TCONS_00056940 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056940
Unique NameTCONS_00056940
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1954

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056940 ID=TCONS_00056940|Name=TCONS_00056940|organism=Clytia hemisphaerica|type=transcript|length=1954bp
GGAAAACAGAACCTTTATCCATGTCATCCAAATTAGTaatgtattatttt
ttttcttttaagtgtccaaaataataataaacacaaaatgGCTGGTTCAA
TCGACACTGATTGCATGACCTTAAACAGGTTCATTTTACAAGAACAGAGA
AAATCACCAAATGCTACTGGGGACTTGACTCATCTCCTTAACTCAATTTT
GACTGCTGTTAAAGCTATATCAACTGCTGTCAGAAGAGCTGGGATGACTA
AAATGTTTGGAGTTGCTGGGCATGACAATGCGACTGGGGACAAGGTGCAG
AAATTGGACGTATTATCAAACGAACTGTTTATCAATATGTTGCAATCATC
TTATACTGTCTGTGGCATGGTTtcagaagaaaatgaaaacatgatTGAAG
TAGAAACAGAACGTCAAGGAAAATACATTGTTTATTTTGATCCATTGGAC
GGATCTTCAAATATTGACTGTCTTGTTTCTATTGGTTCAATTTTTGGTAT
CGCCAAAAAGGACGATGATGGACCATTAACTAAAGAATCTTGTCTTGTAC
CAGGAAGTCAATTCGTAGCATCTGGGTATGCTTTGTATGGTAGTGCAACC
ATGGTCGTGTTGACTACTGGAAATGGTGTTAACGGCTTCACTCTCGATCC
TGCTATTGGTGAATTTTTGCTAACAGACCCTGACATGAAGATTAAGCCAC
GTGGAAAAATTTACAGTTTGAACGAAGGTTATGCAGCACAATTTGATGAG
CCGCTCAAGAAATACctggaatctttaaaaaacccATCTGGTGACAAGAA
AGCATATGGAGCACGTTACATTGGATCTATGGTGGCTGATATGCATCGTA
CCATCAAGTATGGTGGCATCTTTATGTACCCTGCAAATAAGTCTGCACCT
AAAGGAAAAttaCGTTTATTATACGAATGCAACCCAATGGCGCACATTGT
TGAACAAGCAGGTGGCATGGCAACCGATGGTAAACAAAGAATTTTGGATC
TCAAACCGTCTGCTCTTCACGAGCGATCTCCTATCTTTATTGGATCGAAA
GAAGATGTCGAAGATTTCTTGAAATTCCAAAGCTAAGTTGTCGTGTTTAA
CTCTTATAGTTAAAAACTTGAATTTTAATACCACGTTTGCTCGCACTTTC
TTGAAagaattctggataaattatggatcatagtttttgaatcttttttg
aaTATGCACCAAATAACAAAACCTAGAACTGTTTGCCTCTCATTACTTTA
GGATAGTTTCCACTGAATATATTTTGGATTAGAAAAGATAACTTTGTGGA
CAAAATGCTCCTATTTATACTATTTGCACATACatatgttattttttcat
gttagcaaatcagtttttttaaggtagtgaaaatttaaattaaaaaaagc
ccTTTGCACTTTTCCTAAGATAGATCAATAGCCATGCAGGCTTTTTTTAC
GACGAAGATAATTTTTTGCCGATGCCGTAGAATTTCtttccataattttt
ttacccaatatttcaatttcttttagatattttcttttctgtttagataa
tactttattttttattgttttttaaaactatttttttggaCTGTGTTTAG
GACTTTGTTAACGATATAATACTAATTTTTGGTATGGaatctttaaagat
ttttaaaggtaaatgtgaaaatattaaagataAAGTTGAACAGCATCGCA
TCGTCCCGGCAGAGAAGTCTTTCGGTATTACAATATCGTCAATATTTTTT
AGCATTTAGAATTTTTGTGTTAGATTGCTTTTGtctatttatttcttatt
tctaGTTTCTTTGAATACTAAAGATATAGATGCTATATAAACGAGAATAT
AGATCATTCTCGCCTTTCTAATTCGTATCGTTTTGGATTCACTCGAAACA
TACAAATAAACATTTCCAAATAAGTCATTGTAACGCCGCTGAAAAATTCT
ATTA
Run BLAST on NCBI

protein sequence of TCONS_00056940-protein

>TCONS_00056940-protein ID=TCONS_00056940-protein|Name=TCONS_00056940-protein|organism=Clytia hemisphaerica|type=polypeptide|length=332bp
