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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056978 ID=TCONS_00056978|Name=TCONS_00056978|organism=Clytia hemisphaerica|type=transcript|length=1762bp
AACAACAAACACTATGGATCAAAAGTTAACGGTTGCCCAGACAACATGAA
TCAAATTGAATTATGGAATAGCAAAAATTTGTAACTAATTTTAACTCTCT
TATGTTAGGGATCTGTTGACTTGATTTAAAGGagaatcttttttcatttc
ttttttttagagcaaaagatgaaaaagaaagcGCCGCAAACCGCCAGTTC
CGCTGTAAAAAAAATGAGCCCTGTGGTCAGCGGTATGATGATGACTGGCA
CCATCTTCGGGTCTGCTTCAATTTTACTCCCTGGGGTTGTCTCACAAGTC
GGGGTAGGCTCATTCTTTCTGATGCTATTTTTCTATTTGATATTGTCATA
CGCTTGTACAATGCTTGCAAATTACGTATTTGGTGATTTGTTAAGCAAAA
CCCCGGAAAATGACGAATCGTTGCGGAGACCATTACAATATTGCACTGAA
CGTGCATTTGGTAAGAAATCATGGCTCAATATGCTTTTTACTTGCATTCA
AATATCCAGCAACCTTTCCCTCGTCGTTTCGTGTACCATGTTTGCTgcta
ccattttagaatctgCATTGCCAATCTTGCCATTGAATTTAAATTCATCA
AACTTAACTCGCATTTGGCTACTTATAACATTTTTGGGACTGCTACCAAC
CCAAATGATCGGTTCTTTCAAAGAATTGGGTTTCGTTGGACCATCAGCTG
TTTTTTTCAGTGTGACTGCATTATTCTTGGTTATTGTATCAGGATACATA
GTGCAAGCAAATAATATCTTGCCGCCAGACCCTTTAACAAAGAGTGTCTT
AGAGAAAGCACTACCGTGGATAGACTACACACCACCATACACATTTTTCT
CAGTTTCTGGCACTATATTTTTCTCACTTGCTGGATATATGTTGGTATTA
CCGAGCCTGGCAGCTATAGATCCAGATACTGAATCTCTTAATAGGACAGT
CACAACATCAGCTATATGTGTTTATATATTATACTGTGCAGCAGGCTATG
TGACCTACTTATTATTCAGTGATTACGTCATCGAAGTTTCGATTGTTGAT
ACGATACAAAGGatagcgaagggagcagaaaaTTCTACTTTGTTGGTACT
TGCCAAGATCATCGAAGCTCTTTTGGTGCTCCACTTCGTTTGTGCTATAT
GTCTTGCTGGTAATCCGGTTTACTTGTACTTGGAATCCGTCTTCACAGTT
CCGAATGAATTTTGTTGGAAGCGGTTTATACTACGAACTCTCATTTTTGG
CGCTTGCAATTTGATTGTCATTGTATTTCCAAAACTTTCGCAATTCGTAT
CTTGGCTTGGTGGAGGATTTTTGTTCAATCTGGCGACATTCGTTCCAATC
ATTTTGTATTTATGTTTATGTGAAACTTCACTGACGACCAAAGTGTTCTG
TTGGTTTTTATTCACTTTATCGCTGGTGATTGCTATCGGAGTGAATTATG
TGGGACTGGCTGTTCTTTTATAAAGGAATTATAAAGGAAACTTACAACTT
ATGAAATCTTTAaactattaacttttcaaaataaagaaaatttattcaat
tcttgatttaaatttttagcttatCTTCGCTTTATTTGGTTAATTAAAAC
TGAGTTTTAGTTCTTAGGACTTTAAGTAGCGCTGTACATTCGATTTAGCG
ATCTTGCTGCCCTTTCATCATTTGATAATTTAGATATCAAGCCTTTTAAA
GATTAATATAAATACATTTCTAGATAAAGTCTAATTTTTTCGTGTGTAAA
AGCATACAGTAG Run BLAST on NCBI protein sequence of TCONS_00056978-protein >TCONS_00056978-protein ID=TCONS_00056978-protein|Name=TCONS_00056978-protein|organism=Clytia hemisphaerica|type=polypeptide|length=434bp
MKKKAPQTASSAVKKMSPVVSGMMMTGTIFGSASILLPGVVSQVGVGSFF
