TCONS_00056930 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056930
Unique NameTCONS_00056930
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1957

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056930 ID=TCONS_00056930|Name=TCONS_00056930|organism=Clytia hemisphaerica|type=transcript|length=1957bp
ACTAAACAGAAAGATAAAATCAAGATCTCAATTGTGGTGCAATCAGATGA
TTTATCAATACGAACAAATCTATTGGAAAGCACATTTACCAGTTTAACAA
AATTCACACTGACTGCACCAAATATCACATTATACAAATCGCAAATTGAT
AAAACACAAGATGGGGTCAATCTAGATTTGGTTTCAACAGGAACGTTAAG
AATATCATCACACCCATTGGCCGTCAGAAATGTTTCATTGACTGTGTTAC
CACtttctgaagaagaaaaagaATCAACTTCAACTTGTTCCAATGACATT
TTCATCGACGCTGGTGCTTTAGTGAAATGCATTTTCATTGAAACCAACAT
CTTCAACACTGCTGGTCATGTCTTTATCAATGGCACCTTAACAGCTGGTT
ACTTTGGCGAAGATTTGAacgtcaaaatcaaatcaagtgATCTTCACATT
GGCATCGATGCAATTGTTGGTCACAACTCAGTTGAAAATCAATCTAAAAG
ATCAATCAATGACCATAAACATTGgttaaaaacaaaagttttaaatcTTC
ATATTCATGATGGTGGCTTAACAAATTTCGGATCACTAATAGCTACAGAT
TGTATCAAATTAAATGCAAATGGATTGTCGCTTTGCTCAGACTCTAAACG
TGATACTGCACATCGCGGATTAGATGGTTTTATTGGTATCAAGAAAGATC
AAGGGTTCATTGATAATGCGATTAAGCCGAAGAAAAAGAGAACCTCGTCG
TTCAATGATGATCGAATGATTCAAGCTGTTCATAACTCTAATTGCCAGAA
TTTTCTTTCCATTGTCAAAGAAGGTGTAGATCCTAACATCTTGGTCGACG
GGAGACGAGTGTCTGACGAGGTTGAAATTCAACGAAAAAATGTTGGATTA
TCAGATcaagaaaatttggaaatcATACGTACTGGACTACATTTAAATGA
TTGGAAACATGGTATGATCAAAGCACCAATTATCGAATGCACAGTTACTG
GTGATATTGAGGACTGTTCACAGATCCAAGGTAGTGATATACGTTTCAAT
GTTGGTGGTTGTGTCATCATTACTATACCTTGGACATGGATTTCCAAAGA
TATCAGTGGACAAATCAGgggaaatttaattttcaatgataatgCTATTA
TTGGTTGTTTCAAAGACCTTCAGGTTCTTGGTAATGTTGTGATCTCCAAC
ACATCCACTTTGTACATCCAAAGAGGGGGCCGTTTATACTGCGCAAAAGC
ATTAGTGAACAGCAATGAAATCATATGCGAAGGAGATCTTCAATTAGATG
TTGCTCACATAAAGCAAACCGATGAAGGATTGATTATCAACAAAGGTGAT
TTGCTGGTAAATGTACATGATGTACGTGAACAACAAGAGCAAACCGATGA
AGGATTGATTATCAACAAAGGTGATTTGCTGAAAGGTGATTGGTTCGGCA
ATATCCTGGTACACAATCATTTTTTCCTCCAACTTCAGAAGAAAGTTGTT
ATTGATGCTCACGTTATATGCAAAGAATGTACTGTTCAATTCTTTGGGCC
AGAATCTCAGTTGGAGATCAACGGAACATGGATTGTAGACGTTGGTGTTT
TGAATCTTGAAGCCGATGAACATGCTAGTGATGGTGAAATTCCAAATCTA
GTTCTGGTTGGTCAGCTCTTTGCCAAGGGTATTGAAGGAATGACAGCTTC
CATTGAAACAGAACCTGGTGCACTTTGCCTTCTGACAGAAAGTATAGATC
CAGCTGTCAATGGAATCAATCTCGATGTCAAATGGATGAAGATAAAATCT
GATTCTGTGATAAGCTGTACTGGAGCTCCAGAGAATTCCAAGATGTCAAA
CACTGTGAATGTCAATTGCCAAGAGGAGTTGACCATCTTTGGTGAACTTC
GAATCGCTGGTATAAATCACTCAAACATTCATACACAATCATTGAAGAAC
TCTGGCC
Run BLAST on NCBI

transcript from alignment at scaffold_284:464139..469458-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056930 ID=TCONS_00056930|Name=TCONS_00056930|organism=Clytia hemisphaerica|type=transcript|length=5320bp|location=Sequence derived from alignment at scaffold_284:464139..469458- (Clytia hemisphaerica)
