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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056930 ID=TCONS_00056930|Name=TCONS_00056930|organism=Clytia hemisphaerica|type=transcript|length=1957bp
ACTAAACAGAAAGATAAAATCAAGATCTCAATTGTGGTGCAATCAGATGA
TTTATCAATACGAACAAATCTATTGGAAAGCACATTTACCAGTTTAACAA
AATTCACACTGACTGCACCAAATATCACATTATACAAATCGCAAATTGAT
AAAACACAAGATGGGGTCAATCTAGATTTGGTTTCAACAGGAACGTTAAG
AATATCATCACACCCATTGGCCGTCAGAAATGTTTCATTGACTGTGTTAC
CACtttctgaagaagaaaaagaATCAACTTCAACTTGTTCCAATGACATT
TTCATCGACGCTGGTGCTTTAGTGAAATGCATTTTCATTGAAACCAACAT
CTTCAACACTGCTGGTCATGTCTTTATCAATGGCACCTTAACAGCTGGTT
ACTTTGGCGAAGATTTGAacgtcaaaatcaaatcaagtgATCTTCACATT
GGCATCGATGCAATTGTTGGTCACAACTCAGTTGAAAATCAATCTAAAAG
ATCAATCAATGACCATAAACATTGgttaaaaacaaaagttttaaatcTTC
ATATTCATGATGGTGGCTTAACAAATTTCGGATCACTAATAGCTACAGAT
TGTATCAAATTAAATGCAAATGGATTGTCGCTTTGCTCAGACTCTAAACG
TGATACTGCACATCGCGGATTAGATGGTTTTATTGGTATCAAGAAAGATC
AAGGGTTCATTGATAATGCGATTAAGCCGAAGAAAAAGAGAACCTCGTCG
TTCAATGATGATCGAATGATTCAAGCTGTTCATAACTCTAATTGCCAGAA
TTTTCTTTCCATTGTCAAAGAAGGTGTAGATCCTAACATCTTGGTCGACG
GGAGACGAGTGTCTGACGAGGTTGAAATTCAACGAAAAAATGTTGGATTA
TCAGATcaagaaaatttggaaatcATACGTACTGGACTACATTTAAATGA
TTGGAAACATGGTATGATCAAAGCACCAATTATCGAATGCACAGTTACTG
GTGATATTGAGGACTGTTCACAGATCCAAGGTAGTGATATACGTTTCAAT
GTTGGTGGTTGTGTCATCATTACTATACCTTGGACATGGATTTCCAAAGA
TATCAGTGGACAAATCAGgggaaatttaattttcaatgataatgCTATTA
TTGGTTGTTTCAAAGACCTTCAGGTTCTTGGTAATGTTGTGATCTCCAAC
ACATCCACTTTGTACATCCAAAGAGGGGGCCGTTTATACTGCGCAAAAGC
ATTAGTGAACAGCAATGAAATCATATGCGAAGGAGATCTTCAATTAGATG
TTGCTCACATAAAGCAAACCGATGAAGGATTGATTATCAACAAAGGTGAT
TTGCTGGTAAATGTACATGATGTACGTGAACAACAAGAGCAAACCGATGA
AGGATTGATTATCAACAAAGGTGATTTGCTGAAAGGTGATTGGTTCGGCA
ATATCCTGGTACACAATCATTTTTTCCTCCAACTTCAGAAGAAAGTTGTT
ATTGATGCTCACGTTATATGCAAAGAATGTACTGTTCAATTCTTTGGGCC
AGAATCTCAGTTGGAGATCAACGGAACATGGATTGTAGACGTTGGTGTTT
TGAATCTTGAAGCCGATGAACATGCTAGTGATGGTGAAATTCCAAATCTA
GTTCTGGTTGGTCAGCTCTTTGCCAAGGGTATTGAAGGAATGACAGCTTC
CATTGAAACAGAACCTGGTGCACTTTGCCTTCTGACAGAAAGTATAGATC
CAGCTGTCAATGGAATCAATCTCGATGTCAAATGGATGAAGATAAAATCT
GATTCTGTGATAAGCTGTACTGGAGCTCCAGAGAATTCCAAGATGTCAAA
CACTGTGAATGTCAATTGCCAAGAGGAGTTGACCATCTTTGGTGAACTTC
GAATCGCTGGTATAAATCACTCAAACATTCATACACAATCATTGAAGAAC
TCTGGCC Run BLAST on NCBI transcript from alignment at scaffold_284:464139..469458- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056930 ID=TCONS_00056930|Name=TCONS_00056930|organism=Clytia hemisphaerica|type=transcript|length=5320bp|location=Sequence derived from alignment at scaffold_284:464139..469458- (Clytia hemisphaerica)
