TCONS_00056943 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056943
Unique NameTCONS_00056943
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1958

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056943 ID=TCONS_00056943|Name=TCONS_00056943|organism=Clytia hemisphaerica|type=transcript|length=1958bp
TTCATATATACAATACTTGGAGGCCACGGTATCATTTTCTTATTGTTTTA
GTGGGTAAAAGACGATAAATATTCTCATAAACTAAAAAACCATGGCTGCT
CCTATACAACAAATTTCAAATGGCGCTATACCAATTATGTCTGGTGTTGC
AGGAACTCCAGTTCAACAGCCAGCTGTTGTttaccaacaacaacaaccaa
tgATTGTCGCAGGTGCTGCTCCGATGGGTTACGCACCACGAAAGCCCTAC
ATCAGGAATCCGAATGAGGAGCATTGCAAAATCTTTGTCGGAGGTGTTGG
TAAATTGACAAATGATGAATCTCTTAGAGCCTACTTTGGAAAATTCGGAG
AAATTGCAGATAGTGTTATAATGAAAGATAAACATACAAATGAGCCAAGA
GGGTTTGCATTCGTCACATTCAAAACACCAGAAGCTGTTTCAGCTGTCAT
TGAACAAAATAATAAAGGTGGACATACTCTTGATGGAAAAATGTTTATTG
AAGTACGAAAGTTCCAGAGAAAATCTGAGtatgACCCAGATAAGGCCAAC
ACAACTCTTACTACTGCCAATGGTGCTGCACAACTTAACTTTCAATACAA
AGGTCCAATGAAGTGCTCACCAGAAATGAAAGTTTTTGTTGGTGGAATTG
GTATTGGTACAACAGAGGATGatgtaaagaaatattttgaacaatttgGA
AAGGTCCTTGCTGTCGATATGCCTGTTCATCATGTGTATAAATGTCCCAA
AGGCTTTGCATTTGTTGGATTTGAGACATTTGATGTAGTTGCAGCTGTAA
CAAAAGATCGATATCATCAGATAAATGGAAAAACGGTCGAAGTAAAAGGC
TCAGATGAGCAGCAAGCACATTTGAACAAAAAGAAGGCTGAAGCTATCCG
GTATGCTTCTGCTGGAAGAGGTAGAGGAATTGGATCAGGAAATATTGGAA
CAGTGACAGGATACGGTGCATATGCAAACCTTGGTCAACCATTAATCGTA
AACCCTGCTCAACATAGTGTACAATATACAGtTCCTGCTGCAGCAACTGG
TGGATATGTGTATGATCCCGCATCTAATACGTATTATCAACTCCCTGGAA
CTGTCGTCGCTGGTGGTGCAGTTGCAGGTGCAGTGCAAACGGTAGGAACC
TCAGTCGCAGCTGCCTCCCCATACGCTGGTGCAACCATCGCAGCAGGTCA
ACAAGTCTTAACTTCTCCACAAGTTGGTCAGCGAACGTTACAAGCAACTG
ATATGATCCAAGGACTAGCAGCAGGCTCAACAGTTGCCTTGGGCGCAGCG
TATCCAAGCGAAACATCAACCTTTGGGCCAACTCGACATAACGTGATCGG
AGCCAGTGCGCAACAACCGATGGCAGGAAACACAGTCGCCGATCCTCACG
TCGTCTATTCTACAGCAACATCTATTTCTGCTGGCGATGCTGCTTTGTCA
GCGGCTCGTGGTTACCACCCTTATGGAAGATAAGATATTGAacttcaaaa
ctgaaaaaagagaCTTCAATCGTACTTTGATCTGTACGTAAAGAAGAAAG
CTTTGAAAGACTCGATCTTCACTCATGGACAGcgattttgtaaataaaaa
cttttttaatctattgattgattgatgctTTGTCAGTTGGTTCTTCGATA
CGTGATAATCATATTGCTCTTTGGTGACAATTCGGTTTTataaatgaaaa
gacattttattGGATTTGTCTACGCCATGCACAATGGATGTAGATATTTT
ACGCGATAATTTCATTTGAATGAACAATTTTTAACGTGAGAACTTTATGG
ACATGCGCGatatttctctctttttatttgaaagaaaatttattcaatgg
aattacaaaatattttgattgtttatccatttcttatttttttatcgGAA
TTTTCTTTACTTACTATTGAGTCCACTTCCACATCAGCTTAGTTTGAGAT
GTGTAGGG
Run BLAST on NCBI