MAGSIDTDCMTLNRFILQEQRKSPNATGDLTHLLNSILTAVKAISTAVRR
AGMTKMFGVAGHDNATGDKVQKLDVLSNELFINMLQSSYTVCGMVSEENE
NMIEVETERQGKYIVYFDPLDGSSNIDCLVSIGSIFGIAKKDDDGPLTKE
SCLVPGSQFVASGYALYGSATMVVLTTGNGVNGFTLDPAIGEFLLTDPDM
KIKPRGKIYSLNEGYAAQFDEPLKKYLESLKNPSGDKKAYGARYIGSMVA
DMHRTIKYGGIFMYPANKSAPKGKLRLLYECNPMAHIVEQAGGMATDGKQ
RILDLKPSALHERSPIFIGSKEDVEDFLKFQS
Run BLAST on NCBI

transcript from alignment at scaffold_284:794398..799736-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056940 ID=TCONS_00056940|Name=TCONS_00056940|organism=Clytia hemisphaerica|type=transcript|length=5339bp|location=Sequence derived from alignment at scaffold_284:794398..799736- (Clytia hemisphaerica)
GGAAAACAGAACCTTTATCCATGTCATCCAAATTAGTAATGTATTATTTT
TTTTCTTTTAAGTGTCCAAAATAATAATAAACACAAAATGGCTGGTTCAA
TCGACACTGATTGCATGACCTTAAACAGGTTCATTTTACAAGAACAGAGA
AAATCACCAAATGCTACTGGGGACTTGACTCATCTCCTTAACTCAATTTT
GACTGCTGTTAAAGCTATATCAACTGCTGTCAGAAGAGCTGGGATGACTA
AAATGTAAGTCCTTCATTTCAAAGCATAAAATACTAAGATTTTATACTTA
CCGAGAATTACCCATTATAAATTCTGATAAATTATTCATTGCATTTTCTA
CATTGTATATCATTGTTTGTTTCTCACAAGTCAATACTTTTAACACTGTT
TTACTCTTATCAGTATGTTGTTTGGTGTTATTAAGGGAGGAGGGTAGAGA
GTTAGCTTAAAAGGGAAGAAATTTTCACGGAAAGAAATTTTCGCAGAATT
TAATTTCGCGGTTCACAGCTCAAAATTCGGAAGTTTCAAGGAATTTAATT
TCGCCGCTGAGAGGATTTCTTGTTTAAAATATGGCCTATTTCGCCCTAAA
AGGACCAATTTTATATGTGATTTTTTAAATCATGAGAATATTCGTTTTTC
TCGGAATTTAATTTTACAGGTTTGTCCAAAAATTGCGAAATTAAATTCCG
CAAAAATTTGTTCTGTGAAAATTTTTTCCCGCAAAAATCTTTTCCCTTAA
GGTATTAAAAAACTTCCAAACTTTAACTATTTTTGAACTATTTAAACCTA
GAATTCTGTATCGTAAGGTTACCCTATTTTTGAAGGTTTGGAGTTGCTGG
GCATGACAATGCGACTGGGGACAAGGTGCAGAAATTGGACGTATTATCAA
ACGAACTGTTTATCAATATGTTGCAATCATCTTATACTGTCTGTGGCATG
GTTTCAGAAGAAAATGAAAACATGATTGAAGTAGAAACAGAACGTCAAGG
AAAATACATTGTTTATTTTGATCCATTGGACGGATCTTCAAATATTGACT
GTCTTGTTTCTATTGGTTCAATTTTTGGTATCGCCAAAAAGGTTTGTTAA
AATTCGAATATGTGTCTCATAGAAGGTTTCTGGCCCTGTAAAGTCAGTTT
TTCCCCAATGATTGTTTTAAATAGAGGTAATGATAATATTAAAGTTTTTA
CTGTGTTTTTTTTATCACTTTTCACAGGGGAAAAATCACAAAAAATACTC
TAAAATTAATCTAATTAAAGTAATCTAAATCTACTTTTCAATCCCATTTC
AGAGATGTATAGTTTTGAAAAGGTAATAAAAGTTACCATACATTATTAAG
TTTGCCATGCTTCAAATTGTCAATTTTATAATTATATTGATTTTTATTGT
TTTGTTATTCTTATTTCTTATTTATTTATAATTGTAGGACGATGATGGAC
CATTAACTAAAGAATCTTGTCTTGTACCAGGAAGTCAATTCGTAGCATCT
GGGTATGCTTTGTATGGTAGTGCAACCATGGTCGTGTTGACTACTGGAAA
TGGTGTTAACGGCTTCACTCTCGATCCTGTNTGCAACCATGGTCGTGCTG
ACTACTGGAAATGGTGTTAACGGCTTCACTCTCGATCCTGTAAGTTTCCA
CTTCATTTGTATGAGATTACATACTGCATTCCTTGAAAATATTCTTTGAA
AATCTTTGCACCGCAAAGGAGACAAAGATCAAGTCGATTGATTCTTAAGA
GTTTAAATAGCATTGATATGGGGCATTTGAATTGATCTTCATTTTTTGAT
TTGTTTGAAAAAAGTTATCAACCAGTACCGACCTGCCCTTACAGCAGTAC
