TCONS_00057008 (transcript) - C. hemisphaerica

Overview
NameTCONS_00057008
Unique NameTCONS_00057008
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length688

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00057008 ID=TCONS_00057008|Name=TCONS_00057008|organism=Clytia hemisphaerica|type=transcript|length=688bp
CTGCCAAAGAAAAAGGTGAAACTTTTGGCCTAAAAATTGAACAATATTGT
CTTAACCAGACCCCTCAACACTTCAAGACAAAGTGACTGTATGAAAGATT
ATTCAAAGCGAAAAGGAcaatattcttcatttttggacGATATCACTTCA
GACttaatttcttataaaagagtTAACACAAATGAGCTCTCCTCCTTTCG
AAACGTCTAAACAAAATCACCAAGGAAGGAGTGTGCACTCTAATTAATTT
GAAAGCTTGAAAGATTAGGAAGTAACAATTTCTAATATCGACTCGTCTCT
AGGCTAGTCAAATATACGATAATACTGCTTCTGTTTCTTGTTTCTGTTTA
GAAGCCACTGTAtttaatctttttgaaatatgcGACATCAGGATGGTGAT
TAGAGTCGTCACTTCCATCTTGCAGTGGAAAGAGAACAAGGAAAAAGGCG
TAATTTAAAACGAATAGATCGACAAAACTATCGATTCCACAGGCATAATC
GCCAAAACCATCAATTGGACAAGCAGAATCAATGAAAACCATCAATAAAA
CAAGGAAAATAACCATAACCATCAATAGAAGAAGCAAAAttaccaaaacc
atcaattcaaCAAGCAgaatcaccaaaaccatcaatagAACGAGCAGAAT
CAATGAAAACCATCAATTCAACAAGCAGAATCAATGAA
Run BLAST on NCBI

transcript from alignment at scaffold_284:391876..392563

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00057008 ID=TCONS_00057008|Name=TCONS_00057008|organism=Clytia hemisphaerica|type=transcript|length=688bp|location=Sequence derived from alignment at scaffold_284:391876..392563 (Clytia hemisphaerica)
TTCATTGATTCTGCTTGTTGAATTGATGGTTTTCATTGATTCTGCTCGTT
ctattgatggttttggtgattcTGCTTGttgaattgatggttttggtaaT
TTTGCTTCTTCTATTGATGGTTATGGTTATTTTCCTTGTTTTATTGATGG
TTTTCATTGATTCTGCTTGTCCAATTGATGGTTTTGGCGATTATGCCTGT
GGAATCGATAGTTTTGTCGATCTATTCGTTTTAAATTACGCCTTTTTCCT
TGTTCTCTTTCCACTGCAAGATGGAAGTGACGACTCTAATCACCATCCTG
ATGTCgcatatttcaaaaagattaaaTACAGTGGCTTCTAAACAGAAACA
AGAAACAGAAGCAGTATTATCGTATATTTGACTAGCCTAGAGACGAGTCG
ATATTAGAAATTGTTACTTCCTAATCTTTCAAGCTTTCAAATTAATTAGA
GTGCACACTCCTTCCTTGGTGATTTTGTTTAGACGTTTCGAAAGGAGGAG
AGCTCATTTGTGTTAactcttttataagaaattaaGTCTGAAGTGATATC
gtccaaaaatgaagaatattgTCCTTTTCGCTTTGAATAATCTTTCATAC
AGTCACTTTGTCTTGAAGTGTTGAGGGGTCTGGTTAAGACAATATTGTTC
AATTTTTAGGCCAAAAGTTTCACCTTTTTCTTTGGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035903XLOC_035903Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00057008-exon-scaffold_284-1491911889:391876..392563TCONS_00057008-exon-scaffold_284-1491911889:391876..392563Clytia hemisphaericaexon
TCONS_00057008-exon-scaffold_284-1510915933:391876..392563TCONS_00057008-exon-scaffold_284-1510915933:391876..392563Clytia hemisphaericaexon
TCONS_00057008-exon-scaffold_284-1575043694:391876..392563TCONS_00057008-exon-scaffold_284-1575043694:391876..392563Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:391876..392563 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.296265	0.505584	0.167723	0.246137	0.0998825	0	0.380896	0.534885	0.312071	0.30924	0.375195	0.345294	0.344814	0.971966	0.210286	0.225669	0	0.170969	0.236202	0.164779	1.14578	1.04789	0.59446	0.463244	0.159043	0.496798	0.203119	0.433548	0.164416	0.418784
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00057008 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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