transcript from alignment at scaffold_284:879845..888711-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056943 ID=TCONS_00056943|Name=TCONS_00056943|organism=Clytia hemisphaerica|type=transcript|length=8867bp|location=Sequence derived from alignment at scaffold_284:879845..888711- (Clytia hemisphaerica)
TTCATATATACAATACTTGGAGGCCACGGTATCATTTTCTTATTGTTTTA
GTGGGTAAAAGACGATAAATATTCTCATAAACTAAAAAACCATGGCTGCT
CCTATACAACAAATTTCAAATGGCGCTATACCAATTATGTCTGGTGTTGC
AGGAACTCCAGTTCAACAGCCAGCTGTTGTTTACCAACAACAACAACCAA
TGATTGTCGCAGGTGCTGCTCCGATGGGTTACGCACCACGAAAGCCCTAC
ATCAGGAATCCGAATGAGGAGCATTGGTAANTTACGCACCACGAAAGCCC
TACATCAGGAATCCGAATGAGGAACATTGGTAAGGGAGCTTTTGAAAAAT
TGACTTTTTAATTTATCCATTATACAGTTATACTTGAAAAAAAGAGCTCT
GGGAAAATAACCATTGTGTCTTCAAAAGACCAACTGTATTAGTTCCATAG
GGAAAAATTCATGGTTGTTGGACTTGCAAATACGTGTGTCAGTGTACCAA
TCAAAGGAAATTCGTTTTTACCAATGTTACTTTTTTCTATATCTAAAGAA
TTAGTAAACGTTTTAAAATCTGTAAAAAGCTCTCTACTCCCAAATAGTTC
TAGATTACCAGACAATCTCAATCAAACAGAATCGACGATCGAACCAGTCG
AATGCAATCGAATCTCAATCGAGCGTCAAAATTCTGGGTAATATTCGATA
GGTTCGATTGTTGTTCAACTGGTTCGATTGTCGTTCAACTACATTCGATT
GTTTGAGTGAAACAAGGCATGTCCTAAATATATTTTGCGTGATGCGCACC
GCTTCCCGTTATTCCTCCTTAACTCTCATATATAGCTCAAAAGAATCGAA
TCAACAAGAGGATTTCGAAAAGGGTCAGCTTTTTAACAAAGATTAGTCTC
TCTAAGGGTCAGGTCCTAATCAAACGCAATCGAACATCAATCGAACGCAA
TCGAATATCAATTGAATCTGAAAATTGTGAGATTCAATCGCGTTCGACAA
TCGAATTTCAATCGGTCGATTGCGTTCGATTTGGTTCGACTGGTTCGATC
GTCGATTCCATTTGATTGAGATCGTCTGGAGATGAAACCCTGCAAAAACC
ATGTTCAATCTTATCGTTTCGTTGGTATTGGAAACCAAGGAAATTCGCAA
AAAATTTATTTCTCCCTTTTTTAGCAAAATCTTTGTCGGAGGTGTTGGTA
AATTGACAAATGATGAATCTCTTAGAGCCTACTTTGGAAAATTCGGAGAA
ATTGCAGATAGTGTTATAATGAAAGATAAACATACAAATGAGCCAAGGTA
AGTGTCAGCATAAACATATAAACAACTGGACATCCATCTCCTTTCTTGTA
TTTTTGAAGATAACACTGCTAGCTTCGTTGCCGCCTCATTAAAATCATAA
AACCTAACAATAAATTTTGGTATACCTCTTGGGAATACCTTGGTAAAACC
TCAAAACTTCAACAAAAGTCTCTGTTGTTCTACTCTTCTCAAGTCTTATC
TATATCATAACCAAGATAACTGAGGCAAAATCATTGTCAGCTTGTCAAAA
TTCTGACTAATATTTTTAAATTTAGACTCAAAAGTATGGAATAATTTTAG
AGAGTATGGGATTCAAATTATGATAATCTCATGGTACAGGCTCTCAACTT
TGGCGTACTATTTTTTTCATGTCATAAAAAAATTATTAGAGTGACAAAAG
GGATGCAAAAGTATACACGCAGTTGATAAAATACTTATGCAATGTCAAGC
TCTATCAATCCTTTTACCTTAGTAATTCCAATAAAATGAAATTGTGACGG
AATATTGTAGAATTTTATATATCAATCAGGGCTGCAAATAAGCATCGGTC
ATCGGTCAATGTCCGACTGAAAAAGCCATTTGACCGACTGAAAATCATTT
GTGTCGGTCATGATGTCCGAATGAAAAAAAAACATTAATTTGAGTTGAAA
ACAAATCTTTCACACCCCTGTCTCTTTGTCTATTATTACTACTCTTTTAC
