TCONS_00057087 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057087
Unique NameTCONS_00057087
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1122

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057087 ID=TCONS_00057087|Name=TCONS_00057087|organism=Clytia hemisphaerica|type=transcript|length=1122bp
aaaatggtAGCTGTTTGGAACATTGGAGTCTAGATTATTGCAATATAATG
ACGTTGTTGGAAATGTAAATAAGAGTGGTTTTGGCTTTAAAATGGAGCGC
CCAATTTTGATCTACGCTGCGATATGTTGTTGGATATGTATCATCTCATC
ACACACTGTTTTAGAAGAATTCTATTGCAAAGATTCGAATGTTGAGTATG
GTCGTTCTTTGAAAGGTGGTAATGCTGCTGGATTCTTTGATAATTATggc
aaaactaaaaatattcagGAATGTACATTGAAATGTTGTGATGCAAAGAA
ATGCAACGTTGCAGTAATGGATGGCCGAACCAAAATATGCATGGGTGTCC
GTTGCTTCAACGAAACGTCCTGCTCAACAGTCCCCGCTACGAAAGGAGAG
GAAGAGCTACAGATTGCACAACTGACTGGTAGATCGCTTGATAAAAATGT
CACTATAGACAAAAAGACGGCTAAATTAAAATCCAACTTTACAGAAGACA
GATGTCCGACAAATGAAATCATGTATAACATGAAATTGTCCGAAGGCTTA
CATGCCGGACGCTTCACTGATATCGGACGTGTCCGAAGTATTAAGACGTG
TGTTCGGTATTGTTGTGGTGATGCTACGGAATGCGATTTAGCCTTTATGC
TTGGTAAAAgatGTTATTTAGTGAAATGCTACAACGAAGAGAAGTGTTCG
CCTCTTCCAGCATCCGATTATTCGTTTGAACAAAAGATGGCGTTTGTTTC
ACCTTGGCTCTTTGACAAGCGAAAGAAAATTAtgAAAGTCCCTTCAGGGC
TCCAGCAACATCATCTGCAATGTACTCAATCAAAAGTTTATGAGAAATCA
AAGCTTTTTGGAGGAAATGATGCCGGTAAATTTACACATGTTGGGAAAGT
CGGCAAAATGCATATCTGCTCTAAAATGTGTTGTGAAAATCATGATTGTG
ACTTAGCCTACATGTTTGGTAAAGATTGCTTCTTGGTCAAATGTTACTCT
GAGAAAGGATGTCGTGTGGTACCTGATGAAGATTTAAGGAAATCAACTGA
CTCCTCGCTTGACAAACAGATACAATACGTCATCAAACGAAAATTTGGTG
TCAAAGTTGGAGAAGATGGAAA
Run BLAST on NCBI

transcript from alignment at scaffold_285:614717..621048+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057087 ID=TCONS_00057087|Name=TCONS_00057087|organism=Clytia hemisphaerica|type=transcript|length=6332bp|location=Sequence derived from alignment at scaffold_285:614717..621048+ (Clytia hemisphaerica)
aaaatggtAGCTGTTTGGAACATTGGAGTCTAGATTATTGCAATATAATG
ACGTTGTTGGAAATGTAAATAAGAGTGGTTTTGGCTTTAAAATGGAGCGC
CCAATTTTGATCTACGCTGGTAAGGTTGGTTCTTCATGCCGATTACAAAA
GTTAAGAATTTTGATCTCTACAACAATATAGCCTTTTGTCGCGAGTCTTT
CCTTGGAAATTTGGATTATGATGTACTCTaaactttatgaaaaaaataaa
tatacccGCGCAGAGATGTTTGCCATGGGTTNGCGAGTCTTTCCTTGGAA
ATTTGGATTATGATGTACTCTaaactttatgaaaaaaataaatatacccG
CGCAGAGATGTTTGCCATGGGTTCTATAAGGGTCGGCTTTGAAGGTCAAC
TCTGGTGCACCTAGAAGAATTGCTTAACTTAGGTGACAATGGAGTGAAGG
GTTATCGGTCGATTATTCGTTGATTTGATTTGGTCTCAGGTGATGTAACC
CATACGGTACAAAACGTCTTTCTAGCGTTCGTAACATCTTTGTGATGTTA
GGTAAATGGTTAAAAATGTATGCAAGCTAGGAATCTAATCAAGCTCTTTA
AGTAGAATGTGATCATCTCCAggtctaaaatcaaaataaaagcaaGATAC
