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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057049 ID=TCONS_00057049|Name=TCONS_00057049|organism=Clytia hemisphaerica|type=transcript|length=1450bp
ACAAAGGAGTTGGAGACAGCCGGCAAAAAGGTCATCAAAGCTGTTCAAGG
TCTCACGTTCGATCTTGAATCTATTTCGAAACGACCAAAAGGAGATTCAC
TACTACAACTTCAACCTTTCAAAGATGACGAAGGAATCATACGTGTCGGT
GGTCGTCTGAAGAAATCAAGTCTTCAGATCGAATTGAAGCATCCAATCAT
TCTCCCCAAAGCTCATCCACTTTCAAAGATGATACTGCGTTGGTGCCACA
TCAAAGCAGCGCACAGCGGCAGAGGTTTGACAATCAACGAAGTAAGAACC
TCTGGCTATTGGATCATCGGAATCAGCTCGTTAACCAGAAGTTTCATCAC
AAGCTGTGTCCTCTGTCGTCGATTCAGAGGAAAACAAATGCAACAAAAGA
TGGCAGACCTACCAGAAGACAGACTGGAACCAGAACCTCCATTCACCTAC
GCTGCAGTCGACATGTTTGGACCCTTTGCAATCAAAGTGCGAAGGGCAAC
TGTGAAGAACTACGTCGGTTTGTTCACCTGCATGTCTTCAAGAGCTGTCC
ATCTGGAGAGTACAACATCCATGAATACTGACGCGTTCATTCTGATGCTG
AGACGTGTCATCGCCAGACGAGGCAACATTCGATCACTGAGGTCAGACAA
TGGCACCAATTTCGTCGGTGCTGACAATGAGATGAAGAAAGCCATCCATG
AACTCGATCACGAACGAATCAACGATTTCCTTCAAGGCAACGGAGGAGAA
TGGCTACATTGGAAGAAGAATCCACCAAAGGCCAGCCACATGGGTGGCGT
CTGGGAACGACAAATCAGGTCATTTTCCAGAAGGCTGATTTATATTGTAG
GAAGCACTGGAGAAGAGTTCAACACATTGCCAACGAGTTTTGGACCCGCT
GGAGGAAGAAATATCTCCCAACCCTACAATCCAGATCAAAATGGAATCAA
CTACAAAGAAACATCAAAGTCGACGACATCGTCATCATCAACGATGAGAG
CAGTCATCGAAACGACTGGAAACTTGGACGAGTTATTGATGTCAATCGAA
GCGATGATGGCAACGTTCGAAGCTCCAAATTGAAGACTTCATCTGGTGAA
TTCGTACGTCCGATTACGAAGTTGGTTTCTCTCGTCGATTGAGCGATGAC
TGAGCTATCGAAACAGCGTCTACAAATACGTGTAGTGTATTATATGTTAT
TGAAAGAATGAATTGAAGTCATTCTATATTATGTTGTTGAAAGAATGAAA
TGAAGTCATTCTATTATATATCGTGTTGAAAGAATGAATTGAAGTCATTC
TATATTTCGTCGTCAAAAGAATGAATTGAAGTCATTCTACGTGAAATGTT
ATCTTTCGATTTGATTCGTTTACTTGGATGATTTGCTAATTACGACAACA
TGCTTACCAGATTGATAATGATTGATTTCAGGACATAAGTATGAACTGAT Run BLAST on NCBI protein sequence of TCONS_00057049-protein >TCONS_00057049-protein ID=TCONS_00057049-protein|Name=TCONS_00057049-protein|organism=Clytia hemisphaerica|type=polypeptide|length=360bp
TKELETAGKKVIKAVQGLTFDLESISKRPKGDSLLQLQPFKDDEGIIRVG
GRLKKSSLQIELKHPIILPKAHPLSKMILRWCHIKAAHSGRGLTINEVRT
SGYWIIGISSLTRSFITSCVLCRRFRGKQMQQKMADLPEDRLEPEPPFTY
AAVDMFGPFAIKVRRATVKNYVGLFTCMSSRAVHLESTTSMNTDAFILML
RRVIARRGNIRSLRSDNGTNFVGADNEMKKAIHELDHERINDFLQGNGGE
WLHWKKNPPKASHMGGVWERQIRSFSRRLIYIVGSTGEEFNTLPTSFGPA
GGRNISQPYNPDQNGINYKETSKSTTSSSSTMRAVIETTGNLDELLMSIE
AMMATFEAPN Run BLAST on NCBI transcript from alignment at scaffold_285:3101..4758+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057049 ID=TCONS_00057049|Name=TCONS_00057049|organism=Clytia hemisphaerica|type=transcript|length=1658bp|location=Sequence derived from alignment at scaffold_285:3101..4758+ (Clytia hemisphaerica)
ACAAAGGAGTTGGAGACAGCCGGCAAAAAGGTCATCAAAGCTGTTCAAGG