TTTCTTTTAGCTTTCAAGAGTGTTTCTAAAGTTTACTTTGATTTCATGCG
TTTTTATTTTTATCGACTTGCTTTCTTTGTAACTTTCATCAGTGTTTCTA
AGTTCACTTTTTATTGACTTGCTATCTTTGTAAACTTTCAAGAGTGTTTA
TAAGTTCACTTTTTATCAACTTGCTTTCTTCGTAACTTTCAAGAGTGTCT
CTAAGCTCACTTTTATCAACTCGTTATCGTTGTAACTTTCAAGGGTCTTT
CTAAGTTCACTTATATCGCATTGCTTTCTTCGTAACTTTAGAAGTTCCAA
GGTCACTTTTACCTACTCTCTTTCTCCATAACTTTCAAGACTGTATGATT
TCAGAAAACTTATAGACTGAATGACCGACAGGATTTAGAGCTTGACCGAC
AGAATTTCATCTCAGTCCCGACATGATGTCTGATTGACTAGAAATATTTA
TTTGCAGCCCCGATCAATTTTTTAATACAGTGGGTAACAAAGCTCGCTTC
AAAGACACAATGGAAGATAGTCGTCCAGTCGTTTATATGTTCAGACAAAA
AATTTGAGCCTTGCTAACAGTATCTTATGAAAAACTTTGTTTTAAAAAAC
GTTTTAAATTAAAAAAGCAATGGTGAAATGCTGAGTCAGCAGAAAAGTAA
ATTGCTGTTTTTGGAAGGAACTTATGCATTGAGCAATGATCATCTAAAAA
AATTACTTTCCAAAACTCCAAAAAAGAGCAATAATTGCTGTTTTTATCTC
ATATACCCCACTGTATATTTTCAGACTGAAGAGAAAAACCCTTTTCTTTT
GTTATTTCATGATATCTTTTACCTGTTCATTAATTTCACAGAGGGTTTGC
ATTCGTCACATTCAAAACACCAGAAGCTGTTTCAGCTGTCATTGAACAAA
ATAATAAAGGTGGACATACTCTTGATGGAAAAATGGTAGGTTGTAATGTC
TGAAAGAAACTCTACATTATATAATGACAAGAAAAAAATGACGTTTCTAT
AAGAGAATCATTCTGTGTTTTTTATACATTTTGGCACACCTGCAATATTG
CCAATATATTGAAGTAGTTTTGGTTTCATTTTTAAAACTTAATTTGGTTG
CTTCATACAGAGAAGTAGGATGAAATAGAAAACCAGCTTCCTTGACTACC
CCATGCCTTTGTTTTAGCTTTATTAATAAGGTTAGTTTGATTAGGAAAAG
TTGAAGAAAAGATGGCTTGTCCTAAAAATGGCTGGCCATAAAAGTGGATT
TGCGTTTTACATTTGTGCACCTACCTGCTTTTCAATAAGATGTGCGCAAT
CCCGTGTGAAGTAGCAAATTTTACACCATTTTATTGCCTAAAAATTCTCG
TTGTAATGATATTGATTTGTTTCAATAATATTTGGTCCAGTTTCGGGGAA
AGCAATCATTAGAATTGTTAATGTTAGGATATTGTGAGCAAGAAAATAGG
TATCTTGTGGTCTGAGTGAGGTGTTCCCAAAATATAAGCCCCTAAAGTTT
AAGCCTAATTAGACTCAAACAAAAGACTTCCACCACATCACCTCCCTTAA
GGGCAAAGGACCTGGTACATGACGAGCCGTGTCTTCAAGAAGCTGTTTTT
CTATCTCATTGCACTTCTCTGCTTCATATCTTTGATATCTGGGTTGAAAG
AAAAATTATAAAAAATTATATTTTGTTTGTATTGAGCCTTTCACTGACAC
TGCTGAGATGGATTGAAAATATGTTATTTTGAGTTTGGAACAGGTTGGAA
ACATTTGTTTGAGGCTAGGAAGGTCTGGAAGATAAAAGAGTTCTTTTTTC
TTTCCTTTACATAGTTTATTGAAGTACGAAAGTTCCAGAGAAAATCTGAG
GTGAGATCAAGTTTCTGACTTCATTATTGTTGTTATTCTTTGAAGGTTGA
TCCTAAGCCAGCTGTCCCTCAAGGTCCTGGAGTTCAAAATAAACCCTTGG
TAAGTTTTTTAAGTCAGTCGATCTCTGGATCTTTGATATTAATGCCCTAT
CTACTTGATTTTTACTGAATGACACAAGATGAGTCTTAGACTTTTGTTTA
TTTATTTTTTGTCTCATTACAGTTTTTGAATATTTTTCATTTTCAGTATG
ACCCAGATAAGGCCAACACAACTCTTACTACTGCCAATGGTGCTGCACAA
CTTAACGTAAGAATTAAAAATCTTGGTATCAATATTGTTACATTTTGCAT
GCAAGTCAGTTTCAAATTATGTCTAAATCAGCAATGCCCTCAATTGAAGT
TGATAAATGCTTTGCTATGACCACTGGTGTTTGATCAATAATTTAAATCA
