TCONS_00057027 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057027
Unique NameTCONS_00057027
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length234

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057027 ID=TCONS_00057027|Name=TCONS_00057027|organism=Clytia hemisphaerica|type=transcript|length=234bp
cattcaacaaaatcaaacgatagctgttcgattaccgtgCCTGATTtggt
aagaacattttttgattAGTATGATTATATAAGTTTGATGACgacagttt
tttatctgatgaagtttgattggtatTCAATGAGTTTGGTTTAAGAAAAA
GTTCGAGTTTTTCCTCCCCGATCCCGATGCCAGCCCAGGGAATGTCAACT
AAACCCTATCAaaccgattttcgttatcgaacca
Run BLAST on NCBI

transcript from alignment at scaffold_284:874795..875028

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057027 ID=TCONS_00057027|Name=TCONS_00057027|organism=Clytia hemisphaerica|type=transcript|length=234bp|location=Sequence derived from alignment at scaffold_284:874795..875028 (Clytia hemisphaerica)
tggttcgataacgaaaatcggttTGATAGGGTTTAGTTGACATTCCCTGG GCTGGCATCGGGATCGGGGAGGAAAAACTCGAACTTTTTCTTAAACCAAA CTCATTGAataccaatcaaacttcatcagataaaaaactgtcGTCATCAA ACTTATATAATCATACTaatcaaaaaatgttcttaccaAATCAGGcacgg taatcgaacagctatcgtttgattttgttgaatg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035922XLOC_035922Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057027-exon-scaffold_284-1491911889:874795..875028TCONS_00057027-exon-scaffold_284-1491911889:874795..875028Clytia hemisphaericaexon
TCONS_00057027-exon-scaffold_284-1510915933:874795..875028TCONS_00057027-exon-scaffold_284-1510915933:874795..875028Clytia hemisphaericaexon
TCONS_00057027-exon-scaffold_284-1575043694:874795..875028TCONS_00057027-exon-scaffold_284-1575043694:874795..875028Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:874795..875028 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 1.12164 3.29204 1.33591 1.05566 2.54721 1.19233 1.66956 3.10203 2.00727 0.659751 0.658833 3.42103 1.12502 0.603659 0 1.52445 1.05306 1.10195 1.91558 1.40153 0 2.06527 0 0 0 0 2.19903 1.12023
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057027 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top