ACTAAACAGGTACTTAAAGGTTTTATTTTACATAAGTGTTCCCGTTTTAT
ATCAGACACATATTTCATATCAGGACAGTGTCTTTCTATTGTTATATTAT
GCTGATATAATCAAAAATTCATATTTACTTAACTTGGAAAATACTAAACA
GGTACACGTTTTTTTATAAGAACAAACTATATAAGAACATAAGGCTTCGG
TGACTGAAATGTTAAGAACAAGTTGAGAACATTTTAAGACTTTGCCGACT
CTAACAACAGCCAGTTTCTTAGAAAATGGGTAAAAATGCTCTAAAATAGT
GAAAATAAGAATATGTTAAGAACATTTTCAGGCTTCTAACTCAAAAAGTT
AAGAACATCCTAAGGCTTCAAAAATTTTGGATGCTCTTATAAAAAAAGAA
AGTGTACTGTAGGTCACACTGTAGAGTTTATGGTCAAAAATTAAAAATAT
GTCATTTTCTCTTTACTATCCTAATTTCGAAATCCTAATTGGTTTGTTCG
GTGTGTGTTGATTACTATTTCTATGAATTAGACCTTAATTAGTGTTAATT
ACGAAAAAAGCTGTTAATAGTAACTGTTAATAGCTATGAAACTAGGGGTA
CTAGGGTTACAAGTTGGCGGGGGGAGTTACCGCCCGACTTTCGATCCGCG
GATCCTTACCGGGCCTAAACAGGAGAAAACAAAGGAAAATTTTGTTGATT
TTACGACCTTTATTGGGACAAATTTGACCAATTTTTTATCTTTCCGGGGA
TAAAAAGTTAAAATTTTCCTATTTCTCCGACCCTTAGTGGGACTGCAACT
TGATTTTCTGATTTTTCCGACCCTTAGCGAGACTTTGGAAATCCAAAAAA
GCTACCCTTTAGGGCGGCACATACCATACCCTCCATTTGCCTAAGTACCC
CCCCCCTTGGATTGAAGCAAGGGCAAACATTGGAAGCTGATAAAATTATG
ACTTGTACCGGGTGTCCTAGAAAAAAATCCCCTCTTTCTCTTTTCTCCAG
TTCTGCCTCTTAAAGAATCAGTATTTTTTGCATTGGCAAGAGGAAGGATA
AACTTAAACTTTGAAGGGTCATTTGTTAAATTTGGTCAACTAGATCAAAA
GTTATGGCCTAGATGCTAAAACTTTACTTTTCAAAAAAGTTTAAAAAAGG
CGAAAAACGAGGGTATTGAATTTATTGTATGACAAAGACATCAATGTTTT
TTTATTCGGGGGCTATGCCAGTACACCTTAGTTTACAAACTCACTCACCC
AAGGATCTCTCTTTTATAGAAAGATAAAATCAAGATCTCAATTGTGGTGC
AATCAGATGATTTATCAATACGAACAAATCTATTGGAAAGCACATTTACC
AGTTTAACAAAATTCACACTGACTGCACCAAATATCACATTATACAAATC
GCAAATTGATAAAACACAAGATGGGGTCAATCTAGATTTGGTTTCAACAG
GAACGTTAAGAATATCATCACACCCATTGGCCGTCAGAAATGTTTCATTG
ACTGTGTTACCACTTTCTGAAGAAGAAAAAGGTGAATAGATTTTTAATGC
ACCCCTCCCCATAGCTGTCAACTTCGCCTCGCAAAAATGCGGTCGGAAAA
ATTCTCCCCGGTAATCCAATTTTTCCCAATGGAAAGATCAGGAAATCGAG
GGAATTTCTCTGCGAAGTCCGATTTTATCGGAATTTTTTTTCGAGAAATC
AGGGAAATCGGGGAATTTTTCGTCCCATTTCCAAATTCAGGAAATTTTGC
CATGTCGCTTTTACCATGAACATATAAACGACTGGACACCTATCTTTTAT
TGTCTCTTTGAAGCGAGCTTCGTTGCCGCCTGTTTTTCAAAATTGGTATA
AAAAATCCGACAATATTCCGTCATAATTTTATTTCTTTGAATTATTTAGG
TAAAAAGATTGATAGAGCTTGAATATTACCCCTAATGAACAAAAAAATTA
TTTTCGAATTTTTTTGCAAGTTTGTAATTTATTTTATCAACTTTTTCAAC
TCTGAAATGCAGAATTTCAACTGCGTGTATACTTTTGAATCCCTTTTGTC
ACTCCATTAATTTTTTTTATGACTTGAAAAAAATAGCTTGCCAAAGTTGA
GAACCTGTGTAATAAGAATATCGAAATTAGAATGTGACACTCTCTAAAAT
TATTAGACACTTTTAAGTCAAAATTTTGAAATATAAGTCGGAGTTTTGAC
AAGCTGACGATGATTTTGCCTCTGTTATCTTTGTTATGATATAGATAAAA
GACTTGAGAGGAGTAGAACAACAGAGAGACTTTAGACGAAGTTTTGATGT
TGTTAACAAGGTATTCCCAAGTGGTATATATCATCAAAATCTATTGTTTC
ATTTTATGCTTTTAACGAGGCGGCAACGAAGCTAGCCGTGTTATCTTAAA
AAAGACAAAGGAAATGGATGTCCAGTCGTTTATCTGTTCATGCTTTTACA
AAATCTGAAATTTTTTTCAGGAGATCGGAAAATTTTTGGAAATATGCGGG