AAACTTTTCTTTCTTGAACAGTTTCAATACAAAGGTCCAATGAAGTGCTC
ACCAGAAATGAAAGTTTTTGTTGGTGGAATTGGTATTGGTACAACAGAGG
ATGATGTAAAGAAATATTTTGAACAATTTGGAAAGGTAATTTGAACTTTT
TTCTCTTCAAATACTCCTTCAAAATTAAAAAAACAAGGAATGTTTTGAAA
ATAAGACATTTAAAAATCTTAATTTCTTATCCTTCAGGTCCTTGCTGTCG
ATATGCCTGTTCATCATGTGTATAAATGTCCCAAAGGTATGTTTATTATT
CAGAATTTCGGACTTTATGCCCCTCAAATATCCAAGTTTACGAAAATCAC
CATATTTTTTGATCCACACAAAAACAATTAACAATGCAAAAAAGTTTAAC
CCACGCAAATAAATTTTTGAACTTCGCAAAAAAAAATTTGACCGTCCATA
AAAAAATTCTACCCACATGTCCATTCAACCCAAGCACCCACTCAACCCAC
ACCCGTCAAATCCATACCAGGGTAGAATAACTGATTTTAGAGAGGGCTAA
CTAACTGTGATTTAAAACTTAATCATTTTCCTTTCCAACAATTTGTTGAC
TAGGCTATAAAAAAAAAAAAATTCTATCAATTCATTTTCTGCTACATCTG
GTTGTAATCATACTTACAAATTCCTTAAAATTTTGTTTTGGTATATATGT
TTTTGATAAGGGATATGGTTATGAAGTATAAGCTTTTCTTGGACGGGTAA
CTGACCTCAACTTGTCCGTGCACAAGATTACTATCATCCCTATTACTATT
TTCAGCTTTCTATCTGCTTGAGCCAATTTTATTTTATATTGATTTATAAT
TAGTAGAAACCTAGTTGCACACCTTTGCATTTAACTCTAGACAAAATATA
TTGACAGAACTCATATATTTTAGATGTTTAAATATTTACAATTAATGAAA
AATAGCCACAGCACAACTTAGCCTGTTTTTTAAGTAACCAAAATATTATA
TTTGAGATCAGAATATTAACATTTTGAATAACATTTGACATTACTAGAAT
TTTTGACCTTCAAAATCTAAAAATATATACATCATTTTATGATTTTATAC
TTAAAAGTATTTTAACTAAGAACTTAATAGTCCCATATGCCATTAATCAA
TGTTTTTGAATGTATGAATTTACTATGTCTTCTTTTTAGCAAAATATTTC
TAATTTATGATTACCTAATTAGGCTTTGCATTTGTTGGATTTGAGACATT
TGATGTAGTTGCAGCTGTAACAAAAGATCGATATCATCAGATAAATGGAA
AAACGGTGTGATATAAAATATTTTAATGTTGTTTTACCAATTATTTTTTC
AATTCTTCGTAATTTATAATCAATATTTTTAAAAAGTTTCAGGTATTTTC
ACTATTTTGACTGACACTGTAACTAATTTTAGTTCAGCTCTTTTCAGAAA
TTTTACCACTATTTTTCTGTTTGTTTCTAGCCTTAGACTTTAATATTGTT
TGAATGTTATTTTGCAATCATTTGTTCAGTATTTTTGTTTTTCTGAAAAG
CTAATTTTTGCTTATTTTTTAGATTTTAAAATTTGCCTTTTTTCAGTCAG
TNTTATATTGATTTATAATTAGTAGAAACCTAGTTGCACACCTTTGCATT
TAACTCTAGACAAAATATATTGACAGAACTCATATATTTTAGATGTTTAA
ATATTTACAATTAATGAAAAATAGCCACAGCACAACTTAGCCTGTTTTTT
AAGTAACCAAAATATTATATTTGAGATCAGAATATTAACATTTTGAATAA
CATTTGACATTACTAGAATTTTTGACCTTCAAAATCTAAAAATATATACA
TCATTTTATGATTTTATACTTAAAAGTATTTTAACTAAGAACTTAATAGT
CCCATATGCCATTAATCAATGTTTTTGAATGTATGAATTTACTATGTCTT
CTTTTTAGCAAAATATTTCTAATTTATGATTACCTAATTAGGCTTTGCAT
TTGTTGGATTTGAGACATTTGATGTAGTTGCAGCTGTAACAAAAGATCGA
TATCATCAGATAAATGGAAAAACGGTGTGATATAAAATATTTTAATGTTG
TTTTACCAATTATTTTTTCAATTCTTCGTAATTTATAATCAATATTTTTA
AAAAGTTTCAGGTATTTTCACTATTTTGACTGACACTGTAACTAATTTTA
GTTCAGCTCTTTTCAGAAATTTTACCACTATTTTTCTGTTTGTTTCTAGC
CTTAGACTTTAATATTGTTTGAATGTTATTTTGCAATCATTTGTTCAGTA
