TCONS_00057018 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057018
Unique NameTCONS_00057018
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length283

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057018 ID=TCONS_00057018|Name=TCONS_00057018|organism=Clytia hemisphaerica|type=transcript|length=283bp
CAACAACTTATAGTTACAGCTAAAAGATCAAACTTGTTTCGAAGTTCTTC
AAAGACAATCTTCCAACAACCATGGCTCAACAAGAAACTGGATCCAAATA
CGCCGTCAAACTTAAACCTGATTTTGATAATCCAAAATGGATCAACCGTC
ATAGATTCATGTTCAACTTTTTGGACATCAACGGCAACGGAAAAATCACT
TTGGACGAAATTGTCTCCAAAGCTTCAGATGACATTTGCGCCAAATTGAA
CGCAACACCAGAGCAAACCCAACGTCATCAAGA
Run BLAST on NCBI

transcript from alignment at scaffold_284:566742..567024

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057018 ID=TCONS_00057018|Name=TCONS_00057018|organism=Clytia hemisphaerica|type=transcript|length=283bp|location=Sequence derived from alignment at scaffold_284:566742..567024 (Clytia hemisphaerica)
TCTTGATGACGTTGGGTTTGCTCTGGTGTTGCGTTCAATTTGGCGCAAAT
GTCATCTGAAGCTTTGGAGACAATTTCGTCCAAAGTGATTTTTCCGTTGC
CGTTGATGTCCAAAAAGTTGAACATGAATCTATGACGGTTGATCCATTTT
GGATTATCAAAATCAGGTTTAAGTTTGACGGCGTATTTGGATCCAGTTTC
TTGTTGAGCCATGGTTGTTGGAAGATTGTCTTTGAAGAACTTCGAAACAA
GTTTGATCTTTTAGCTGTAACTATAAGTTGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035913XLOC_035913Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057018-exon-scaffold_284-1491911889:566742..567024TCONS_00057018-exon-scaffold_284-1491911889:566742..567024Clytia hemisphaericaexon
TCONS_00057018-exon-scaffold_284-1510915933:566742..567024TCONS_00057018-exon-scaffold_284-1510915933:566742..567024Clytia hemisphaericaexon
TCONS_00057018-exon-scaffold_284-1575043694:566742..567024TCONS_00057018-exon-scaffold_284-1575043694:566742..567024Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:566742..567024 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.476421	0	0.539816	0.534263	1.52433	0	0	0	0.529616	1.47727	0.989923	0	434.486	318.406	379.828	324.958	32.5266	42.9558	1.0111	0.156946	50.8385	39.8906	0	0	4.09229	13.9177	0	0	0.527854	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057018 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top