACCTTCTCATTGGAAATAATGACACGAAGGAATCTTTATA
GGCTAAGACACTATCAAAAGGGGAGCTATTGAGACAGGGGGTATTTGATA
AAGAATCGTATAATATTATTAACGTGAAATGTCATCAAAATAAATGCAAT
CTATACATCTTGTCTAAAACTAGGTGGGTTATCAACCTCCTGGAAAATTC
AGTCAAAAATTGGTAAATAAATTATAAGAATCCCTACTGGATTACTGTGA
ATTGTGAAATTTTAAATCCCCATCCTAAAATATTTTCCACTTCTCATTGG
CATTTAGGGAGTGTCAGAAAGTATCTACTAGGGGGGAGTGGAGGATATTC
GAAAAATTAAGAAATATATTTCGCACCCACACCCCTAGCCTGGAAATCTT
TTTCGAACCCCCCCTCCCTCAAAAGGGTTAAAAAAATCTGCTCCCCTGCT
TGCTAAAAGTTTTTCCCCTGGACTCGAATTGACTGATTAATAAGGTGAGG
GTTATACTTATCGTACTTACTTATACCTACTTTTGAATAAGGGCGACTTG
TCACATATAAATCGGGTTTAACTGCAGTAAATTTCCATATTGTGAGTATT
CCTATAAGCCCCAATATCAAAATGTGGTGCACTCGTGTGGGGAGGATTAC
ATTATTATATAGAAGGCAGCAAGAGGCTTGATTTCAAAGGATAGGAGAAA
ATTTCGATTTTGGACTCCTGATTTCCTTTAAATATAGCTCTTTTTCGGAC
TGATTCTGCCCAGAAATGAGGCTTTCAATGTCTGAATCATATGGAATTTA
AAAGTAAAGATTTTCTTTGCATATACAATATCTTAATATCACAGGAGTAA
TATTATCAGAGATTAGGGGGCGCAACCATAATTTGCGCCGACAGCAGAAA
ATTTTCAATTTTCAACCACTTTGTTCGCTAAAAGCACTGCATTTTCATCT
CTTCTTAAAAAGGCTAGACTATGCTGACGAGTCTGCTAAATGACGCGCCT
TACACGCCCACGCGCCCTCATATTGTTAACGCACCTTACGCGCCCACGCG
CCCTAAAATATTACGCGCCCACGCGCCTACGCGCCCTGGTAATTTGACGC
GCCCTAAAAATTTGAGGCGCCTTAAAATATCGACGCGCCCTGGTAATTTG
ACGCGCCCTAAAAATTTGACGCGCCTTAGAATATCGACGCGCCCTGCAAT
CTTGTGCATAATATAATGAGACTTTTTCTATCTAGTTGAGCTCAAAACAA
GTGAAAATCCTCCCCCCTGTTTACAAAGCTGTGGTGGTTGTTTTGCTTCT
GCACAGGACCAGCTTTGTAGACTGGGGAGAAGGGTTTTTCTAAAGAATAG
TGTGGATTTCAAAAAAGTCCCATATATTTTGAACTTGATTGTGGTAATTT
GACGCGCCTTAAAAATTTGACGCGCCCTGATAATTTGACGCGCCCTAAAA
AATCGACGCGCCCTGATAATTTGACACTACCTAAGTAACTGACAGTAATG
AGATTGATTTGAAGATCAGAGTTTTCTCNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGTTGTTGTTATCC
CAGTGTCGTTCTATGAGCGATTGAGGATACAAACCTTTTTCCCGAGTATT
TTATTACCAAGCCATAATTTGTGTTTTCAGTACATGATTTTTTGCTACGT
CACTGCAGTAATCAAATTATTATTTTAAATCACTCTTTTTCAAATTGAGA
TGTACATTTAACAAAGACAGCGACAATGGAAAACTTTTCAAAAATTTCCA
AGTCAAAGATGATTACAAAAAGTTGGGTTTTCTGTGAAGGGACAAATTTG
TGCATTTTCCCCTGTAAATTGAATAGAAATAACGTGTAGCATGCACAAAT
TCANNNTCTTAAGAAATGATCATTTTGCTAACACCGGCATTCTTTTATAT
ACCAACCATGTATGATTAGACCGGTCCCATTATTCCGTCCGTCAAAACCG
TCGAAAACTTTAGGCACTTTCAGGCGTGTTGAAATCTTAGGGCGCGTCAA
ATTTTCAAGGCGCGTCGAAATTCTAGGGCGCGTCGAAATCATAGGGCGCG
TCAAATTTTCAAGGCGCGTCGAAATTCTAGGGCGCGTCGAAATCATAGGG
CGCGTCAAATTTTCAAGGCGCGTCGAAATCATAGGGCGCGTCAAATTTTC
AAGGCGCGTCGAAATCATAGGGCGCGTCAAATTTAGAAGGCGCGTCGAAA