GAAATTAGGCTTTAATTTATACCAGATTTCAATCTGTTGCAATGATCTTA
TTTCAATACAATGGCATTTAACCTAGTCATGTCATATAAGCTTCTTCATG
TTTGAATACACCTATCAATCTTAAAACCACAATGTAGAGATAAGATTCAA
ATAATCTTAAAAACGTTTCAACACGATACCCTATTAAGCTTCATGTCTGA
ATATGCATCTATCAACCTTAAAACCACAATGAGATGAGATTCGATTTTAC
CGCATCTATAATGACGTAAAATGCATGTATTTGTTAGCATGGTAATGAAA
TGACATCAAATGATTCTACTAAATATGCCAGGCTTAAAAAATCAGTGCTA
ACTACAGGCCCGCCGGAATAACCGTAAAAGTGTGGAGGCTGAAGGCTCAA
TATGAGATAAAATTCGCTAGGAATTTGAGAAAAAAACTTCGTTTACTTAA
AAGTGGGGAGGCTGGAGTCTCCCCAGTCTCCTCGCTTCCGCCAGGCTTGA
ACTATATTATACATTTGATTGGAAAACATTTTCCTACGGAGTTTGTTATT
AATTTCGTTATACCCAGGGGGGGGGTTCAAGCAGTTAATCCAAAACACTA
TGCCTGTTTTGACCGTGGTGGTCCATTTTCAAATTTTGAAAAATAGAGTT
AATCCAAGAGTGGATTAACTGCCAAAGGGGTGGTCTCTGAAAGAATTCTG
GGAAAAAAACGTGGACTAACTGCATTTTCTGTCATTCTGGAAAATTCATT
TATTCTGATTCATGCTCGTTTTTGCCTCTTCTTCTGTCTTTTAAAACGTC
AAATTGCATCAAAGTCTTGCTTTAACTTTCTTTAAAGTTAAAATTACTTA
GAAAGTCGACCAACATCAATTAAAATAACTTAATGCATGCCAAAATGCCG
CGGTGGACTGTTTTAGGGGGTGGTATACAAAGATTGTGACTGAAAAACAG
TAAATCCAGTGTGGATTAAGTGTCAGAATGGGTGGGTGGTCCTAAATATC
ATCCAAAATCAGTTACTACGGATGATGTTCTGGGTTAACTGCTTGACCCC
CCCTGTTATACCATGTGATCAATTTTCAATGTTCTCCTTTAAGGCTATTG
GTGAATTTTTGCTAACAGACCCTGACATGAAGATTAAGCCACGTGGAAAA
ATTTACAGTTTGAACGAAGGTTATGCAGCACAATTTGATGAGCCGCTCAA
GAAATACCTGGAATCTTTAAAAAACCCATCTGTAAGTTCTTTGATCGCTC
CCAAAAATTAATTTTGCAATTTCATAGTCTCCAGTAAAGGTTAATTGTTG
TTTTTCTGGATAAGCTAATAATTTCAGTATCCATGCTTGATTTGATTATA
CGAGCCACATTTCTAAAAGGAAGACTTCGATTATTTCATTGAGAAGTGAT
GATTTGCAATATCATCCGCAACCAAACTAGTATTCACCAGGGAGCCAAAG
TCATTAATTAAATGAAAATATTATATCCACATCTTAGGTTATTTCACAAG
CTTTTCCATTCTCTTTATTCTAAAAAGGGTGACAAGAAAGCATATGGAGC
ACGTTACATTGGATCTATGGTGGCTGATATGCATCGTACCATCAAGTATG
GTGGCATCTTTATGTACCCTGCAAATAAGTCTGCACCTAAAGGAAAAGTA
AGTAGACATTGTATGAATTTGTACAAATCCATCCTTATGGATTATAAGTC
ACATAACCCTCTCAGCGTTTGCTTAGATTTTGGGACAAATAGTTTTCAAT
ATTTTGTCAACACTTCAGATGTATACAATTTTCAACTGCATACAATTTTC
AACTGCGTTCATGCTTTTTTATTCCAAGATACCTCAGCTTCTAAAGTGTG
AACAACAGACCCGGGGGGAGGGGGGTTACTACCCTTGTCGATCGACGGGA
TGCTCCGCTGAGGTTCGAAAAATGGGCCCTACGTGAGACTCGTTTTTCAA
AAATTTTGCCGAAATTTGCGAAAAAAGTAACCCTGAATGGGACTGAAATT
CCAAAATTTTCTTCTACTTTTACCTTCGCCTTCCCCAAGACTCTCTACGA
AGGGTTACAAAAACAACGAAAAGTCGAAATAGTTTCTCTGAAGATCAGGA
TTTCTCCTTTTTATGGGTCTTAAAAAATGAAAATCCAAAACTACTGTATC
CCTCAAATGTTAGAGGATTTTTCGAAAATTTGCTTAACGGTCATTTTTTT
GGCTGCTTTTGTCTCTGTAAAGATGACGAATTTTTCGCAAAAATTTTGTG
TTTTTAAGGGTCGTTTTCAAAGGTCACATTCTCCAACTTCTCCAACCCTA
GACCACAAGTATGAGACTACAGTATGAGCTGGTTTGAGTAAGACTACACG
CATTATAACCATGAAATTTTGTTAATCGAAGTTCCTCCAGTCCTAACGAA
GCTTTCAGTATTAGCTTTAAGCTGGATGTGTTTTATTTTTTCAGTTACGT
TTATTATACGAATGCAACCCAATGGCGCACATTGTTGAACAAGCAGGTGG