TGTAGATATGTGAatacattttttgatttttacgaattttaattcttgct
tttattttgattttagaccCGAAGATGATCAAGATTTGATCGAAATATAT
ATATTATCAATAAATAATAATGATACCGTTGTTGGTTCTTATTTCTTCGA
CATTCATCACTTGCCACAATGTTTTCATCCGGGTTTTCATCAAATCGTTT
CTTTAAGTAGAATTTTCCTTTAATCTATTCTCATCTTGTTTTCAAGCGAT
ATGTTGTTGGATATGTATCATCTCATCACACACTGTTTTAGAAGAATTCT
ATTGCAAAGATTCGAATGTTGAGTATGGTCGTTCTTTGAAAGGTGGTAAT
GCTGCTGGATTCTTTGATAATTATggcaaaactaaaaatattcagGTTTG
TATTATGTAATGATTGAAAAAGGCTTCTGTGATTTGACAATTCAGTGATT
TTAAGGCCGATGTCCACTTTTGTGCGAAATACGCGACAGTTTTTTACTCA
ACCGTTATTGCCTGAAGAAATTacttcataaaaagtttcgcgcaaacaaa
gttcaacttttttcaaccattacgtcaattttgaccaatggaattgcttc
ttttttcaaccgaccaatgaccttacagaAACGTTAAAAAGTTCTTCTCA
TTTCGCGTGAAAGTGGAGACCGTCCTTTATACTTATTCTGTTAATCCGTT
GCAGGAAGGGGAAAATTTATGTATCGTCGCTTGCAAGTGTTTGAATGTAA
AACTAGATACTAAGGCTtgggaaagaaaaagccttgttaaaaagttattt
ttccttttcattcgCGTTTCACTGACTATACATTAGTTAGTTAATTAGCC
CTACTAGTATGTACCCTGAACAAGAATTTCTAAAGATATAATAGTTACTG
GCTTTGTGATAAAGTTTCCTGTTTCCTTATTAGGAATGTACATTGAAATG
TTGTGATGCAAAGAAATGCAACGTTGCAGTAATGGATGGCCGAACCAAAA
TATGCATGGGTGTCCGTTGCTTCAACGAAACGTCCTGCTCAACAGTCCCC
GCTACGAAAGGAGAGGAAGAGCTACAGATTGCACAACTGACTGGTAGATC
GCTTGATAAAAATGTCACTATAGGTGAGtagaatttctaaaaaaaattcc
ccaccgaatttctttttcataccGGCCCGTTTGGGTTGTTCTAGGGTTGG
AAAATCTGGGATATGCGGACCGAACCTCAgaaaaccgacccttattaTCT
TTTGTGAAAAAGTTGACTCTAGTAAGGCTATTACCCTAAAAGAGATCAAA
AAGGGGGAAACTCCAACCCtaagtaaaatattttaattttttattgtttt
tgtaaCCATTAGAGTTACTTAGAAAGGTAAAAAACCGACCTTTATCTTTC
GAAAATAGCTTTTTTTGCCAGAGAACCCACCCGTGCTATGATATGTAAAG
ACTTTAGTATAAAAAAGTTATCGTTCTTGATTTTTCTTAGTATTTGAATT
CTATATATTGGTAGTCAGATAAAAATCTGAATTCGCAAATATCTTCCAAA
GCAGAACAAAGTATAGACACATTCAAATCTCTATTCAAATGTCGAAGGTA
GTTCAAATGTAGGTTCCCCGGTCTTCCTCATCTAATCATTTATCTAATTC
GTTAAAAATTTCGATCTCTGCAACAATATAGCCTTTTGTCATGAGTCTTT
CCTTGGAAATTTGGATTATGATGTACTCTaaactttatgaaaaaaaaatt
acccgcGCAGAGAGATGTTTGCCATGGGTgttctctaagggtcggtttta
gGATGTCCCATCTGCAGATACCCGTCATtggccaaccctagtaccccaaG
AAAAATTTAGGTGAAAATGGAGTCACGCGGTATCGGTCGATTATTTGTTG
TATTGCTTTGGTCTcgctagcctatactagacgtcacccgcatttttttc
tacgcaatcaATATCTATTctactttgcgactttttcgaatgtctgGACT
TTTTAATTCCTTTTAGACAAAAAGACGGCTAAATTAAAATCCAACTTTAC
AGAAGACAGATGTCCGACAAATGAAATCATGTATAACATGAAATTGTCCG
AAGGCTTACATGCCGGACGCTTCACTGATATCGGACGTGTCCGAAGTATT
AAGACGTGTGTTCGGTATTGTTGTGGTGATGCTACGGAATGCGATTTAGC
CTTTATGCTTGGTAAAAggtgtgatttctttttttgtaatttgaaaccTC
TTTAGGTCGAATCCATTTTATCATACAACCAAAAACACTGGGTCCCTTAG
CTTGAAGCTTATTGACACCCCCTTcttcacagacccactgggaccccttc
ccactggaaaacttGGCCGAAacatcgtccccagtggaaaattgtactcc
