TCONS_00057040 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057040
Unique NameTCONS_00057040
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length467

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057040 ID=TCONS_00057040|Name=TCONS_00057040|organism=Clytia hemisphaerica|type=transcript|length=467bp
CACAcgtacattttttatatttcatatataatagaatacccctttctcag
tgacccagtgaagttttgaaacccacCGAGTCTGACTATAGGGTCCCCAA
AACTCACTAAGTGATAACTTTTAACTTCGTCGGGTAGGGAAAAAGTAATT
TCAAGTAATATTCCAaggattcttaaaaaaaattaacgatTGTTGGCCGG
GGTAAGACCATAAATAAGATCTTTGATTTGGGTTCTATGTAATTTCTTTC
ACCGGGTTATCCATCAAGTGGagctgaccgggtcactgatatagGGAAAT
AGTAAAAATATTTGCATAAATAATCTCCGTGGATACAGTCGGGTGCATAA
ATGATTTTCCTGCCGTGTTTTAGTCAAGTTGACAATTAAGGGTCATGTCT
ACCTGAGAACGATCTCGATTATCGGTTCATCCAGTGGTTCCTATAAAAGA
CAACGAATGAATAAAAA
Run BLAST on NCBI

transcript from alignment at scaffold_284:1422120..1422586

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057040 ID=TCONS_00057040|Name=TCONS_00057040|organism=Clytia hemisphaerica|type=transcript|length=467bp|location=Sequence derived from alignment at scaffold_284:1422120..1422586 (Clytia hemisphaerica)
TTTTTATTCATTCGTTGTCTTTTATAGGAACCACTGGATGAACCGATAAT
CGAGATCGTTCTCAGGTAGACATGACCCTTAATTGTCAACTTGACTAAAA
CACGGCAGGAAAATCATTTATGCACCCGACTGTATCCACGGAGATTATTT
ATGCAAATATTTTTACTATTTCCctatatcagtgacccggtcagctCCAC
TTGATGGATAACCCGGTGAAAGAAATTACATAGAACCCAAATCAAAGATC
TTATTTATGGTCTTACCCCGGCCAACAatcgttaattttttttaagaatc
ctTGGAATATTACTTGAAATTACTTTTTCCCTACCCGACGAAGTTAAAAG
TTATCACTTAGTGAGTTTTGGGGACCCTATAGTCAGACTCGgtgggtttc
aaaacttcactgggtcactgagaaaggggtattctattatatatgaaata
taaaaaatgtacgTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035935XLOC_035935Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057040-exon-scaffold_284-1491911889:1422120..1422586TCONS_00057040-exon-scaffold_284-1491911889:1422120..1422586Clytia hemisphaericaexon
TCONS_00057040-exon-scaffold_284-1510915933:1422120..1422586TCONS_00057040-exon-scaffold_284-1510915933:1422120..1422586Clytia hemisphaericaexon
TCONS_00057040-exon-scaffold_284-1575043694:1422120..1422586TCONS_00057040-exon-scaffold_284-1575043694:1422120..1422586Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:1422120..1422586 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0415288	0	0	0	2.44442	1.73679	2.16795	2.33354	0.73493	0.709119	0	0.869574	0.438415	0.674466	0.20301	0.753672	0.126572	0.265606	0.566182	0.152964	0.25423	0.253428	0	0.390942	0.171736	1.92941	0.800224	0	0.245461	0.249657
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057040 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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