CATGGCAACCGATGGTAAACAAAGAATTTTGGATCTCAAACCGTCTGCTC
TTCACGAGCGATCTCCTATCTTTATTGGATCGAAAGAAGATGTCGAAGAT
TTCTTGAAATTCCAAAGCTAAGTTGTCGTGTTTAACTCTTATAGTTAAAA
ACTTGAATTTTAATACCACGTTTGCTCGCACTTTCTTGAAAGAATTCTGG
ATAAATTATGGATCATAGTTTTTGAATCTTTTTTGAATATGCACCAAATA
ACAAAACCTAGAACTGTTTGCCTCTCATTACTTTAGGATAGTTTCCACTG
AATATATTTTGGATTAGAAAAGATAACTTTGTGGACAAAATGCTCCTATT
TATACTATTTGCACATACATATGTTATTTTTTCATGTTAGCAAATCAGTT
TTTTTAAGGTAGTGAAAATTTAAATTAAAAAAAGCCCTTTGCACTTTTCC
TAAGATAGATCAATAGCCATGCAGGCTTTTTTTACGACGAAGATAATTTT
TTGCCGATGCCGTAGAATTTCTTTCCATAATTTTTTTACCCAATATTTCA
ATTTCTTTTAGATATTTTCTTTTCTGTTTAGATAATACTTTATTTTTTAT
TGTTTTTTAAAACTATTTTTTTGGACTGTGTTTAGGACTTTGTTAACGAT
ATAATACTAATTTTTGGTATGGAATCTTTAAAGATTTTTAAAGGTAAATG
TGAAAATATTAAAGATAAAGTTGAACAGCATCGCATCGTCCCGGCAGAGA
AGTCTTTCGGTATTACAATATCGTCAATATTTTTTAGCATTTAGAATTTT
TGTGTTAGATTGCTTTTGTCTATTTATTTCTTATTTCTAGTTTCTTTGAA
TACTAAAGATATAGATGCTATATAAACGAGAATATAGATCATTCTCGCCT
TTCTAATTCGTATCGTTTTGGATTCACTCGAAACATACAAATAAACATTT
CCAAATAAGTCATTGTAACGCCGCTGAAAAATTCTATTA

Coding sequence (CDS) from alignment at scaffold_284:794398..799736-

>TCONS_00056940 ID=TCONS_00056940|Name=TCONS_00056940|organism=Clytia hemisphaerica|type=CDS|length=5994bp|location=Sequence derived from alignment at scaffold_284:794398..799736- (Clytia hemisphaerica)
TTACGTTTATTATACGAATGCAACCCAATGGCGCACATTGTTGAACAAGC
AGGTGGCATGGCAACCGATGGTAAACAAAGAATTTTGGATCTCAAACCGT
CTGCTCTTCACGAGCGATCTCCTATCTTTATTGGATCGAAAGAAGATGTC
GAAGATTTCTTGAAATTCCAAAGCTAAGGTGACAAGAAAGCATATGGAGC
ACGTTACATTGGATCTATGGTGGCTGATATGCATCGTACCATCAAGTATG
GTGGCATCTTTATGTACCCTGCAAATAAGTCTGCACCTAAAGGAAAAGCT
ATTGGTGAATTTTTGCTAACAGACCCTGACATGAAGATTAAGCCACGTGG
AAAAATTTACAGTTTGAACGAAGGTTATGCAGCACAATTTGATGAGCCGC
TCAAGAAATACCTGGAATCTTTAAAAAACCCATCTGACGATGATGGACCA
TTAACTAAAGAATCTTGTCTTGTACCAGGAAGTCAATTCGTAGCATCTGG
GTATGCTTTGTATGGTAGTGCAACCATGGTCGTGTTGACTACTGGAAATG
GTGTTAACGGCTTCACTCTCGATCCTGTTTGGAGTTGCTGGGCATGACAA
TGCGACTGGGGACAAGGTGCAGAAATTGGACGTATTATCAAACGAACTGT
TTATCAATATGTTGCAATCATCTTATACTGTCTGTGGCATGGTTTCAGAA
GAAAATGAAAACATGATTGAAGTAGAAACAGAACGTCAAGGAAAATACAT
TGTTTATTTTGATCCATTGGACGGATCTTCAAATATTGACTGTCTTGTTT
CTATTGGTTCAATTTTTGGTATCGCCAAAAAGATGGCTGGTTCAATCGAC
ACTGATTGCATGACCTTAAACAGGTTCATTTTACAAGAACAGAGAAAATC
ACCAAATGCTACTGGGGACTTGACTCATCTCCTTAACTCAATTTTGACTG
CTGTTAAAGCTATATCAACTGCTGTCAGAAGAGCTGGGATGACTAAAATT
TACGTTTATTATACGAATGCAACCCAATGGCGCACATTGTTGAACAAGCA
GGTGGCATGGCAACCGATGGTAAACAAAGAATTTTGGATCTCAAACCGTC
TGCTCTTCACGAGCGATCTCCTATCTTTATTGGATCGAAAGAAGATGTCG
AAGATTTCTTGAAATTCCAAAGCTAAGGTGACAAGAAAGCATATGGAGCA