ACTAAACAGGTACTTAAAGGTTTTATTTTACATAAGTGTTCCCGTTTTAT
ATCAGACACATATTTCATATCAGGACAGTGTCTTTCTATTGTTATATTAT
GCTGATATAATCAAAAATTCATATTTACTTAACTTGGAAAATACTAAACA
GGTACACGTTTTTTTATAAGAACAAACTATATAAGAACATAAGGCTTCGG
TGACTGAAATGTTAAGAACAAGTTGAGAACATTTTAAGACTTTGCCGACT
CTAACAACAGCCAGTTTCTTAGAAAATGGGTAAAAATGCTCTAAAATAGT
GAAAATAAGAATATGTTAAGAACATTTTCAGGCTTCTAACTCAAAAAGTT
AAGAACATCCTAAGGCTTCAAAAATTTTGGATGCTCTTATAAAAAAAGAA
AGTGTACTGTAGGTCACACTGTAGAGTTTATGGTCAAAAATTAAAAATAT
GTCATTTTCTCTTTACTATCCTAATTTCGAAATCCTAATTGGTTTGTTCG
GTGTGTGTTGATTACTATTTCTATGAATTAGACCTTAATTAGTGTTAATT
ACGAAAAAAGCTGTTAATAGTAACTGTTAATAGCTATGAAACTAGGGGTA
CTAGGGTTACAAGTTGGCGGGGGGAGTTACCGCCCGACTTTCGATCCGCG
GATCCTTACCGGGCCTAAACAGGAGAAAACAAAGGAAAATTTTGTTGATT
TTACGACCTTTATTGGGACAAATTTGACCAATTTTTTATCTTTCCGGGGA
TAAAAAGTTAAAATTTTCCTATTTCTCCGACCCTTAGTGGGACTGCAACT
TGATTTTCTGATTTTTCCGACCCTTAGCGAGACTTTGGAAATCCAAAAAA
GCTACCCTTTAGGGCGGCACATACCATACCCTCCATTTGCCTAAGTACCC
CCCCCCTTGGATTGAAGCAAGGGCAAACATTGGAAGCTGATAAAATTATG
ACTTGTACCGGGTGTCCTAGAAAAAAATCCCCTCTTTCTCTTTTCTCCAG
TTCTGCCTCTTAAAGAATCAGTATTTTTTGCATTGGCAAGAGGAAGGATA
AACTTAAACTTTGAAGGGTCATTTGTTAAATTTGGTCAACTAGATCAAAA
GTTATGGCCTAGATGCTAAAACTTTACTTTTCAAAAAAGTTTAAAAAAGG
CGAAAAACGAGGGTATTGAATTTATTGTATGACAAAGACATCAATGTTTT
TTTATTCGGGGGCTATGCCAGTACACCTTAGTTTACAAACTCACTCACCC
AAGGATCTCTCTTTTATAGAAAGATAAAATCAAGATCTCAATTGTGGTGC
AATCAGATGATTTATCAATACGAACAAATCTATTGGAAAGCACATTTACC
AGTTTAACAAAATTCACACTGACTGCACCAAATATCACATTATACAAATC
GCAAATTGATAAAACACAAGATGGGGTCAATCTAGATTTGGTTTCAACAG
GAACGTTAAGAATATCATCACACCCATTGGCCGTCAGAAATGTTTCATTG
ACTGTGTTACCACTTTCTGAAGAAGAAAAAGGTGAATAGATTTTTAATGC
ACCCCTCCCCATAGCTGTCAACTTCGCCTCGCAAAAATGCGGTCGGAAAA
ATTCTCCCCGGTAATCCAATTTTTCCCAATGGAAAGATCAGGAAATCGAG
GGAATTTCTCTGCGAAGTCCGATTTTATCGGAATTTTTTTTCGAGAAATC
AGGGAAATCGGGGAATTTTTCGTCCCATTTCCAAATTCAGGAAATTTTGC
CATGTCGCTTTTACCATGAACATATAAACGACTGGACACCTATCTTTTAT
TGTCTCTTTGAAGCGAGCTTCGTTGCCGCCTGTTTTTCAAAATTGGTATA
AAAAATCCGACAATATTCCGTCATAATTTTATTTCTTTGAATTATTTAGG
TAAAAAGATTGATAGAGCTTGAATATTACCCCTAATGAACAAAAAAATTA
TTTTCGAATTTTTTTGCAAGTTTGTAATTTATTTTATCAACTTTTTCAAC
TCTGAAATGCAGAATTTCAACTGCGTGTATACTTTTGAATCCCTTTTGTC
ACTCCATTAATTTTTTTTATGACTTGAAAAAAATAGCTTGCCAAAGTTGA
GAACCTGTGTAATAAGAATATCGAAATTAGAATGTGACACTCTCTAAAAT
TATTAGACACTTTTAAGTCAAAATTTTGAAATATAAGTCGGAGTTTTGAC
AAGCTGACGATGATTTTGCCTCTGTTATCTTTGTTATGATATAGATAAAA
GACTTGAGAGGAGTAGAACAACAGAGAGACTTTAGACGAAGTTTTGATGT
TGTTAACAAGGTATTCCCAAGTGGTATATATCATCAAAATCTATTGTTTC
ATTTTATGCTTTTAACGAGGCGGCAACGAAGCTAGCCGTGTTATCTTAAA
AAAGACAAAGGAAATGGATGTCCAGTCGTTTATCTGTTCATGCTTTTACA