aatttttgtccccgctgaacttgatcaaataaatcaatccccactgcaaa
atattataacAATATGGGATTATCaatcccatcgagtttcagtccgttat
tttaccccccccctcccttactggctgaaaaaatcccaccgggtctgtga
gaagggggtgtttgaAGGTCTGACATGGAATTCTTATCGCGGATATGCTA
TTCTGCAAACAACTTTagtttacttttgtttttgaatcTCTCTTACTAGA
ACAATTTCTTACCAAGGTACCACAAAATTCTTCATTGACATTCAAACCAT
AGGATCACCTTGAAGAACATTGCTAGGTCTAAcaaatagtttttgaaaat
gaatcaataaaaatgttttcaattttagatGTTATTTAGTGAAATGCTAC
AACGAAGAGAAGTGTTCGCCTCTTCCAGCATCCGATTATTCGTTTGAACA
AAAGATGGCGTTTGTTTCACCTTGGCTCTTTGACAAGCGAAAGAAAATTA
GTACGTTTTTGCTTGACTGGATATCTTTACAGAATTTTACTAACCTATCA
TTACTGGCTGCCTAGAGACagtctacaatcatggtcgtaatatttgagaa
aaaaagggaagTTCNATCATTACTGGCTGCCTAGAGAcaatctacaatca
tggtcgtaatatttgagaaaaaagggaagttCCTACGAAATCTTACAAAC
ACAAACGATTAAAATGGTCAAATCGGGcttagaatatagcctggaagtct
ataagcctctcccgaattgaaatacttaaataaattcatcaatcagccca
aaagcgactttctcgcccgaaaaACGTGgaaatagattttgaccatgatt
gtagtccTATTTGATTTCTGATATGACTTTTATTTTCATCGGTAAGCTcc
tacttttcaatttttttgcagtgatgatTTTCCAGTAATTCATTAAAAAC
TTACCGACCTTCCTGTATACCCTTGGAGCCCCCACCCCTCAACTAGTGAA
TCAAGGCTAATACTCAAAGATATTGTCGTGTGTGTTTTGACGTTTACTGT
TATGTTCTAGAAAAATTAATAtccaaacttttatttttagtgAAAGTCCC
TTCAGGGCTCCAGCAACATCATCTGCAATGTACTCAATCAAAAGTTTATG
AGAAATCAAAGCTTTTTGGAGGAAATGATGCCGGTAAATTTACACATGTT
GGGAAAGTCGGCAAAATGCATATCTGCTCTAAAATGTGTTGTGAAAATCA
TGATTGTGACTTAGCGTAAGTTATGTTTTAGTTAAGTATGAGTTTTAAGG
TAGTCTACCTATTCACCTATGTCAGATTTCAATTGATGCTTTTaggttga
ttttttttaaagttttaaagaaattcaaaataaatttttttaatgttctG
AGACTTCTTCTAGAGTATACGATCcacaaaatcactaaaaaagggaatag
tttaggagaggcgtgataaattcgggtggtgagtaagcagtggcggagat
gtttacagtattcaaaaactctaccgccacttttttcccgtaaaccgccc
tgacgccctaaaTATTTCCCGCGTTTGCTGACCTCTAATgctaaacggac
gatagcatcgtctacttCTAGAGTTGTTTAAAACAGTTTGTTTGAaagta
tgaaaaatgaaaatgtatcgAGGGGATTGTACGGGGAGGCTAACGCACAC
CGAAATACAGACACATATATTTCTCGGATCACCGACAACACCGAcagaaa
aaattgctaaaatttttATCCCGGTgtgaaaataccctggaatttcagcc
catttaactttccatttgcctatgacctatattaggggtagaaaccaatc
aagtagtcagacggcttagaagtaagtgtgagtcggtagatataagtttg
gcatgaaattatggctaatcctcgaataagaagttttggggaaaatttgt
cccgataactacaatattagtataaataagtgaggatcgcctacaaccat
aactgcagggagggGAGAGGTAAAATATTCCATCCTGTCAGCTTCCAACT
AGAGCGTCGACTTGAACAGGGAGATGTGATGGCCATCATTTGAACACGAC
GTCACATGGCCattagcaaagtagactcagttggcgaagggcggccaccc
agccattcgaatactgtatatagcgcttatcaaataaaagttaaaccacG
ATTTACcctgtgttaaatccaaatttaactttccatttgcctatgaccaa
actattacttttttttacttcaaacgCCGAAACACAGACGGAAATGAGTG
CTAATACCGTCCCATCGTCAAACCCATACGCCCTATGTATTGCATCTTTT
AAATTGTTCAATTTTTTAGCTACATGTTTGGTAAAGATTGCTTCTTGGTC
