|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00057048 ID=TCONS_00057048|Name=TCONS_00057048|organism=Clytia hemisphaerica|type=transcript|length=1683bp
NTTGTTTTCAACAAAGGAGTTGGAGACAGCCGGCAAAAAGGTCATCAAAG
CTGTTCAAGGTCTCACGTTCGATCTTGAATCTATTTCGAAACGACCAAAA
GGAGATTCACTACTACAACTTCAACCTTTCAAAGATGACGAAGGAATCAT
ACGTGTCGGTGGTCGTCTGAAGAAATCAAGTCTTCAGATCGAATTGAAGC
ATCCAATCATTCTCCCCAAAGCTCATCCACTTTCAAAGATGATACTGCGT
TGGTGCCACATCAAAGCAGCGCACAGCGGCAGAGGTTTGACAATCAACGA
AGTAAGAACCTCTGGCTATTGGATCATCGGAATCAGCTCGTTAACCAGAA
GTTTCATCACAAGCTGTGTCCTCTGTCGTCGATTCAGAGGAAAACAAATG
CAACAAAAGATGGCAGACCTACCAGAAGACAGACTGGAACCAGAACCTCC
ATTCACCTACGCTGCAGTCGACATGTTTGGACCCTTTGCAATCAAAGTGC
GAAGGGCAACTGTGAAGAACTACGTCGGTTTGTTCACCTGCATGTCTTCA
AGAGCTGTCCATCTGGAGAGTACAACATCCATGAATACTGACGCGTTCAT
TCTGATGCTGAGACGTGTCATCGCCAGACGAGGCAACATTCGATCACTGA
GGTCAGACAATGGCACCAATTTCGTCGGTGCTGACAATGAGATGAAGAAA
GCCATCCATGAACTCGATCACGAACGAATCAACGATTTCCTTCAAGGCAA
CGGAGGAGAATGGCTACATTGGAAGAAGAATCCACCAAAGGCCAGCCACA
TGGGTGGCGTCTGGGAACGACAAATCAGGTCAGTACGTTCCATTCTTTCT
TCCCTTCTTCACACTCATGGCGAAAGTTTGAACGATGAGTCCTTTAGGAC
GTTGCTGGCTGAAGTTGAGGCAATCTTAAATTCGAAACCCCTGACTGTTG
AAAGCTTGAATGACCCAAACAGTCCATTGCCTCTTTCCCCTGCAAATCTG
CTTACcatgaaatcgaaagtaatcatGCCACCTCCTGGAGTTTTCCAGAA
GGCTGATTTATATTGTAGGAAGCACTGGAGAAGAGTTCAACACATTGCCA
ACGAGTTTTGGACCCGCTGGAGGAAGAAATATCTCCCAACCCTACAATCC
AGATCAAAATGGAATCAACTACAAAGAAACATCAAAGTCGACGACATCGT
CATCATCAACGATGAGAGCAGTCATCGAAACGACTGGAAACTTGGACGAG
TTATTGATGTCAATCGAAGCGATGATGGCAACGTTCGAAGCTCCAAATTG
AAGACTTCATCTGGTGAATTCGTACGTCCGATTACGAAGTTGGTTTCTCT
CGTCGATTGAGCGATGACTGAGCTATCGAAACAGCGTCTACAAATACGTG
TAGTGTATTATATGTTATTGAAAGAATGAATTGAAGTCATTCTATATTAT
GTTGTTGAAAGAATGAAATGAAGTCATTCTATTATATATCGTGTTGAAAG
AATGAATTGAAGTCATTCTATATTTCGTCGTCAAAAGAATGAATTGAAGT
CATTCTACGTGAAATGTTATCTTTCGATTTGATTCGTTTACTTGGATGAT
TTGCTAATTACGACAACATGCTTACCAGATTGATAATGATTGATTTCAGG
ACATAAGTATGAACTGATGCATACCTTCTTATG Run BLAST on NCBI transcript from alignment at scaffold_285:3091..4773+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00057048 ID=TCONS_00057048|Name=TCONS_00057048|organism=Clytia hemisphaerica|type=transcript|length=1683bp|location=Sequence derived from alignment at scaffold_285:3091..4773+ (Clytia hemisphaerica)
NTTGTTTTCAACAAAGGAGTTGGAGACAGCCGGCAAAAAGGTCATCAAAG
