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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00056920 ID=TCONS_00056920|Name=TCONS_00056920|organism=Clytia hemisphaerica|type=transcript|length=2391bp
TAGAGGATGAGATTGAAACAATTAGAAAATGGTATAAAGGGGTATACATA
TCAAAATGACTTTTTcgttcaaaaaaattatagaaaaatgtaACTATGTA
CAAAACACAAAATACTCCTTAGTCTCTTATTTACATtatggtttttattt
tttcgaaagaatgatagcgagtttatgtatgtgtgttttttgcGACGGAG
ACGGTGAGCCTTTATataatttgtctacatcctgactAAGTGTAGCCTAT
GCTaaacgtcacccgcgtttttttacgcaattaacgtctattccactttg
cgactttttcgaatgttttgagcccgggttttcgggctataaacattcga
ttttttgacgtcacttttaactatCGAAGCTCCTccagtagcaaaataat
cgaatttgcgtcaaaacacttgaaaggcttctatttttcgaaaatcgtca
aagtggaaatcactaagaaacgagatgaaaaatcccggtttttagtgagg
tgctcacCTGACTAACTGAGGACAACGGTAAATCAGAACTTAACTTAAAC
GGTCCTCGATTTttcgggtcagaactgcgggttgtTCTAAATTGCTTCAG
GCACTCAACCATCCttaaaaatgcaaatacataaactcgataATATTAAG
GTTGTCTGAATAAAAGAATATTGGGAAGCCCATACGTTACTAACCGGTCC
CAAACGACACCACGacaagatatttaaaaaaagaagcaaaaatcGCCAGT
GGTAGGGGTGGAACTGGCTTACTCGAGAATCCTAAAGGATCTAATATATT
TCAAGGTTTAATAATTCCAGGTTTAGGTGCTCCTTGAATGAATTTGAccg
aacattttaaaaataaaatgaataataaaaaacaatatcATAATTTAAAT
ACACATAAAATCAATAATTTATCTTGTAAGTAAAGAAGCCTTTACCAatc
atcaaaaattaaataaacattttaataAGAAATACGTTAATCTTTATTTA
TcgtttttataaatttctatATTTTAGCTCTCTAATGTTAATGCACTAAC
TATAACTACACAATATATTACACTAATATATCATTCCTTATTTTACCATT
CAATGAAAAAGTAGGAACTTCTACCAATTAAAATTGCGTTTATTTTGATC
CAGTCCAGTCAGCTGTAGTGTGTCAAATCCGACTTCGTCTTTTTATATTG
ATACCAAAAGTGACAATTTcgtggatttttttttcatgactGTTGATGAT
TTGAGTAAAAAAAACTATTCATTAAACTTAATACCACCCGATTTTATCAC
GGTGAGTTCAAGTGAGGTTCTTTATCCTTTTGTTCCTCTGCTTTCAACAA
AATCATGATTCTTATAGTTCCGGTGGAAAGAGTCCGGTCAGCACTCACTT
TAATGATTAAAACATTTAATGACAATAATTCCATATTCTTCAAATATTTA
GTTTAGGATTATTATTTCCCTTCTGATTATTGGTAACAGGAAGGGTGAAT
GAGTCAAACCCCACAGTTGAAAAAACGATAGCCAGACAAAAGCGAGGTTC
AATATGAACTGTTTGATAAATTTGTCAACTTTCAGTTCTCGTCCTTCAAC
GCCACTTCGATCGATCCAGTCTCTTGTTGAAGGGCGTAGAATTCAAACGC
CCTGCCAGTAAACTGATAGAAGTAGGGCAGATCGTAAAAATAATGTTCTT
GTAGACAATGTTCAATGACGCGTCCTCTAAGCAACATGTTTCCATATTTG
ATACCATCTGCACGATCAGTGATCAAGCCTTCTTCAAGTAACCAGTCAAT
CAAACAAGTCCCTGTGAAAACACCTTCGaattttcgaagtctgaaactGT
GAGACAATAAAAAGATTAATTATTCAGAGCGAGAGTGTATTGATAGcttt
tctgctttttttttcttttcttttttcagatggaccAAAAAACTCAAAGC