AGATGCGGGAGAAAACGTTGGCATGCGGAAGTCTCCTGCCCAATGCAGGA
GAGTTGACAGCTATGCCTTCCCTGTGTCACAGATCCACTGGGACCCCAGC
CCCACTGGAAAATCTGGCAAAAATTTCGTCCACGGTAGTAAATACCCTGG
AATTTTAGCCCCACTGGGAAATTGACTTATATTTCATCCCCATTCGAAAT
TGAATGTTTAAAAATTGCGCTCCAAAACCATCCCCACTGGATTTTTTAGC
CTTTGAAGAATAGAATTTCTCTCCCCATTGGGATTTCAATATGAATTTTT
ATCCTCACTGAGGAAATAAGTTCCATCGGGACTGTGAGACAGGGGTGTTC
TAATACGGAAAATTTAACTGTTTAAATAACTCTGTTTCAAGAGCACAATA
ATAAGTTCTAATTAAAGTGTTATCAGAGGTGCTGACGGGATGCTTACTCA
AACCATCTATAGTTGCGAGAATGGGCTCCCAGAGCCTCCTGTAACTCAAC
CATAATAGATATATCTTTGGTCGTTTTCAGTACCACTGACGGAAGTTGGG
AACATTAACCCATTGAGATTGCCATTAATCGTTGCAGTGTCCAAGATTCA
ATTGGAAATTTGAAGTTTGTTGAATTTAACATCTTTTTCAATAATTTCAA
GTTACTTCTGTTTTTTGTTTCTTTAGAATCAACTTCAACTTGTTCCAATG
ACATTTTCATCGACGCTGGTGCTTTAGTGAAATGCATTTTCATTGAAACC
AACATCTTCAACACTGCTGGTCATGTCTTTATCAATGGCACCTTAACAGC
TGGTTACTTTGGCGAAGATTTGAACGTCAAAATCAAATCAAGTGATCTTC
ACATTGGCATCGATGCAATTGTTGGTCACAACTCAGTTGAAAATCAATCT
AAAAGATCAATCAATGACCATAAACATTGGTTAAAAACAAAAGTTTTAAA
TCTTCATATTCATGATGGTGGCTTAACAAATTTCGGATCACTAATAGCTA
CAGATTGTATCAAATTAAATGCAAATGGATTGTCGCTTTGCTCAGACTCT
AAACGTGATACTGCACATCGCGGATTAGATGGTTTTATTGGTATCAAGAA
AGATCAAGGGTTCATTGATAATGCGATTAAGCCGAAGAAAAAGAGAACCT
CGTCGTTCAATGATGATCGAATGATTCAAGCTGTTCATAACTCTAATTGC
CAGAATTTTCTTTCCATTGTCAAAGAAGGTGTAGATCCTAACATCTTGGT
CGACGGGAGACGAGTGTCTGACGAGGTTGAAATTCAACGAAAAAATGTTG
GATTATCAGATCAAGAAAATTTGGAAATCATACGTACTGGACTACATTTA
AATGATTGGAAACATGGTATGATCAAAGCACCAATTATCGAATGCACAGT
TACTGGTGATATTGAGGACTGTTCACAGATCCAAGGTAGTGATATACGTT
TCAATGTTGGTGGTTGTGTCATCATTACTATACCTTGGACATGGATTTCC
AAAGATATCAGTGGACAAATCAGGGGAAATTTAATTTTCAATGATAATGC
TATTATTGGTTGTTTCAAAGACCTTCAGGTGGGTTACTTGTGTTACTAAA
TATTACTTATAATTATTTTTAGTTTTTTAGTTTTTTTGGTGAACATAAGC
GAGTCAAATACTTTTAGGTTCTCAAATAAACTTTGCCTTCGGCTCTGGAA
ATTTTACATCACAATGAATTCTCTATATAACTCGACTATACTTTATCTTT
TGTCTTAAAACATTCGAGCTGTGATGAATCCATTATTTGCTTTTCATCCC
TTAAGTGCCTGACCCCTTATATAAGTCAAAATTCTTGGTCATGTTGAAAA
CAAAATAAGAATTATACATGCCATGATTAATGGCGGTAGGAAATGATAAT
TATTTTGAGTTCTTATAGACAATAACAGAGTTTTTAGTCTGAATGGCAGA
CCTCTATAGATATAAACAGAACAGAAGAACAGAAGACACATAGTTTTCCT
CAATTTTATGGAAAATTGATCTATTTATATTTTTAGGTTCTTGGTAATGT
TGTGATCTCCAACACATCCACTTTGTACATCCAAAGAGGGGGCCGTTTAT
ACTGCGCAAAAGCATTAGTGAACAGCAATGAAATCATATGCGAAGGAGAT
CTTCAATTAGATGTTGCTCACATAAAGCAAACCGATGAAGGATTGATTAT
CAACAAAGGTGATTTGCTGGTAAATGTACATGATGTACGTGAACAACAAG
AGCAAACCGATGAAGGATTGATTATCAACAAAGGTGATTTGCTGAAAGGT
GATTGGTTCGGCAATATCCTGGTACACAATCATTTTTTCCTCCAACTTCA
GAAGAAAGTTGTTATTGATGCTCACGTTATATGCAAAGAATGTACTGTTC
AATTCTTTGGGCCAGAATCTCAGTTGGAGATCAACGGAACATGGATTGTA
GACGTTGGTGTTTTGAATCTTGAAGCCGATGAACATGCTAGTGATGGTGA