LMLFFYLILSYACTMLANYVFGDLLSKTPENDESLRRPLQYCTERAFGKK
SWLNMLFTCIQISSNLSLVVSCTMFAATILESALPILPLNLNSSNLTRIW
LLITFLGLLPTQMIGSFKELGFVGPSAVFFSVTALFLVIVSGYIVQANNI
LPPDPLTKSVLEKALPWIDYTPPYTFFSVSGTIFFSLAGYMLVLPSLAAI
DPDTESLNRTVTTSAICVYILYCAAGYVTYLLFSDYVIEVSIVDTIQRIA
KGAENSTLLVLAKIIEALLVLHFVCAICLAGNPVYLYLESVFTVPNEFCW
KRFILRTLIFGACNLIVIVFPKLSQFVSWLGGGFLFNLATFVPIILYLCL
CETSLTTKVFCWFLFTLSLVIAIGVNYVGLAVLL Run BLAST on NCBI transcript from alignment at scaffold_284:1346140..1348313- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056978 ID=TCONS_00056978|Name=TCONS_00056978|organism=Clytia hemisphaerica|type=transcript|length=2174bp|location=Sequence derived from alignment at scaffold_284:1346140..1348313- (Clytia hemisphaerica)
AACAACAAACACTATGGATCAAAAGTTAACGGTTGCCCAGACAACATGAA
TCAAATTGAATTATGGAATAGCAAAAATTTGTAACTAATTTTAACTCTCT
TATGTTAGGGATCTGTTGACTTGATTTAAAGGAGAATCTTTTTTCATTTC
TTTTTTTTAGAGCAAAAGATGAAAAAGAAAGCGCCGCAAACCGCCAGTTC
CGCTGTAAAAAAAATGAGCCCTGTGGTCAGCGGTATGATGATGACTGGCA
CCATCTTCGGGTCTGCTTCAATTTTACTCCCTGGGGTTGTCTCACAAGTC
GGGGTAGGCTCATTCTTTCTGATGCTATTTTTCTATTTGATATTGTCATA
CGCTTGTACAATGCTTGCAAATTACGTATTTGGTGATTTGTTAAGCAAAA
CCCCGGAAAATGACGAATCGTTGCGGAGACCATTACAATATTGCACTGAA
CGTGCATTTGGTAAGAAATCATGGCTCAATATGCTTTTTACTTGCATTCA
AATATCCAGCAACCTTTCCCTCGTCGTTTCGTGTACCATGTTTGCTGCTA
CCATTTTAGAATCTGCATTGCCAATCTTGCCATTGAATTTAAATTCATCA
AACTTAACTCGCATTTGGCTACTTATAACATTTTNAATCACCAGCAACCT
TTCCCTGGTTGTCTCTGCTACAATGATTGTTGCTACCATTTTAGAATCTG
CATTGCCAATCTTGCCATTGAATTTAAATTCATCAAACTTAACTCGCATT
TGGCTACTTATCACATTTTTGGGACTGCTACCAACCCAAATGATCGGTTC
TTTCAAAGAATTGGGTTTCGTTGGACCATCAGCTGTTTTTTTCAGTGTGA
CTGCATTATTCTTGGTTATTGTATCAGGATACATAGTGCAAGCAAATAAT
ATCTTGCCGCCAGACCCTTTAACAAAGAGTGTCTTAGAGAAAGCACTACC
GTGGATAGACTACACACCACCATACACATTTTTCTCAGTTTCTGGCACTA
TATTTTTCTCACTTGCTGGATATATGTTGGTATTACCGAGCCTGGCAGCT
ATAGATCCAGATACTGAATCTCTTAATAGGACAGTCACAACATCAGCTAT
ATGTGTTTATATATTATACTGTGCAGCAGGCTATGTGACCTACTTATTAT
TCAGTGATTACGTCATCGAAGTTTCGATTGTTGATACGATACAAAGGATA
GCGAAGGGAGCAGAAAATTCTACTTTGTTGGTACTTGCCAAGATCATCGA
AGCTCTTTTGGTGCTCCACTTCGTTTGTGCTATATGTCTTGCTGGTAATC
CGGTTTACTTGTACTTGGAATCCGTCTTCACAGTTCCGAATGGTATGTTT
TTCTCACGATTTCCTGTATTCGCAATCTTCGTTTATTATTCTTTGTCCTC
AAATCTTTTGAAATTAGTATCTTTGTCCACCCTAAATGGAGTTCAGTGAA