AAATCTGAAATTTTTTTCAGGAGATCGGAAAATTTTTGGAAATATGCGGG
AGATGCGGGAGAAAACGTTGGCATGCGGAAGTCTCCTGCCCAATGCAGGA
GAGTTGACAGCTATGCCTTCCCTGTGTCACAGATCCACTGGGACCCCAGC
CCCACTGGAAAATCTGGCAAAAATTTCGTCCACGGTAGTAAATACCCTGG
AATTTTAGCCCCACTGGGAAATTGACTTATATTTCATCCCCATTCGAAAT
TGAATGTTTAAAAATTGCGCTCCAAAACCATCCCCACTGGATTTTTTAGC
CTTTGAAGAATAGAATTTCTCTCCCCATTGGGATTTCAATATGAATTTTT
ATCCTCACTGAGGAAATAAGTTCCATCGGGACTGTGAGACAGGGGTGTTC
TAATACGGAAAATTTAACTGTTTAAATAACTCTGTTTCAAGAGCACAATA
ATAAGTTCTAATTAAAGTGTTATCAGAGGTGCTGACGGGATGCTTACTCA
AACCATCTATAGTTGCGAGAATGGGCTCCCAGAGCCTCCTGTAACTCAAC
CATAATAGATATATCTTTGGTCGTTTTCAGTACCACTGACGGAAGTTGGG
AACATTAACCCATTGAGATTGCCATTAATCGTTGCAGTGTCCAAGATTCA
ATTGGAAATTTGAAGTTTGTTGAATTTAACATCTTTTTCAATAATTTCAA
GTTACTTCTGTTTTTTGTTTCTTTAGAATCAACTTCAACTTGTTCCAATG
ACATTTTCATCGACGCTGGTGCTTTAGTGAAATGCATTTTCATTGAAACC
AACATCTTCAACACTGCTGGTCATGTCTTTATCAATGGCACCTTAACAGC
TGGTTACTTTGGCGAAGATTTGAACGTCAAAATCAAATCAAGTGATCTTC
ACATTGGCATCGATGCAATTGTTGGTCACAACTCAGTTGAAAATCAATCT
AAAAGATCAATCAATGACCATAAACATTGGTTAAAAACAAAAGTTTTAAA
TCTTCATATTCATGATGGTGGCTTAACAAATTTCGGATCACTAATAGCTA
CAGATTGTATCAAATTAAATGCAAATGGATTGTCGCTTTGCTCAGACTCT
AAACGTGATACTGCACATCGCGGATTAGATGGTTTTATTGGTATCAAGAA
AGATCAAGGGTTCATTGATAATGCGATTAAGCCGAAGAAAAAGAGAACCT
CGTCGTTCAATGATGATCGAATGATTCAAGCTGTTCATAACTCTAATTGC
CAGAATTTTCTTTCCATTGTCAAAGAAGGTGTAGATCCTAACATCTTGGT
CGACGGGAGACGAGTGTCTGACGAGGTTGAAATTCAACGAAAAAATGTTG
GATTATCAGATCAAGAAAATTTGGAAATCATACGTACTGGACTACATTTA
AATGATTGGAAACATGGTATGATCAAAGCACCAATTATCGAATGCACAGT
TACTGGTGATATTGAGGACTGTTCACAGATCCAAGGTAGTGATATACGTT
TCAATGTTGGTGGTTGTGTCATCATTACTATACCTTGGACATGGATTTCC
AAAGATATCAGTGGACAAATCAGGGGAAATTTAATTTTCAATGATAATGC
TATTATTGGTTGTTTCAAAGACCTTCAGGTGGGTTACTTGTGTTACTAAA
TATTACTTATAATTATTTTTAGTTTTTTAGTTTTTTTGGTGAACATAAGC
GAGTCAAATACTTTTAGGTTCTCAAATAAACTTTGCCTTCGGCTCTGGAA
ATTTTACATCACAATGAATTCTCTATATAACTCGACTATACTTTATCTTT
TGTCTTAAAACATTCGAGCTGTGATGAATCCATTATTTGCTTTTCATCCC
TTAAGTGCCTGACCCCTTATATAAGTCAAAATTCTTGGTCATGTTGAAAA
CAAAATAAGAATTATACATGCCATGATTAATGGCGGTAGGAAATGATAAT
TATTTTGAGTTCTTATAGACAATAACAGAGTTTTTAGTCTGAATGGCAGA
CCTCTATAGATATAAACAGAACAGAAGAACAGAAGACACATAGTTTTCCT
CAATTTTATGGAAAATTGATCTATTTATATTTTTAGGTTCTTGGTAATGT
TGTGATCTCCAACACATCCACTTTGTACATCCAAAGAGGGGGCCGTTTAT
ACTGCGCAAAAGCATTAGTGAACAGCAATGAAATCATATGCGAAGGAGAT
CTTCAATTAGATGTTGCTCACATAAAGCAAACCGATGAAGGATTGATTAT
CAACAAAGGTGATTTGCTGGTAAATGTACATGATGTACGTGAACAACAAG
AGCAAACCGATGAAGGATTGATTATCAACAAAGGTGATTTGCTGAAAGGT
GATTGGTTCGGCAATATCCTGGTACACAATCATTTTTTCCTCCAACTTCA
GAAGAAAGTTGTTATTGATGCTCACGTTATATGCAAAGAATGTACTGTTC