CGTTACATTGGATCTATGGTGGCTGATATGCATCGTACCATCAAGTATGG
TGGCATCTTTATGTACCCTGCAAATAAGTCTGCACCTAAAGGAAAAGCTA
TTGGTGAATTTTTGCTAACAGACCCTGACATGAAGATTAAGCCACGTGGA
AAAATTTACAGTTTGAACGAAGGTTATGCAGCACAATTTGATGAGCCGCT
CAAGAAATACCTGGAATCTTTAAAAAACCCATCTGACGATGATGGACCAT
TAACTAAAGAATCTTGTCTTGTACCAGGAAGTCAATTCGTAGCATCTGGG
TATGCTTTGTATGGTAGTGCAACCATGGTCGTGTTGACTACTGGAAATGG
TGTTAACGGCTTCACTCTCGATCCTGTTTGGAGTTGCTGGGCATGACAAT
GCGACTGGGGACAAGGTGCAGAAATTGGACGTATTATCAAACGAACTGTT
TATCAATATGTTGCAATCATCTTATACTGTCTGTGGCATGGTTTCAGAAG
AAAATGAAAACATGATTGAAGTAGAAACAGAACGTCAAGGAAAATACATT
GTTTATTTTGATCCATTGGACGGATCTTCAAATATTGACTGTCTTGTTTC
TATTGGTTCAATTTTTGGTATCGCCAAAAAGATGGCTGGTTCAATCGACA
CTGATTGCATGACCTTAAACAGGTTCATTTTACAAGAACAGAGAAAATCA
CCAAATGCTACTGGGGACTTGACTCATCTCCTTAACTCAATTTTGACTGC
TGTTAAAGCTATATCAACTGCTGTCAGAAGAGCTGGGATGACTAAAATTT
ACGTTTATTATACGAATGCAACCCAATGGCGCACATTGTTGAACAAGCAG
GTGGCATGGCAACCGATGGTAAACAAAGAATTTTGGATCTCAAACCGTCT
GCTCTTCACGAGCGATCTCCTATCTTTATTGGATCGAAAGAAGATGTCGA
AGATTTCTTGAAATTCCAAAGCTAAGGTGACAAGAAAGCATATGGAGCAC
GTTACATTGGATCTATGGTGGCTGATATGCATCGTACCATCAAGTATGGT
GGCATCTTTATGTACCCTGCAAATAAGTCTGCACCTAAAGGAAAAGCTAT
TGGTGAATTTTTGCTAACAGACCCTGACATGAAGATTAAGCCACGTGGAA
AAATTTACAGTTTGAACGAAGGTTATGCAGCACAATTTGATGAGCCGCTC
AAGAAATACCTGGAATCTTTAAAAAACCCATCTGACGATGATGGACCATT
AACTAAAGAATCTTGTCTTGTACCAGGAAGTCAATTCGTAGCATCTGGGT
ATGCTTTGTATGGTAGTGCAACCATGGTCGTGTTGACTACTGGAAATGGT
GTTAACGGCTTCACTCTCGATCCTGTTTGGAGTTGCTGGGCATGACAATG
CGACTGGGGACAAGGTGCAGAAATTGGACGTATTATCAAACGAACTGTTT
ATCAATATGTTGCAATCATCTTATACTGTCTGTGGCATGGTTTCAGAAGA
AAATGAAAACATGATTGAAGTAGAAACAGAACGTCAAGGAAAATACATTG
TTTATTTTGATCCATTGGACGGATCTTCAAATATTGACTGTCTTGTTTCT
ATTGGTTCAATTTTTGGTATCGCCAAAAAGATGGCTGGTTCAATCGACAC
TGATTGCATGACCTTAAACAGGTTCATTTTACAAGAACAGAGAAAATCAC
CAAATGCTACTGGGGACTTGACTCATCTCCTTAACTCAATTTTGACTGCT
GTTAAAGCTATATCAACTGCTGTCAGAAGAGCTGGGATGACTAAAATTTA
CGTTTATTATACGAATGCAACCCAATGGCGCACATTGTTGAACAAGCAGG
TGGCATGGCAACCGATGGTAAACAAAGAATTTTGGATCTCAAACCGTCTG
CTCTTCACGAGCGATCTCCTATCTTTATTGGATCGAAAGAAGATGTCGAA
GATTTCTTGAAATTCCAAAGCTAAGGTGACAAGAAAGCATATGGAGCACG
TTACATTGGATCTATGGTGGCTGATATGCATCGTACCATCAAGTATGGTG
GCATCTTTATGTACCCTGCAAATAAGTCTGCACCTAAAGGAAAAGCTATT
GGTGAATTTTTGCTAACAGACCCTGACATGAAGATTAAGCCACGTGGAAA
AATTTACAGTTTGAACGAAGGTTATGCAGCACAATTTGATGAGCCGCTCA
AGAAATACCTGGAATCTTTAAAAAACCCATCTGACGATGATGGACCATTA
ACTAAAGAATCTTGTCTTGTACCAGGAAGTCAATTCGTAGCATCTGGGTA
TGCTTTGTATGGTAGTGCAACCATGGTCGTGTTGACTACTGGAAATGGTG
TTAACGGCTTCACTCTCGATCCTGTTTGGAGTTGCTGGGCATGACAATGC
GACTGGGGACAAGGTGCAGAAATTGGACGTATTATCAAACGAACTGTTTA
TCAATATGTTGCAATCATCTTATACTGTCTGTGGCATGGTTTCAGAAGAA