TTTCTATTTAGTAAAGTTATAAATTGTTCAAAGGTTGTATTTCAAAAGCC
GAACATGGGATAATCACGATACCATCGGATTTTAACTTCTTACTTTTATC
CTTACTGGTTTAGATTAATGTTATTCTACTAAAACATTTGTGATCAAAGG
TTTTAATATTTTCTCATAGAATTTTGTTGGAAGCGGTTTATACTACGAAC
TCTCATTTTTGGCGCTTGCAATTTGATTGTCATTGTATTTCCAAAACTTT
CGCAATTCGTATCTTGGCTTGGTGGAGGATTTTTGTTCAATCTGGCGACA
TTCGTTCCAATCATTTTGTATTTATGTTTATGTGAAACTTCACTGACGAC
CAAAGTGTTCTGTTGGTTTTTATTCACTTTATCGCTGGTGATTGCTATCG
GAGTGAATTATGTGGGACTGGCTGTTCTTTTATAAAGGAATTATAAAGGA
AACTTACAACTTATGAAATCTTTAAACTATTAACTTTTCAAAATAAAGAA
AATTTATTCAATTCTTGATTTAAATTTTTAGCTTATCTTCGCTTTATTTG
GTTAATTAAAACTGAGTTTTAGTTCTTAGGACTTTAAGTAGCGCTGTACA
TTCGATTTAGCGATCTTGCTGCCCTTTCATCATTTGATAATTTAGATATC
AAGCCTTTTAAAGATTAATATAAATACATTTCTAGATAAAGTCTAATTTT
TTCGTGTGTAAAAGCATACAGTAG Coding sequence (CDS) from alignment at scaffold_284:1346140..1348313- >TCONS_00056978 ID=TCONS_00056978|Name=TCONS_00056978|organism=Clytia hemisphaerica|type=CDS|length=3915bp|location=Sequence derived from alignment at scaffold_284:1346140..1348313- (Clytia hemisphaerica)
AATTTTGTTGGAAGCGGTTTATACTACGAACTCTCATTTTTGGCGCTTGC
AATTTGATTGTCATTGTATTTCCAAAACTTTCGCAATTCGTATCTTGGCT
TGGTGGAGGATTTTTGTTCAATCTGGCGACATTCGTTCCAATCATTTTGT
ATTTATGTTTATGTGAAACTTCACTGACGACCAAAGTGTTCTGTTGGTTT
TTATTCACTTTATCGCTGGTGATTGCTATCGGAGTGAATTATGTGGGACT
GGCTGTTCTTTTATAAATTTTTGGGACTGCTACCAACCCAAATGATCGGT
TCTTTCAAAGAATTGGGTTTCGTTGGACCATCAGCTGTTTTTTTCAGTGT
GACTGCATTATTCTTGGTTATTGTATCAGGATACATAGTGCAAGCAAATA
ATATCTTGCCGCCAGACCCTTTAACAAAGAGTGTCTTAGAGAAAGCACTA
CCGTGGATAGACTACACACCACCATACACATTTTTCTCAGTTTCTGGCAC
TATATTTTTCTCACTTGCTGGATATATGTTGGTATTACCGAGCCTGGCAG
CTATAGATCCAGATACTGAATCTCTTAATAGGACAGTCACAACATCAGCT
ATATGTGTTTATATATTATACTGTGCAGCAGGCTATGTGACCTACTTATT
ATTCAGTGATTACGTCATCGAAGTTTCGATTGTTGATACGATACAAAGGA
TAGCGAAGGGAGCAGAAAATTCTACTTTGTTGGTACTTGCCAAGATCATC
GAAGCTCTTTTGGTGCTCCACTTCGTTTGTGCTATATGTCTTGCTGGTAA
TCCGGTTTACTTGTACTTGGAATCCGTCTTCACAGTTCCGAATGATGAAA
AAGAAAGCGCCGCAAACCGCCAGTTCCGCTGTAAAAAAAATGAGCCCTGT
GGTCAGCGGTATGATGATGACTGGCACCATCTTCGGGTCTGCTTCAATTT
TACTCCCTGGGGTTGTCTCACAAGTCGGGGTAGGCTCATTCTTTCTGATG
CTATTTTTCTATTTGATATTGTCATACGCTTGTACAATGCTTGCAAATTA
CGTATTTGGTGATTTGTTAAGCAAAACCCCGGAAAATGACGAATCGTTGC
GGAGACCATTACAATATTGCACTGAACGTGCATTTGGTAAGAAATCATGG
CTCAATATGCTTTTTACTTGCATTCAAATATCCAGCAACCTTTCCCTCGT