TTTTTGTTTTTCTGAAAAGCTAATTTTTGCTTATTTTCTAGATTTTAAAA
TTTGCCTTTTTTCAGTCAGTCATTATTCAGTATTACTGTTCTAAACTGAA
TTTTGAGATTGGTTTATTTTGTTGTAGGTCGAAGTAAAAGGCTCAGATGA
GCAGCAAGCACATTTGAACAAAAAGAAGGCTGAAGGTATGAGTGAGTACC
AGAACTTTCTTATTATTTTAATGATTACCTTTCGAATGCTCAAATACTGA
TTCTCGTCTACGGGAAGGGTTTTTTTCAAATGACCTTCTTGATTTATTTG
CGAATTAAATACCTTAAGGAAAGAAATTTTTGTGGAACAAGTTTTTGACA
AATCCGCGAAATAAGAATATTATCATGATTTAGACAGGTTTAGAAAATAA
CCTATAGTATTAGTGTTTTTGGGGCAGAATAAGCCATATTTAAACAAAAA
TTTGTCTCAACCGCAAAATTAAATTCTGTGAAACTTCTGAATTTTGAGCT
GTGAACTGCGAAATTAAATTCCACAAAAATTTTTTTCCGCAGAGATTTCT
TCCCTTAAGGTAACAACAAACAAGGAATTGAAATGAATTTATCTTAAATA
TTTTGCTTTTTTTTCAGCTATCCGGTATGCTTCTGCTGGAAGAGGTAGAG
GAATTGGATCAGGAAATATTGGAACAGTGACAGGATACGGTGCATATGCA
AACCTTGGTCAACCATTAATCGTAAACCCTGCTCAACATAGTGTACAATA
TACAGGTAAGAAGTTAGTTAGCAAAACATATTTGCTATAAGCCTTAAATA
TCAACACTGATCACACCTTGGTAAAAGGATTAATGAATTATAGACAAAAG
TATGTTAATTAGGGTTTAAACTGGTGTAAATAATGTTTTTTTTTTTTTTC
AACCTGATAAAAAAAGAAATAAAATAATTGATTCGACAAATCCTTTTGAA
CCTTCAGTTGCTTTTTCATTACTATTTTGTTTTTTTCTCAGTTCCTGCTG
CAGCAACTGGTGGATATGTGTATGATCCCGCATCTAATACGTATTATCAA
CTCCCTGGAACTGTCGTCGCTGGTAAGACTATCACTCAAATTTACCAGAT
GAATGCACGTCAAAATATTTCAAAACCTTATTTTATAAAAAATTACTCAA
TAGTAGGTTTTAAAATAGATCACTCTTTGGTATCTGGTCAAAAATATAAG
CTCGATAAAATCGCGAAATTTAATCCCCGTTAAAGTTTATCCCATTAAAG
TAGTAACAAAATATTTCTGTAATTAACAGGTGGTGCAGTTGCAGGTGCAG
TGCAAACGGTAGGAACCTCAGTCGCAGCTGCCTCCCCATACGCTGGTGCA
ACCATCGCAGCAGGTCAACAAGTCTTAACTTCTCCACAAGTTGGTCAGCG
AACGTTACAAGCAACTGATATGATCCAAGGACTAGCAGCAGGCTCAACAG
TTGGTAAGTGAGTAATCTACGTAAGTCATCTCTTGAGAATAACTTTTAAA
AGTTTGAGTGTCCAAAAGTTCTAAGTAAACATCATAGATCAATAACAGTA
CTTTGTATGTATATGATATTATCAATCATATTATCATATTTTTAGCCTTG
GGCGCAGCGTATCCAAGCGAAACATCAACCTTTGGGCCAACTCGACATAA
CGTGATCGGAGCCAGTGCGCAACAACCGATGGCAGGAAACACAGTCGCCG
ATCCTCACGTCGTCTATTCTACAGCAACATCTATTTCTGCTGGCGATGCT
GCTTTGTCAGCGGCTCGTGGTTACCACCCTTATGGAAGATAAGATATTGA
ACTTCAAAACTGAAAAAAGAGACTTCAATCGTACTTTGATCTGTACGTAA
AGAAGAAAGCTTTGAAAGACTCGATCTTCACTCATGGACAGCGATTTTGT
AAATAAAAACTTTTTTAATCTATTGATTGATTGATGCTTTGTCAGTTGGT
TCTTCGATACGTGATAATCATATTGCTCTTTGGTGACAATTCGGTTTTAT
AAATGAAAAGACATTTTATTGGATTTGTCTACGCCATGCACAATGGATGT
AGATATTTTACGCGATAATTTCATTTGAATGAACAATTTTTAACGTGAGA
ACTTTATGGACATGCGCGATATTTCTCTCTTTTTATTTGAAAGAAAATTT
ATTCAATGGAATTACAAAATATTTTGATTGTTTATCCATTTCTTATTTTT
TTATCGGAATTTTCTTTACTTACTATTGAGTCCACTTCCACATCAGCTTA
GTTTGAGATGTGTAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035868XLOC_035868Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056943-exon-scaffold_284-1575043694:888436..888711TCONS_00056943-exon-scaffold_284-1575043694:888436..888711Clytia hemisphaericaexon
TCONS_00056943-exon-scaffold_284-1575043694:887415..887537TCONS_00056943-exon-scaffold_284-1575043694:887415..887537Clytia hemisphaericaexon
TCONS_00056943-exon-scaffold_284-1575043694:885777..885870TCONS_00056943-exon-scaffold_284-1575043694:885777..885870Clytia hemisphaericaexon
TCONS_00056943-exon-scaffold_284-1575043694:884862..884897TCONS_00056943-exon-scaffold_284-1575043694:884862..884897Clytia hemisphaericaexon
TCONS_00056943-exon-scaffold_284-1575043694:884556..884615TCONS_00056943-exon-scaffold_284-1575043694:884556..884615Clytia hemisphaericaexon
TCONS_00056943-exon-scaffold_284-1575043694:884277..884390TCONS_00056943-exon-scaffold_284-1575043694:884277..884390Clytia hemisphaericaexon
TCONS_00056943-exon-scaffold_284-1575043694:884126..884174TCONS_00056943-exon-scaffold_284-1575043694:884126..884174Clytia hemisphaericaexon
TCONS_00056943-exon-scaffold_284-1575043694:882338..882420TCONS_00056943-exon-scaffold_284-1575043694:882338..882420Clytia hemisphaericaexon
TCONS_00056943-exon-scaffold_284-1575043694:881927..881984TCONS_00056943-exon-scaffold_284-1575043694:881927..881984Clytia hemisphaericaexon
TCONS_00056943-exon-scaffold_284-1575043694:881357..881494TCONS_00056943-exon-scaffold_284-1575043694:881357..881494Clytia hemisphaericaexon
TCONS_00056943-exon-scaffold_284-1575043694:881040..881120TCONS_00056943-exon-scaffold_284-1575043694:881040..881120Clytia hemisphaericaexon
TCONS_00056943-exon-scaffold_284-1575043694:880659..880832TCONS_00056943-exon-scaffold_284-1575043694:880659..880832Clytia hemisphaericaexon
TCONS_00056943-exon-scaffold_284-1575043694:879845..880516TCONS_00056943-exon-scaffold_284-1575043694:879845..880516Clytia hemisphaericaexon
TCONS_00056943-exon-scaffold_284-1510915933:888436..888711TCONS_00056943-exon-scaffold_284-1510915933:888436..888711Clytia hemisphaericaexon
TCONS_00056943-exon-scaffold_284-1510915933:887415..887537TCONS_00056943-exon-scaffold_284-1510915933:887415..887537Clytia hemisphaericaexon
TCONS_00056943-exon-scaffold_284-1510915933:885777..885870TCONS_00056943-exon-scaffold_284-1510915933:885777..885870Clytia hemisphaericaexon