AATGAAAACATGATTGAAGTAGAAACAGAACGTCAAGGAAAATACATTGT
TTATTTTGATCCATTGGACGGATCTTCAAATATTGACTGTCTTGTTTCTA
TTGGTTCAATTTTTGGTATCGCCAAAAAGATGGCTGGTTCAATCGACACT
GATTGCATGACCTTAAACAGGTTCATTTTACAAGAACAGAGAAAATCACC
AAATGCTACTGGGGACTTGACTCATCTCCTTAACTCAATTTTGACTGCTG
TTAAAGCTATATCAACTGCTGTCAGAAGAGCTGGGATGACTAAAATTTAC
GTTTATTATACGAATGCAACCCAATGGCGCACATTGTTGAACAAGCAGGT
GGCATGGCAACCGATGGTAAACAAAGAATTTTGGATCTCAAACCGTCTGC
TCTTCACGAGCGATCTCCTATCTTTATTGGATCGAAAGAAGATGTCGAAG
ATTTCTTGAAATTCCAAAGCTAAGGTGACAAGAAAGCATATGGAGCACGT
TACATTGGATCTATGGTGGCTGATATGCATCGTACCATCAAGTATGGTGG
CATCTTTATGTACCCTGCAAATAAGTCTGCACCTAAAGGAAAAGCTATTG
GTGAATTTTTGCTAACAGACCCTGACATGAAGATTAAGCCACGTGGAAAA
ATTTACAGTTTGAACGAAGGTTATGCAGCACAATTTGATGAGCCGCTCAA
GAAATACCTGGAATCTTTAAAAAACCCATCTGACGATGATGGACCATTAA
CTAAAGAATCTTGTCTTGTACCAGGAAGTCAATTCGTAGCATCTGGGTAT
GCTTTGTATGGTAGTGCAACCATGGTCGTGTTGACTACTGGAAATGGTGT
TAACGGCTTCACTCTCGATCCTGTTTGGAGTTGCTGGGCATGACAATGCG
ACTGGGGACAAGGTGCAGAAATTGGACGTATTATCAAACGAACTGTTTAT
CAATATGTTGCAATCATCTTATACTGTCTGTGGCATGGTTTCAGAAGAAA
ATGAAAACATGATTGAAGTAGAAACAGAACGTCAAGGAAAATACATTGTT
TATTTTGATCCATTGGACGGATCTTCAAATATTGACTGTCTTGTTTCTAT
TGGTTCAATTTTTGGTATCGCCAAAAAGATGGCTGGTTCAATCGACACTG
ATTGCATGACCTTAAACAGGTTCATTTTACAAGAACAGAGAAAATCACCA
AATGCTACTGGGGACTTGACTCATCTCCTTAACTCAATTTTGACTGCTGT
TAAAGCTATATCAACTGCTGTCAGAAGAGCTGGGATGACTAAAATTTACG
TTTATTATACGAATGCAACCCAATGGCGCACATTGTTGAACAAGCAGGTG
GCATGGCAACCGATGGTAAACAAAGAATTTTGGATCTCAAACCGTCTGCT
CTTCACGAGCGATCTCCTATCTTTATTGGATCGAAAGAAGATGTCGAAGA
TTTCTTGAAATTCCAAAGCTAAGGTGACAAGAAAGCATATGGAGCACGTT
ACATTGGATCTATGGTGGCTGATATGCATCGTACCATCAAGTATGGTGGC
ATCTTTATGTACCCTGCAAATAAGTCTGCACCTAAAGGAAAAGCTATTGG
TGAATTTTTGCTAACAGACCCTGACATGAAGATTAAGCCACGTGGAAAAA
TTTACAGTTTGAACGAAGGTTATGCAGCACAATTTGATGAGCCGCTCAAG
AAATACCTGGAATCTTTAAAAAACCCATCTGACGATGATGGACCATTAAC
TAAAGAATCTTGTCTTGTACCAGGAAGTCAATTCGTAGCATCTGGGTATG
CTTTGTATGGTAGTGCAACCATGGTCGTGTTGACTACTGGAAATGGTGTT
AACGGCTTCACTCTCGATCCTGTTTGGAGTTGCTGGGCATGACAATGCGA
CTGGGGACAAGGTGCAGAAATTGGACGTATTATCAAACGAACTGTTTATC
AATATGTTGCAATCATCTTATACTGTCTGTGGCATGGTTTCAGAAGAAAA
TGAAAACATGATTGAAGTAGAAACAGAACGTCAAGGAAAATACATTGTTT
ATTTTGATCCATTGGACGGATCTTCAAATATTGACTGTCTTGTTTCTATT
GGTTCAATTTTTGGTATCGCCAAAAAGATGGCTGGTTCAATCGACACTGA
TTGCATGACCTTAAACAGGTTCATTTTACAAGAACAGAGAAAATCACCAA
ATGCTACTGGGGACTTGACTCATCTCCTTAACTCAATTTTGACTGCTGTT
AAAGCTATATCAACTGCTGTCAGAAGAGCTGGGATGACTAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035867XLOC_035867Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056940-proteinTCONS_00056940-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056940-exon-scaffold_284-1575043694:799483..799736TCONS_00056940-exon-scaffold_284-1575043694:799483..799736Clytia hemisphaericaexon