AAATGTTACTCTGAGAAAGGATGTCGTGTGGTACCTGATGAAGATTTAAG
GAAATCAACTGACTCCTCGCTTGACAAACAGATACAATACGTCATCAAAC
GAAAATTTGGTGTCAAAGTTGGAGAAGGTAAGGTTTtggtaaaatgtttt
tcaattgtTCCTTTATTTTGAAGGGAGGGGGAATCTCGGAGGTAATTTCC
ATAAGATTGGTTGCTTGGTTTTAAATTGAAAACTAGAGCTTCCCGCCGTA
GAAGCTCTCCAACCTAAAGACCTGAACTATGAAAGTAATATGCTTTCTAA
AACNTCGATTGTTCCTTCATTTTGAAGGGAGGTGGAATCTCGAAGGTAAT
TTCCATAAGATTGATTGCTTGGTTTTAAATTGAAAACTAGAGCTTCCCGC
CGTAGAAGCTCTCCAACCTAAAGACCTGAATTATGGAAGTAATATAGTGG
AGAGTCTTTAACAACTAATACAACCTGTAGAACTACTCGAATGTCCCCTT
TACTGAGCaggttttatggtcccttcagttaataaGGCCTTATAAACCTT
GTCATTACTCTAAATTTCCATAACTCAAATTTGTGTCCCCGTGCGTGTTT
GTGTTATGTAGCTTCAGTATTAATCCGGTAAAGCCTACGTGCGGTTTGTG
GGTTTTTTGTAAAACTTGATAGAATAGACCTTATcgtagtttttgatttt
tctgaaacaGCGATGCATTGGGGGATTGTTTtaggggtattacaatagaa
ttccctcgaggaataccatcgaaacaatcccacaatgcatcgctttttta
gaaaaatcaaaaactccgataagatctattaaaAGCGATCGATCTAAAAC
AGGCTTACCATTTTTCATTCAATAGATGGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035962XLOC_035962Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057087-exon-scaffold_285-1491911889:614717..614835TCONS_00057087-exon-scaffold_285-1491911889:614717..614835Clytia hemisphaericaexon
TCONS_00057087-exon-scaffold_285-1510915933:614717..614835TCONS_00057087-exon-scaffold_285-1510915933:614717..614835Clytia hemisphaericaexon
TCONS_00057087-exon-scaffold_285-1575043694:614717..614835TCONS_00057087-exon-scaffold_285-1575043694:614717..614835Clytia hemisphaericaexon
TCONS_00057087-exon-scaffold_285-1491911889:615613..615761TCONS_00057087-exon-scaffold_285-1491911889:615613..615761Clytia hemisphaericaexon
TCONS_00057087-exon-scaffold_285-1510915933:615613..615761TCONS_00057087-exon-scaffold_285-1510915933:615613..615761Clytia hemisphaericaexon
TCONS_00057087-exon-scaffold_285-1575043694:615613..615761TCONS_00057087-exon-scaffold_285-1575043694:615613..615761Clytia hemisphaericaexon
TCONS_00057087-exon-scaffold_285-1491911889:616300..616489TCONS_00057087-exon-scaffold_285-1491911889:616300..616489Clytia hemisphaericaexon
TCONS_00057087-exon-scaffold_285-1510915933:616300..616489TCONS_00057087-exon-scaffold_285-1510915933:616300..616489Clytia hemisphaericaexon
TCONS_00057087-exon-scaffold_285-1575043694:616300..616489TCONS_00057087-exon-scaffold_285-1575043694:616300..616489Clytia hemisphaericaexon
TCONS_00057087-exon-scaffold_285-1491911889:617383..617584TCONS_00057087-exon-scaffold_285-1491911889:617383..617584Clytia hemisphaericaexon