TCTCACGTTCGATCTTGAATCTATTTCGAAACGACCAAAAGGAGATTCAC
TACTACAACTTCAACCTTTCAAAGATGACGAAGGAATCATACGTGTCGGT
GGTCGTCTGAAGAAATCAAGTCTTCAGATCGAATTGAAGCATCCAATCAT
TCTCCCCAAAGCTCATCCACTTTCAAAGATGATACTGCGTTGGTGCCACA
TCAAAGCAGCGCACAGCGGCAGAGGTTTGACAATCAACGAAGTAAGAACC
TCTGGCTATTGGATCATCGGAATCAGCTCGTTAACCAGAAGTTTCATCAC
AAGCTGTGTCCTCTGTCGTCGATTCAGAGGAAAACAAATGCAACAAAAGA
TGGCAGACCTACCAGAAGACAGACTGGAACCAGAACCTCCATTCACCTAC
GCTGCAGTCGACATGTTTGGACCCTTTGCAATCAAAGTGCGAAGGGCAAC
TGTGAAGAACTACGTCGGTTTGTTCACCTGCATGTCTTCAAGAGCTGTCC
ATCTGGAGAGTACAACATCCATGAATACTGACGCGTTCATTCTGATGCTG
AGACGTGTCATCGCCAGACGAGGCAACATTCGATCACTGAGGTCAGACAA
TGGCACCAATTTCGTCGGTGCTGACAATGAGATGAAGAAAGCCATCCATG
AACTCGATCACGAACGAATCAACGATTTCCTTCAAGGCAACGGAGGAGAA
TGGCTACATTGGAAGAAGAATCCACCAAAGGCCAGCCACATGGGTGGCGT
CTGGGAACGACAAATCAGGTCAGTACGTTCCATTCTTTCTTCCCTTCTTC
ACACTCATGGCGAAAGTTTGAACGATGAGTCCTTTAGGACGTTGCTGGCT
GAAGTTGAGGCAATCTTAAATTCGAAACCCCTGACTGTTGAAAGCTTGAA
TGACCCAAACAGTCCATTGCCTCTTTCCCCTGCAAATCTGCTTACcatga
aatcgaaagtaatcatGCCACCTCCTGGAGTTTTCCAGAAGGCTGATTTA
TATTGTAGGAAGCACTGGAGAAGAGTTCAACACATTGCCAACGAGTTTTG
GACCCGCTGGAGGAAGAAATATCTCCCAACCCTACAATCCAGATCAAAAT
GGAATCAACTACAAAGAAACATCAAAGTCGACGACATCGTCATCATCAAC
GATGAGAGCAGTCATCGAAACGACTGGAAACTTGGACGAGTTATTGATGT
CAATCGAAGCGATGATGGCAACGTTCGAAGCTCCAAATTGAAGACTTCAT
CTGGTGAATTCGTACGTCCGATTACGAAGTTGGTTTCTCTCGTCGATTGA
GCGATGACTGAGCTATCGAAACAGCGTCTACAAATACGTGTAGTGTATTA
TATGTTATTGAAAGAATGAATTGAAGTCATTCTATATTATGTTGTTGAAA
GAATGAAATGAAGTCATTCTATTATATATCGTGTTGAAAGAATGAATTGA
AGTCATTCTATATTTCGTCGTCAAAAGAATGAATTGAAGTCATTCTACGT
GAAATGTTATCTTTCGATTTGATTCGTTTACTTGGATGATTTGCTAATTA
CGACAACATGCTTACCAGATTGATAATGATTGATTTCAGGACATAAGTAT
GAACTGAT Coding sequence (CDS) from alignment at scaffold_285:3101..4758+ >TCONS_00057049 ID=TCONS_00057049|Name=TCONS_00057049|organism=Clytia hemisphaerica|type=CDS|length=2166bp|location=Sequence derived from alignment at scaffold_285:3101..4758+ (Clytia hemisphaerica)
ACAAAGGAGTTGGAGACAGCCGGCAAAAAGGTCATCAAAGCTGTTCAAGG
TCTCACGTTCGATCTTGAATCTATTTCGAAACGACCAAAAGGAGATTCAC
TACTACAACTTCAACCTTTCAAAGATGACGAAGGAATCATACGTGTCGGT
GGTCGTCTGAAGAAATCAAGTCTTCAGATCGAATTGAAGCATCCAATCAT
TCTCCCCAAAGCTCATCCACTTTCAAAGATGATACTGCGTTGGTGCCACA
TCAAAGCAGCGCACAGCGGCAGAGGTTTGACAATCAACGAAGTAAGAACC
TCTGGCTATTGGATCATCGGAATCAGCTCGTTAACCAGAAGTTTCATCAC
AAGCTGTGTCCTCTGTCGTCGATTCAGAGGAAAACAAATGCAACAAAAGA
TGGCAGACCTACCAGAAGACAGACTGGAACCAGAACCTCCATTCACCTAC
GCTGCAGTCGACATGTTTGGACCCTTTGCAATCAAAGTGCGAAGGGCAAC
TGTGAAGAACTACGTCGGTTTGTTCACCTGCATGTCTTCAAGAGCTGTCC
ATCTGGAGAGTACAACATCCATGAATACTGACGCGTTCATTCTGATGCTG
AGACGTGTCATCGCCAGACGAGGCAACATTCGATCACTGAGGTCAGACAA