CGTTTCGTGTACCATGTTTGCTGCTACCATTTTAGAATCTGCATTGCCAA
TCTTGCCATTGAATTTAAATTCATCAAACTTAACTCGCATTTGGCTACTT
ATAACAATTTTGTTGGAAGCGGTTTATACTACGAACTCTCATTTTTGGCG
CTTGCAATTTGATTGTCATTGTATTTCCAAAACTTTCGCAATTCGTATCT
TGGCTTGGTGGAGGATTTTTGTTCAATCTGGCGACATTCGTTCCAATCAT
TTTGTATTTATGTTTATGTGAAACTTCACTGACGACCAAAGTGTTCTGTT
GGTTTTTATTCACTTTATCGCTGGTGATTGCTATCGGAGTGAATTATGTG
GGACTGGCTGTTCTTTTATAAATTTTTGGGACTGCTACCAACCCAAATGA
TCGGTTCTTTCAAAGAATTGGGTTTCGTTGGACCATCAGCTGTTTTTTTC
AGTGTGACTGCATTATTCTTGGTTATTGTATCAGGATACATAGTGCAAGC
AAATAATATCTTGCCGCCAGACCCTTTAACAAAGAGTGTCTTAGAGAAAG
CACTACCGTGGATAGACTACACACCACCATACACATTTTTCTCAGTTTCT
GGCACTATATTTTTCTCACTTGCTGGATATATGTTGGTATTACCGAGCCT
GGCAGCTATAGATCCAGATACTGAATCTCTTAATAGGACAGTCACAACAT
CAGCTATATGTGTTTATATATTATACTGTGCAGCAGGCTATGTGACCTAC
TTATTATTCAGTGATTACGTCATCGAAGTTTCGATTGTTGATACGATACA
AAGGATAGCGAAGGGAGCAGAAAATTCTACTTTGTTGGTACTTGCCAAGA
TCATCGAAGCTCTTTTGGTGCTCCACTTCGTTTGTGCTATATGTCTTGCT
GGTAATCCGGTTTACTTGTACTTGGAATCCGTCTTCACAGTTCCGAATGA
TGAAAAAGAAAGCGCCGCAAACCGCCAGTTCCGCTGTAAAAAAAATGAGC
CCTGTGGTCAGCGGTATGATGATGACTGGCACCATCTTCGGGTCTGCTTC
AATTTTACTCCCTGGGGTTGTCTCACAAGTCGGGGTAGGCTCATTCTTTC
TGATGCTATTTTTCTATTTGATATTGTCATACGCTTGTACAATGCTTGCA
AATTACGTATTTGGTGATTTGTTAAGCAAAACCCCGGAAAATGACGAATC
GTTGCGGAGACCATTACAATATTGCACTGAACGTGCATTTGGTAAGAAAT
CATGGCTCAATATGCTTTTTACTTGCATTCAAATATCCAGCAACCTTTCC
CTCGTCGTTTCGTGTACCATGTTTGCTGCTACCATTTTAGAATCTGCATT
GCCAATCTTGCCATTGAATTTAAATTCATCAAACTTAACTCGCATTTGGC
TACTTATAACAATTTTGTTGGAAGCGGTTTATACTACGAACTCTCATTTT
TGGCGCTTGCAATTTGATTGTCATTGTATTTCCAAAACTTTCGCAATTCG
TATCTTGGCTTGGTGGAGGATTTTTGTTCAATCTGGCGACATTCGTTCCA
ATCATTTTGTATTTATGTTTATGTGAAACTTCACTGACGACCAAAGTGTT
CTGTTGGTTTTTATTCACTTTATCGCTGGTGATTGCTATCGGAGTGAATT
ATGTGGGACTGGCTGTTCTTTTATAAATTTTTGGGACTGCTACCAACCCA
AATGATCGGTTCTTTCAAAGAATTGGGTTTCGTTGGACCATCAGCTGTTT
TTTTCAGTGTGACTGCATTATTCTTGGTTATTGTATCAGGATACATAGTG
CAAGCAAATAATATCTTGCCGCCAGACCCTTTAACAAAGAGTGTCTTAGA
GAAAGCACTACCGTGGATAGACTACACACCACCATACACATTTTTCTCAG
TTTCTGGCACTATATTTTTCTCACTTGCTGGATATATGTTGGTATTACCG
AGCCTGGCAGCTATAGATCCAGATACTGAATCTCTTAATAGGACAGTCAC
AACATCAGCTATATGTGTTTATATATTATACTGTGCAGCAGGCTATGTGA
CCTACTTATTATTCAGTGATTACGTCATCGAAGTTTCGATTGTTGATACG
ATACAAAGGATAGCGAAGGGAGCAGAAAATTCTACTTTGTTGGTACTTGC
CAAGATCATCGAAGCTCTTTTGGTGCTCCACTTCGTTTGTGCTATATGTC