CTGTTCAAGGTCTCACGTTCGATCTTGAATCTATTTCGAAACGACCAAAA
GGAGATTCACTACTACAACTTCAACCTTTCAAAGATGACGAAGGAATCAT
ACGTGTCGGTGGTCGTCTGAAGAAATCAAGTCTTCAGATCGAATTGAAGC
ATCCAATCATTCTCCCCAAAGCTCATCCACTTTCAAAGATGATACTGCGT
TGGTGCCACATCAAAGCAGCGCACAGCGGCAGAGGTTTGACAATCAACGA
AGTAAGAACCTCTGGCTATTGGATCATCGGAATCAGCTCGTTAACCAGAA
GTTTCATCACAAGCTGTGTCCTCTGTCGTCGATTCAGAGGAAAACAAATG
CAACAAAAGATGGCAGACCTACCAGAAGACAGACTGGAACCAGAACCTCC
ATTCACCTACGCTGCAGTCGACATGTTTGGACCCTTTGCAATCAAAGTGC
GAAGGGCAACTGTGAAGAACTACGTCGGTTTGTTCACCTGCATGTCTTCA
AGAGCTGTCCATCTGGAGAGTACAACATCCATGAATACTGACGCGTTCAT
TCTGATGCTGAGACGTGTCATCGCCAGACGAGGCAACATTCGATCACTGA
GGTCAGACAATGGCACCAATTTCGTCGGTGCTGACAATGAGATGAAGAAA
GCCATCCATGAACTCGATCACGAACGAATCAACGATTTCCTTCAAGGCAA
CGGAGGAGAATGGCTACATTGGAAGAAGAATCCACCAAAGGCCAGCCACA
TGGGTGGCGTCTGGGAACGACAAATCAGGTCAGTACGTTCCATTCTTTCT
TCCCTTCTTCACACTCATGGCGAAAGTTTGAACGATGAGTCCTTTAGGAC
GTTGCTGGCTGAAGTTGAGGCAATCTTAAATTCGAAACCCCTGACTGTTG
AAAGCTTGAATGACCCAAACAGTCCATTGCCTCTTTCCCCTGCAAATCTG
CTTACcatgaaatcgaaagtaatcatGCCACCTCCTGGAGTTTTCCAGAA
GGCTGATTTATATTGTAGGAAGCACTGGAGAAGAGTTCAACACATTGCCA
ACGAGTTTTGGACCCGCTGGAGGAAGAAATATCTCCCAACCCTACAATCC
AGATCAAAATGGAATCAACTACAAAGAAACATCAAAGTCGACGACATCGT
CATCATCAACGATGAGAGCAGTCATCGAAACGACTGGAAACTTGGACGAG
TTATTGATGTCAATCGAAGCGATGATGGCAACGTTCGAAGCTCCAAATTG
AAGACTTCATCTGGTGAATTCGTACGTCCGATTACGAAGTTGGTTTCTCT
CGTCGATTGAGCGATGACTGAGCTATCGAAACAGCGTCTACAAATACGTG
TAGTGTATTATATGTTATTGAAAGAATGAATTGAAGTCATTCTATATTAT
GTTGTTGAAAGAATGAAATGAAGTCATTCTATTATATATCGTGTTGAAAG
AATGAATTGAAGTCATTCTATATTTCGTCGTCAAAAGAATGAATTGAAGT
CATTCTACGTGAAATGTTATCTTTCGATTTGATTCGTTTACTTGGATGAT
TTGCTAATTACGACAACATGCTTACCAGATTGATAATGATTGATTTCAGG
ACATAAGTATGAACTGATGCATACCTTCTTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00057048-exon-scaffold_285-1491911889:3091..4773 | TCONS_00057048-exon-scaffold_285-1491911889:3091..4773 | Clytia hemisphaerica | exon |
| TCONS_00057048-exon-scaffold_285-1510915933:3091..4773 | TCONS_00057048-exon-scaffold_285-1510915933:3091..4773 | Clytia hemisphaerica | exon |
| TCONS_00057048-exon-scaffold_285-1575043694:3091..4773 | TCONS_00057048-exon-scaffold_285-1575043694:3091..4773 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_285 | supercontig | scaffold_285:3091..4773 + |
Blast
The following BLAST results are available for this feature:
|