TCONS_00056943-exon-scaffold_284-1510915933:884862..884897TCONS_00056943-exon-scaffold_284-1510915933:884862..884897Clytia hemisphaericaexon
TCONS_00056943-exon-scaffold_284-1510915933:884556..884615TCONS_00056943-exon-scaffold_284-1510915933:884556..884615Clytia hemisphaericaexon
TCONS_00056943-exon-scaffold_284-1510915933:884277..884390TCONS_00056943-exon-scaffold_284-1510915933:884277..884390Clytia hemisphaericaexon
TCONS_00056943-exon-scaffold_284-1510915933:884126..884174TCONS_00056943-exon-scaffold_284-1510915933:884126..884174Clytia hemisphaericaexon
TCONS_00056943-exon-scaffold_284-1510915933:882338..882420TCONS_00056943-exon-scaffold_284-1510915933:882338..882420Clytia hemisphaericaexon
TCONS_00056943-exon-scaffold_284-1510915933:881927..881984TCONS_00056943-exon-scaffold_284-1510915933:881927..881984Clytia hemisphaericaexon
TCONS_00056943-exon-scaffold_284-1510915933:881357..881494TCONS_00056943-exon-scaffold_284-1510915933:881357..881494Clytia hemisphaericaexon
TCONS_00056943-exon-scaffold_284-1510915933:881040..881120TCONS_00056943-exon-scaffold_284-1510915933:881040..881120Clytia hemisphaericaexon
TCONS_00056943-exon-scaffold_284-1510915933:880659..880832TCONS_00056943-exon-scaffold_284-1510915933:880659..880832Clytia hemisphaericaexon
TCONS_00056943-exon-scaffold_284-1510915933:879845..880516TCONS_00056943-exon-scaffold_284-1510915933:879845..880516Clytia hemisphaericaexon
TCONS_00056943-exon-scaffold_284-1491911889:888436..888711TCONS_00056943-exon-scaffold_284-1491911889:888436..888711Clytia hemisphaericaexon
TCONS_00056943-exon-scaffold_284-1491911889:887415..887537TCONS_00056943-exon-scaffold_284-1491911889:887415..887537Clytia hemisphaericaexon
TCONS_00056943-exon-scaffold_284-1491911889:885777..885870TCONS_00056943-exon-scaffold_284-1491911889:885777..885870Clytia hemisphaericaexon
TCONS_00056943-exon-scaffold_284-1491911889:884862..884897TCONS_00056943-exon-scaffold_284-1491911889:884862..884897Clytia hemisphaericaexon
TCONS_00056943-exon-scaffold_284-1491911889:884556..884615TCONS_00056943-exon-scaffold_284-1491911889:884556..884615Clytia hemisphaericaexon
TCONS_00056943-exon-scaffold_284-1491911889:884277..884390TCONS_00056943-exon-scaffold_284-1491911889:884277..884390Clytia hemisphaericaexon
TCONS_00056943-exon-scaffold_284-1491911889:884126..884174TCONS_00056943-exon-scaffold_284-1491911889:884126..884174Clytia hemisphaericaexon