AATTCTTTGGGCCAGAATCTCAGTTGGAGATCAACGGAACATGGATTGTA
GACGTTGGTGTTTTGAATCTTGAAGCCGATGAACATGCTAGTGATGGTGA
AATTCCAAATCTAGTTCTGGTTGGTCAGCTCTTTGCCAAGGGTATTGAAG
GAATGACAGCTTCCATTGAAACAGAACCTGGTGCACTTTGCCTTCTGACA
GAAAGTATAGATCCAGCTGTCAATGGAATCAATCTCGATGTCAAATGGAT
GAAGATAAAATCTGATTCTGTGATAAGCTGTACTGGAGCTCCAGAGAATT
CCAAGATGTCAAACACTGTGAATGTCAATTGCCAAGAGGAGTTGACCATC
TTTGGTGAACTTCGAATCGCTGGTATAAATCACTCAAACATTCATACACA
ATCATTGAAGAACTCTGGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056930-exon-scaffold_284-1575043694:469450..469458 | TCONS_00056930-exon-scaffold_284-1575043694:469450..469458 | Clytia hemisphaerica | exon |
| TCONS_00056930-exon-scaffold_284-1575043694:467928..468189 | TCONS_00056930-exon-scaffold_284-1575043694:467928..468189 | Clytia hemisphaerica | exon |
| TCONS_00056930-exon-scaffold_284-1575043694:465381..466282 | TCONS_00056930-exon-scaffold_284-1575043694:465381..466282 | Clytia hemisphaerica | exon |
| TCONS_00056930-exon-scaffold_284-1575043694:464139..464922 | TCONS_00056930-exon-scaffold_284-1575043694:464139..464922 | Clytia hemisphaerica | exon |
| TCONS_00056930-exon-scaffold_284-1510915933:469450..469458 | TCONS_00056930-exon-scaffold_284-1510915933:469450..469458 | Clytia hemisphaerica | exon |
| TCONS_00056930-exon-scaffold_284-1510915933:467928..468189 | TCONS_00056930-exon-scaffold_284-1510915933:467928..468189 | Clytia hemisphaerica | exon |
| TCONS_00056930-exon-scaffold_284-1510915933:465381..466282 | TCONS_00056930-exon-scaffold_284-1510915933:465381..466282 | Clytia hemisphaerica | exon |
| TCONS_00056930-exon-scaffold_284-1510915933:464139..464922 | TCONS_00056930-exon-scaffold_284-1510915933:464139..464922 | Clytia hemisphaerica | exon |
| TCONS_00056930-exon-scaffold_284-1491911889:469450..469458 | TCONS_00056930-exon-scaffold_284-1491911889:469450..469458 | Clytia hemisphaerica | exon |
| TCONS_00056930-exon-scaffold_284-1491911889:467928..468189 | TCONS_00056930-exon-scaffold_284-1491911889:467928..468189 | Clytia hemisphaerica | exon |
| TCONS_00056930-exon-scaffold_284-1491911889:465381..466282 | TCONS_00056930-exon-scaffold_284-1491911889:465381..466282 | Clytia hemisphaerica | exon |
| TCONS_00056930-exon-scaffold_284-1491911889:464139..464922 | TCONS_00056930-exon-scaffold_284-1491911889:464139..464922 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_284 | supercontig | scaffold_284:464139..469458 - |
Blast
The following BLAST results are available for this feature:
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