TTCTAGGGCGCGTCAAATTTTCAAGGCGCGTCGAAATTCTAGGGCGCGTC
AAATTTTCAAGGCGCGTCAGGCGCGTAGGCGCGTGGGCGCGTAAGGCGCG
TTAGAAATATGAGGGCGCGTGGGCGCGTAAGGCACGTCATTTAGCAGACT
CCTATGCTGACATATGAAATTGTAAGAGGGGATCCCTTAACAAAATTTCT
CTGTTAGTCTGCTGAACTTATTTTTACACAATGACCAAGGAACCAAAATA
GAGAGGCTATCACAATGATATTTCATGAATACAGAAGTAACAATGATACG
AAATACGAAAATTTTTTAAATCTTCAAATGTGAAATCATGAAATTTAACC
TCCTGATTTGCCCAAAAATATTTCGCACCCCCCCCTTTTCCATTGAAAAT
ATTTTGGAACTCGCCCCCCTAAACCCTCAAAAAATATTTCGAACCCCCCT
GAAATCCTCCACCCCCCCTGGTAGATACTTTCTGACCACTCCCTTAGCAT
TTTATCTTAAAGATCCTGAATCGGGAACTGAAACAGGGATTTAATGATTC
TAATAAAGATTTGGATAACAATTGCAAGTTTCTTTCAATCTTTAGAAATA
CAATTGCAGAAAAACCACCTTCTGGCTACCATAAAAACCCTCTCTCCAGA
ATGGTCAATAACCTTGAACGTCCGTTTATATTCAGCTATCCCGTATGGGG
ATGGTATTGGTTGGTGTAGTATTATACTGATCACCAAGGGTTCTGACAAC
AGTGAGTATGGTTACCGAACACCACTGGTGGAGTTGAAGAAAACGGAAAA
AACTCTACATTTCGCATCTGCTATTAACGGTACTTCATCTGTTGCATACG
ATGTTGTCGATTCACCATTGCAAATCAACCAGAATTACCATATCCAAATT
GACCAAAGATATGTTAGTGCAGGGAATTACCAATATTCCGTACGTCTTGA
TGGTGTTGTAGTTTTTGAAACGTTGAATACAGACGCGAGACAGTTTTATG
ATATGAAAGTTTACGCGGGTAATCCTTGGCGGGATGCTTGTCCTGTGATG
ATACGTAATCTTCATCTTACTAATTTTGTGTAATTTATATCCATAGCTGG
ACGATTTAATTATTACTTCTCACTCCATATTTTATCTTTTGCACTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057126-exon-scaffold_285-1575043694:555741..555996 | TCONS_00057126-exon-scaffold_285-1575043694:555741..555996 | Clytia hemisphaerica | exon |
| TCONS_00057126-exon-scaffold_285-1575043694:551150..551701 | TCONS_00057126-exon-scaffold_285-1575043694:551150..551701 | Clytia hemisphaerica | exon |
| TCONS_00057126-exon-scaffold_285-1510915933:555741..555996 | TCONS_00057126-exon-scaffold_285-1510915933:555741..555996 | Clytia hemisphaerica | exon |
| TCONS_00057126-exon-scaffold_285-1510915933:551150..551701 | TCONS_00057126-exon-scaffold_285-1510915933:551150..551701 | Clytia hemisphaerica | exon |
| TCONS_00057126-exon-scaffold_285-1491911889:555741..555996 | TCONS_00057126-exon-scaffold_285-1491911889:555741..555996 | Clytia hemisphaerica | exon |
| TCONS_00057126-exon-scaffold_285-1491911889:551150..551701 | TCONS_00057126-exon-scaffold_285-1491911889:551150..551701 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_285 | supercontig | scaffold_285:551150..555996 - |
Blast
The following BLAST results are available for this feature:
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