TTGCTGGTAATCCGGTTTACTTGTACTTGGAATCCGTCTTCACAGTTCCG
AATGATGAAAAAGAAAGCGCCGCAAACCGCCAGTTCCGCTGTAAAAAAAA
TGAGCCCTGTGGTCAGCGGTATGATGATGACTGGCACCATCTTCGGGTCT
GCTTCAATTTTACTCCCTGGGGTTGTCTCACAAGTCGGGGTAGGCTCATT
CTTTCTGATGCTATTTTTCTATTTGATATTGTCATACGCTTGTACAATGC
TTGCAAATTACGTATTTGGTGATTTGTTAAGCAAAACCCCGGAAAATGAC
GAATCGTTGCGGAGACCATTACAATATTGCACTGAACGTGCATTTGGTAA
GAAATCATGGCTCAATATGCTTTTTACTTGCATTCAAATATCCAGCAACC
TTTCCCTCGTCGTTTCGTGTACCATGTTTGCTGCTACCATTTTAGAATCT
GCATTGCCAATCTTGCCATTGAATTTAAATTCATCAAACTTAACTCGCAT
TTGGCTACTTATAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056978-exon-scaffold_284-1575043694:1347685..1348313 | TCONS_00056978-exon-scaffold_284-1575043694:1347685..1348313 | Clytia hemisphaerica | exon |
| TCONS_00056978-exon-scaffold_284-1575043694:1346972..1347549 | TCONS_00056978-exon-scaffold_284-1575043694:1346972..1347549 | Clytia hemisphaerica | exon |
| TCONS_00056978-exon-scaffold_284-1575043694:1346140..1346694 | TCONS_00056978-exon-scaffold_284-1575043694:1346140..1346694 | Clytia hemisphaerica | exon |
| TCONS_00056978-exon-scaffold_284-1510915933:1347685..1348313 | TCONS_00056978-exon-scaffold_284-1510915933:1347685..1348313 | Clytia hemisphaerica | exon |
| TCONS_00056978-exon-scaffold_284-1510915933:1346972..1347549 | TCONS_00056978-exon-scaffold_284-1510915933:1346972..1347549 | Clytia hemisphaerica | exon |
| TCONS_00056978-exon-scaffold_284-1510915933:1346140..1346694 | TCONS_00056978-exon-scaffold_284-1510915933:1346140..1346694 | Clytia hemisphaerica | exon |
| TCONS_00056978-exon-scaffold_284-1491911889:1347685..1348313 | TCONS_00056978-exon-scaffold_284-1491911889:1347685..1348313 | Clytia hemisphaerica | exon |
| TCONS_00056978-exon-scaffold_284-1491911889:1346972..1347549 | TCONS_00056978-exon-scaffold_284-1491911889:1346972..1347549 | Clytia hemisphaerica | exon |
| TCONS_00056978-exon-scaffold_284-1491911889:1346140..1346694 | TCONS_00056978-exon-scaffold_284-1491911889:1346140..1346694 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_284 | supercontig | scaffold_284:1346140..1348313 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013057 | AA_transpt_TM |
Blast
The following BLAST results are available for this feature:
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