TCONS_00056940-exon-scaffold_284-1575043694:798646..798901TCONS_00056940-exon-scaffold_284-1575043694:798646..798901Clytia hemisphaericaexon
TCONS_00056940-exon-scaffold_284-1575043694:798159..798299TCONS_00056940-exon-scaffold_284-1575043694:798159..798299Clytia hemisphaericaexon
TCONS_00056940-exon-scaffold_284-1575043694:796656..796793TCONS_00056940-exon-scaffold_284-1575043694:796656..796793Clytia hemisphaericaexon
TCONS_00056940-exon-scaffold_284-1575043694:796240..796359TCONS_00056940-exon-scaffold_284-1575043694:796240..796359Clytia hemisphaericaexon
TCONS_00056940-exon-scaffold_284-1575043694:794398..795442TCONS_00056940-exon-scaffold_284-1575043694:794398..795442Clytia hemisphaericaexon
TCONS_00056940-exon-scaffold_284-1510915933:799483..799736TCONS_00056940-exon-scaffold_284-1510915933:799483..799736Clytia hemisphaericaexon
TCONS_00056940-exon-scaffold_284-1510915933:798646..798901TCONS_00056940-exon-scaffold_284-1510915933:798646..798901Clytia hemisphaericaexon
TCONS_00056940-exon-scaffold_284-1510915933:798159..798299TCONS_00056940-exon-scaffold_284-1510915933:798159..798299Clytia hemisphaericaexon
TCONS_00056940-exon-scaffold_284-1510915933:796656..796793TCONS_00056940-exon-scaffold_284-1510915933:796656..796793Clytia hemisphaericaexon
TCONS_00056940-exon-scaffold_284-1510915933:796240..796359TCONS_00056940-exon-scaffold_284-1510915933:796240..796359Clytia hemisphaericaexon
TCONS_00056940-exon-scaffold_284-1510915933:794398..795442TCONS_00056940-exon-scaffold_284-1510915933:794398..795442Clytia hemisphaericaexon
TCONS_00056940-exon-scaffold_284-1491911889:799483..799736TCONS_00056940-exon-scaffold_284-1491911889:799483..799736Clytia hemisphaericaexon
TCONS_00056940-exon-scaffold_284-1491911889:798646..798901TCONS_00056940-exon-scaffold_284-1491911889:798646..798901Clytia hemisphaericaexon
TCONS_00056940-exon-scaffold_284-1491911889:798159..798299TCONS_00056940-exon-scaffold_284-1491911889:798159..798299Clytia hemisphaericaexon
TCONS_00056940-exon-scaffold_284-1491911889:796656..796793TCONS_00056940-exon-scaffold_284-1491911889:796656..796793Clytia hemisphaericaexon
TCONS_00056940-exon-scaffold_284-1491911889:796240..796359TCONS_00056940-exon-scaffold_284-1491911889:796240..796359Clytia hemisphaericaexon