AATTCCAAATCTAGTTCTGGTTGGTCAGCTCTTTGCCAAGGGTATTGAAG
GAATGACAGCTTCCATTGAAACAGAACCTGGTGCACTTTGCCTTCTGACA
GAAAGTATAGATCCAGCTGTCAATGGAATCAATCTCGATGTCAAATGGAT
GAAGATAAAATCTGATTCTGTGATAAGCTGTACTGGAGCTCCAGAGAATT
CCAAGATGTCAAACACTGTGAATGTCAATTGCCAAGAGGAGTTGACCATC
TTTGGTGAACTTCGAATCGCTGGTATAAATCACTCAAACATTCATACACA
ATCATTGAAGAACTCTGGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035863XLOC_035863Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056930-exon-scaffold_284-1575043694:469450..469458TCONS_00056930-exon-scaffold_284-1575043694:469450..469458Clytia hemisphaericaexon
TCONS_00056930-exon-scaffold_284-1575043694:467928..468189TCONS_00056930-exon-scaffold_284-1575043694:467928..468189Clytia hemisphaericaexon
TCONS_00056930-exon-scaffold_284-1575043694:465381..466282TCONS_00056930-exon-scaffold_284-1575043694:465381..466282Clytia hemisphaericaexon
TCONS_00056930-exon-scaffold_284-1575043694:464139..464922TCONS_00056930-exon-scaffold_284-1575043694:464139..464922Clytia hemisphaericaexon
TCONS_00056930-exon-scaffold_284-1510915933:469450..469458TCONS_00056930-exon-scaffold_284-1510915933:469450..469458Clytia hemisphaericaexon
TCONS_00056930-exon-scaffold_284-1510915933:467928..468189TCONS_00056930-exon-scaffold_284-1510915933:467928..468189Clytia hemisphaericaexon
TCONS_00056930-exon-scaffold_284-1510915933:465381..466282TCONS_00056930-exon-scaffold_284-1510915933:465381..466282Clytia hemisphaericaexon
TCONS_00056930-exon-scaffold_284-1510915933:464139..464922TCONS_00056930-exon-scaffold_284-1510915933:464139..464922Clytia hemisphaericaexon
TCONS_00056930-exon-scaffold_284-1491911889:469450..469458TCONS_00056930-exon-scaffold_284-1491911889:469450..469458Clytia hemisphaericaexon
TCONS_00056930-exon-scaffold_284-1491911889:467928..468189TCONS_00056930-exon-scaffold_284-1491911889:467928..468189Clytia hemisphaericaexon
TCONS_00056930-exon-scaffold_284-1491911889:465381..466282TCONS_00056930-exon-scaffold_284-1491911889:465381..466282Clytia hemisphaericaexon
TCONS_00056930-exon-scaffold_284-1491911889:464139..464922TCONS_00056930-exon-scaffold_284-1491911889:464139..464922Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:464139..469458 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.136853	0.0432571	0.13047	0.0977154	0.0342064	0	0.123377	0.135171	0.836898	0.883145	0.829812	1.19969	0.502797	4.37509e-10	0	0.948234	0	0.11486	0.558509	0.507766	4.61972	0.106357	1.06259e-06	0	0.15769	0.160661
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056930 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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