TCONS_00056943-exon-scaffold_284-1491911889:882338..882420TCONS_00056943-exon-scaffold_284-1491911889:882338..882420Clytia hemisphaericaexon
TCONS_00056943-exon-scaffold_284-1491911889:881927..881984TCONS_00056943-exon-scaffold_284-1491911889:881927..881984Clytia hemisphaericaexon
TCONS_00056943-exon-scaffold_284-1491911889:881357..881494TCONS_00056943-exon-scaffold_284-1491911889:881357..881494Clytia hemisphaericaexon
TCONS_00056943-exon-scaffold_284-1491911889:881040..881120TCONS_00056943-exon-scaffold_284-1491911889:881040..881120Clytia hemisphaericaexon
TCONS_00056943-exon-scaffold_284-1491911889:880659..880832TCONS_00056943-exon-scaffold_284-1491911889:880659..880832Clytia hemisphaericaexon
TCONS_00056943-exon-scaffold_284-1491911889:879845..880516TCONS_00056943-exon-scaffold_284-1491911889:879845..880516Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:879845..888711 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.1495	25.2436	11.6841	11.597	0.820929	0.00020915	3.23653	3.48999	85.5517	86.8686	41.5046	36.0036	29.7513	26.3531	57.947	62.8605	88.9957	91.8716	28.4506	33.1904	46.3648	36.386	61.8451	44.5757	0.535725	0.320783	36.4437	18.2265	41.8073	51.4624
Blast
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BLAST of TCONS_00056943 vs. Swiss-Prot (Human)
Match: MSI1H (RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.142e-32
Identity = 72/210 (34.29%), Postives = 106/210 (50.48%), Query Frame = 2 
Query:  242 KPYIRNPNEEH--CKIFVGGVGKLTNDESLRAYFGKFGEIADSVIMKDKHTNEPRGFAFVTFKTPEAVSAVIEQNNKGGHTLDGKMFIEVRKFQRKSEYDPDKXXXXXXXXXXXXXXXFQYKGPMKCSPEMKVFVGGIGIGTTEDDVKKYFEQFGKVLAVDMPVHHVYKCPKGFAFVGFETFDVVAAVTKDRYHQINGKTVEVKGSDEQQ 865
            +P + +P+  H  CK+F+GG+   T  E LR YFG+FGE+ + ++M+D  T   RGF FVTF     V  V+ Q+    H LD K       F R+++                         P   +   K+FVGG+ + TT +DVK+YFEQFGKV    +         +GF FV FE+ D+V  V +  +H+IN K VE K +  ++
Sbjct:    7 QPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR---HELDSKTIDPKVAFPRRAQ-------------------------PKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKAQPKE 188
The following BLAST results are available for this feature:
BLAST of TCONS_00056943 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MSI1H6.142e-3234.29RNA-binding protein Musashi homolog 1 OS=Homo sapi... [more]
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