TGGCACCAATTTCGTCGGTGCTGACAATGAGATGAAGAAAGCCATCCATG
AACTCGATCACGAACGAATCAACGATTTCCTTCAAGGCAACGGAGGAGAA
TGGCTACATTGGAAGAAGAATCCACCAAAGGCCAGCCACATGGGTGGCGT
CTGGGAACGACAAATCAGGTCATTTTCCAGAAGGCTGATTTATATTGTAG
GAAGCACTGGAGAAGAGTTCAACACATTGCCAACGAGTTTTGGACCCGCT
GGAGGAAGAAATATCTCCCAACCCTACAATCCAGATCAAAATGGAATCAA
CTACAAAGAAACATCAAAGTCGACGACATCGTCATCATCAACGATGAGAG
CAGTCATCGAAACGACTGGAAACTTGGACGAGTTATTGATGTCAATCGAA
GCGATGATGGCAACGTTCGAAGCTCCAAATTGAACAAAGGAGTTGGAGAC
AGCCGGCAAAAAGGTCATCAAAGCTGTTCAAGGTCTCACGTTCGATCTTG
AATCTATTTCGAAACGACCAAAAGGAGATTCACTACTACAACTTCAACCT
TTCAAAGATGACGAAGGAATCATACGTGTCGGTGGTCGTCTGAAGAAATC
AAGTCTTCAGATCGAATTGAAGCATCCAATCATTCTCCCCAAAGCTCATC
CACTTTCAAAGATGATACTGCGTTGGTGCCACATCAAAGCAGCGCACAGC
GGCAGAGGTTTGACAATCAACGAAGTAAGAACCTCTGGCTATTGGATCAT
CGGAATCAGCTCGTTAACCAGAAGTTTCATCACAAGCTGTGTCCTCTGTC
GTCGATTCAGAGGAAAACAAATGCAACAAAAGATGGCAGACCTACCAGAA
GACAGACTGGAACCAGAACCTCCATTCACCTACGCTGCAGTCGACATGTT
TGGACCCTTTGCAATCAAAGTGCGAAGGGCAACTGTGAAGAACTACGTCG
GTTTGTTCACCTGCATGTCTTCAAGAGCTGTCCATCTGGAGAGTACAACA
TCCATGAATACTGACGCGTTCATTCTGATGCTGAGACGTGTCATCGCCAG
ACGAGGCAACATTCGATCACTGAGGTCAGACAATGGCACCAATTTCGTCG
GTGCTGACAATGAGATGAAGAAAGCCATCCATGAACTCGATCACGAACGA
ATCAACGATTTCCTTCAAGGCAACGGAGGAGAATGGCTACATTGGAAGAA
GAATCCACCAAAGGCCAGCCACATGGGTGGCGTCTGGGAACGACAAATCA
GGTCATTTTCCAGAAGGCTGATTTATATTGTAGGAAGCACTGGAGAAGAG
TTCAACACATTGCCAACGAGTTTTGGACCCGCTGGAGGAAGAAATATCTC
CCAACCCTACAATCCAGATCAAAATGGAATCAACTACAAAGAAACATCAA
AGTCGACGACATCGTCATCATCAACGATGAGAGCAGTCATCGAAACGACT
GGAAACTTGGACGAGTTATTGATGTCAATCGAAGCGATGATGGCAACGTT
CGAAGCTCCAAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057049-exon-scaffold_285-1491911889:3101..3922 | TCONS_00057049-exon-scaffold_285-1491911889:3101..3922 | Clytia hemisphaerica | exon |
| TCONS_00057049-exon-scaffold_285-1510915933:3101..3922 | TCONS_00057049-exon-scaffold_285-1510915933:3101..3922 | Clytia hemisphaerica | exon |
| TCONS_00057049-exon-scaffold_285-1575043694:3101..3922 | TCONS_00057049-exon-scaffold_285-1575043694:3101..3922 | Clytia hemisphaerica | exon |
| TCONS_00057049-exon-scaffold_285-1491911889:4131..4758 | TCONS_00057049-exon-scaffold_285-1491911889:4131..4758 | Clytia hemisphaerica | exon |
| TCONS_00057049-exon-scaffold_285-1510915933:4131..4758 | TCONS_00057049-exon-scaffold_285-1510915933:4131..4758 | Clytia hemisphaerica | exon |
| TCONS_00057049-exon-scaffold_285-1575043694:4131..4758 | TCONS_00057049-exon-scaffold_285-1575043694:4131..4758 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_285 | supercontig | scaffold_285:3101..4758 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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