TCONS_00057087-exon-scaffold_285-1510915933:617383..617584TCONS_00057087-exon-scaffold_285-1510915933:617383..617584Clytia hemisphaericaexon
TCONS_00057087-exon-scaffold_285-1575043694:617383..617584TCONS_00057087-exon-scaffold_285-1575043694:617383..617584Clytia hemisphaericaexon
TCONS_00057087-exon-scaffold_285-1491911889:618145..618266TCONS_00057087-exon-scaffold_285-1491911889:618145..618266Clytia hemisphaericaexon
TCONS_00057087-exon-scaffold_285-1510915933:618145..618266TCONS_00057087-exon-scaffold_285-1510915933:618145..618266Clytia hemisphaericaexon
TCONS_00057087-exon-scaffold_285-1575043694:618145..618266TCONS_00057087-exon-scaffold_285-1575043694:618145..618266Clytia hemisphaericaexon
TCONS_00057087-exon-scaffold_285-1491911889:618857..619031TCONS_00057087-exon-scaffold_285-1491911889:618857..619031Clytia hemisphaericaexon
TCONS_00057087-exon-scaffold_285-1510915933:618857..619031TCONS_00057087-exon-scaffold_285-1510915933:618857..619031Clytia hemisphaericaexon
TCONS_00057087-exon-scaffold_285-1575043694:618857..619031TCONS_00057087-exon-scaffold_285-1575043694:618857..619031Clytia hemisphaericaexon
TCONS_00057087-exon-scaffold_285-1491911889:620136..620293TCONS_00057087-exon-scaffold_285-1491911889:620136..620293Clytia hemisphaericaexon
TCONS_00057087-exon-scaffold_285-1510915933:620136..620293TCONS_00057087-exon-scaffold_285-1510915933:620136..620293Clytia hemisphaericaexon
TCONS_00057087-exon-scaffold_285-1575043694:620136..620293TCONS_00057087-exon-scaffold_285-1575043694:620136..620293Clytia hemisphaericaexon
TCONS_00057087-exon-scaffold_285-1491911889:621042..621048TCONS_00057087-exon-scaffold_285-1491911889:621042..621048Clytia hemisphaericaexon
TCONS_00057087-exon-scaffold_285-1510915933:621042..621048TCONS_00057087-exon-scaffold_285-1510915933:621042..621048Clytia hemisphaericaexon
TCONS_00057087-exon-scaffold_285-1575043694:621042..621048TCONS_00057087-exon-scaffold_285-1575043694:621042..621048Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_285supercontigscaffold_285:614717..621048 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.143673	0.312367	0	0.172179	0.0968757	0.0351431	8.57796	12.5643	4.1112	0.673209	6.53666	7.75354	6.12328	6.27949	5.70551	12.2063	10.6616	10.7374	0.0926681	0.0432252	5.5448	7.33319	6.78276	5.13199	5.50869	5.89964	0.988853	1.50501	0	0.131827
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057087 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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