TCONS_00056996 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056996
Unique NameTCONS_00056996
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length483

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056996 ID=TCONS_00056996|Name=TCONS_00056996|organism=Clytia hemisphaerica|type=transcript|length=483bp
tgaccaatggaattgcttcattctTCAACCgacaatgaccttacaaaaac
gttaaaaaaattTCGCTAATCTGGcgtgaaagtggagaccggccttgaTG
GGTTAAAAACAGTAcgatatatcttgtattttacatgtgcAAAGTATAac
ttgacgaaaagatgttgttgcatgtCACTTTGCTAGTGCCTTGCGCTTTT
TTCCAAcgcaaaaagtgcattttttataTCACCGATTTTAGTCGTTCCGT
AGGTTTCTGCAGGTCAATTATCTCAAACTACCTGTCAATAGTTTTTAATT
ACCCAGCAAAAGACTGTTAAATTTTCTTCATGATGATACGTTCTTGTTTT
GGTGTGGCAACCGATGTTGTATCAACGGAATCAGCCAGATTGGTATGGTG
TCCACTCGACGATGACACGCCCTCTTTTTTACGTTGTTTTTTGACTTCCT
CCTCGCAACGATTACGGAAGAAATAAATGATAC
Run BLAST on NCBI

transcript from alignment at scaffold_284:111506..111988

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056996 ID=TCONS_00056996|Name=TCONS_00056996|organism=Clytia hemisphaerica|type=transcript|length=483bp|location=Sequence derived from alignment at scaffold_284:111506..111988 (Clytia hemisphaerica)
GTATCATTTATTTCTTCCGTAATCGTTGCGAGGAGGAAGTCAAAAAACAA
CGTAAAAAAGAGGGCGTGTCATCGTCGAGTGGACACCATACCAATCTGGC
TGATTCCGTTGATACAACATCGGTTGCCACACCAAAACAAGAACGTATCA
TCATGAAGAAAATTTAACAGTCTTTTGCTGGGTAATTAAAAACTATTGAC
AGGTAGTTTGAGATAATTGACCTGCAGAAACCTACGGAACGACTAAAATC
GGTGAtataaaaaatgcactttttgcgTTGGAAAAAAGCGCAAGGCACTA
GCAAAGTGacatgcaacaacatcttttcgtcaagtTATACTTTgcacatg
taaaatacaagatatatcgTACTGTTTTTAACCCAtcaaggccggtctcc
actttcacgCCAGATTAGCGAaatttttttaacgtttttgtaaggtcatt
gtcGGTTGAagaatgaagcaattccattggtca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035891XLOC_035891Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056996-exon-scaffold_284-1491911889:111506..111988TCONS_00056996-exon-scaffold_284-1491911889:111506..111988Clytia hemisphaericaexon
TCONS_00056996-exon-scaffold_284-1510915933:111506..111988TCONS_00056996-exon-scaffold_284-1510915933:111506..111988Clytia hemisphaericaexon
TCONS_00056996-exon-scaffold_284-1575043694:111506..111988TCONS_00056996-exon-scaffold_284-1575043694:111506..111988Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:111506..111988 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	8.32815	10.3192	5.15185	3.4335	0.769029	3.60126	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.104559	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056996 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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