TCONS_00056940-exon-scaffold_284-1491911889:794398..795442TCONS_00056940-exon-scaffold_284-1491911889:794398..795442Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:794398..799736 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
55.0362	56.286	37.7066	35.7414	65.5281	49.3546	101.602	117.509	142.218	163.851	138.522	115.757	51.0033	53.6836	87.1968	75.413	102.457	87.3379	19.8834	45.8875	64.3185	63.224	67.7424	74.0281	50.0748	54.7235	111.763	92.8563	50.7056	39.8206
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR028343FBPtase
IPR033391FBPase_N
IPR000146FBPase_class-1
IPR020548Fructose_bisphosphatase_AS
Vocabulary: Molecular Function
TermDefinition
GO:0042132fructose 1,6-bisphosphate 1-phosphatase activity
GO:0016791phosphatase activity
GO:0042578phosphoric ester hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
molecular_function GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity
molecular_function GO:0016791 phosphatase activity
molecular_function GO:0042578 phosphoric ester hydrolase activity
Blast
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BLAST of TCONS_00056940 vs. Swiss-Prot (Human)
Match: F16P2 (Fructose-1,6-bisphosphatase isozyme 2 OS=Homo sapiens GN=FBP2 PE=1 SV=2)

HSP 1 Score: 374.785 bits (961), Expect = 6.494e-124
Identity = 190/323 (58.82%), Postives = 255/323 (78.95%), Query Frame = 1 
Query:  103 DTDCMTLNRFILQEQRKSPNATGDLTHLLNSILTAVKAISTAVRRAGMTKMFGVAGHDNATGDKVQKLDVLSNELFINMLQSSYTVCGXXXXXXXXXXXXXXXRQGKYIVYFDPLDGSSNIDCLVSIGSIFGIAKKDDDGPLTKESCLVPGSQFVASGYALYGSATMVVLTTGNGVNGFTLDPAIGEFLLTDPDMKIKPRGKIYSLNEGYAAQFDEPLKKYLESLKNPSGDKKAYGARYIGSMVADMHRTIKYGGIFMYPANKSAPKGKLRLLYECNPMAHIVEQAGGMATDGKQRILDLKPSALHERSPIFIGSKEDVEDFL 1071
            +TD +TL R+++++ R++   TG+LT LLNS+LTA+KAIS+AVR+AG+  ++G+AG  N TGD+V+KLDVLSN L INM+QSSY+ C +VSEEN++ I    E++GKY+V FDPLDGSSNIDCL SIG+IF I +K  +   +++  L  G   VA+GYALYGSAT+V L+TG GV+ F LDPA+GEF+L + D+KIK +GKIYSLNEGYA  FD    +Y++  K P      YGARY+GSMVAD+HRT+ YGGIF+YPAN+ +PKGKLRLLYECNP+A+I+EQAGG+AT G Q +LD+KP A+H+R P+ +GS EDV+++L
Sbjct:    8 ETDMLTLTRYVMEKGRQA-KGTGELTQLLNSMLTAIKAISSAVRKAGLAHLYGIAGSVNVTGDEVKKLDVLSNSLVINMVQSSYSTCVLVSEENKDAIITAKEKRGKYVVCFDPLDGSSNIDCLASIGTIFAIYRKTSEDEPSEKDALQCGRNIVAAGYALYGSATLVALSTGQGVDLFMLDPALGEFVLVEKDVKIKKKGKIYSLNEGYAKYFDAATTEYVQKKKFPEDGSAPYGARYVGSMVADVHRTLVYGGIFLYPANQKSPKGKLRLLYECNPVAYIIEQAGGLATTGTQPVLDVKPEAIHQRVPLILGSPEDVQEYL 329
The following BLAST results are available for this feature:
BLAST of TCONS_00056940 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
F16P26.494e-12458.82Fructose-1,6-bisphosphatase isozyme 2 OS=Homo sapi... [more]
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