GTTGGAAAGATATAATGGTTTGAAATAGTACTTTTAGTCTTTGCGATAGA
ATTTAAAATATGATACTAATTCGACGAAATGAAACTATTTTTCCCTCATG
AAGCAATCTTCCCGTCAAATAGTCACGATGCCCAGAATATAAAGTACTTA
ATACCTTTGCCTAAATTTTTTCACTCAACGAAGAAATATTGggccatttt
atttcattttacccTGTCTAGATACAGGCCAGACCCCATTACTCGAACAG
TTCGAACAGAATCGAACTACTCGaacttttggaaattttcgAGAAGCTCG
ATTGAAGAAAAGTTTGAGAAGTTTGACCGAAGAGAAGTTCGGGATGTTCC
CTCGAAGATAAGCTCGTGAAGTTCGATCGACGAAAAGTTCGAGTACATCA
AAACTTTTTACCAAAAGATATATAACTATAATTGAcagatt Run BLAST on NCBI transcript from alignment at scaffold_284:249076..251705- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00056920 ID=TCONS_00056920|Name=TCONS_00056920|organism=Clytia hemisphaerica|type=transcript|length=2630bp|location=Sequence derived from alignment at scaffold_284:249076..251705- (Clytia hemisphaerica)
TAGAGGATGAGATTGAAACAATTAGAAAATGGTATAAAGGGGTATACATA
TCAAAATGACTTTTTCGTTCAAAAAAATTATAGAAAAATGTAACTATGTA
CAAAACACAAAATACTCCTTAGTCTCTTATTTACATTATGGTTTTTATTT
TTTCGAAAGAATGATAGCGAGTTTATGTATGTGTGTTTTTTGCGACGGAG
ACGGTGAGCCTTTATATAATTTGTCTACATCCTGACTAAGTGTAGCCTAT
GCTAAACGTCACCCGCGTTTTTTTACGCAATTAACGTCTATTCCACTTTG
CGACTTTTTCGAATGTTTTGAGCCCGGGTTTTCGGGCTATAAACATTCGA
TTTTTTGACGTCACTTTTAACTATCGAAGCTCCTCCAGTAGCAAAATAAT
CGAATTTGCGTCAAAACACTTGAAAGGCTTCTATTTTTCGAAAATCGTCA
AAGTGGAAATCACTAAGAAACGAGATGAAAAATCCCGGTTTTTAGTGAGG
TGCTCACCTGACTAACTGAGGACAACGGTAAATCAGAACTTAACTTAAAC
GGTCCTCGATTTTTCGGGTCAGAACTGCGGGTTGTTCTAAATTGCTTCAG
GCACTCAACCATCCTTAAAAATGCAAATACATAAACTCGATAATATTAAG
GTTGTCTGAATAAAAGAATATTGGGAAGCCCATACGTTACTAACCGGTCC
CAAACGACACCACGACAAGATATTTAAAAAAAGAAGCAAAAATCGCCAGT
GGTAGGGGTGGAACTGGCTTACTCGAGAATCCTAAAGGATCTAATATATT
TCAAGGTTTAATAATTCCAGGTTTAGGTGCTTCTTGAATGAATTTGACCG
AAAATTTCNCCATCCTTAAAAGTGCAAATACATAAACTCGCTAATTTAAG
GTTGTCTGAATAAAAGAATATTGGGAAGCCCATACGTTATACTAACCGGT
CCCAAACGGCAACATTTAAAAAAAGTTAAAATCGCCAGTGATAGGGGTGG
AACAGGCTTACTCGAGAATCCTAACGTTCTCATTATATTCCAAGGTTTGA
TAATTCCCGGGCTAGGTGCTCCTTGAATGAATTTGACCGAACATTTTAAA
AATAAAATGAATAATAAAAAACAATATCATAATTTAAATACACATAAAAT
CAATAATTTATCTTGTAAGTAAAGAAGCCTTTACCAATCATCAAAAATTA
AATAAACATTTTAATAAGAAATACGTTAATCTTTATTTATCGTTTTTATA
AATTTCTATATTTTAGCTCTCTAATGTTAATGCACTAACTATAACTACAC
AATATATTACACTAATATATCATTCCTTATTTTACCATTCAATGAAAAAG
TAGGAACTTCTACCAATTAAAATTGCGTTTATTTTGATCCAGTCCAGTCA
GCTGTAGTGTGTCAAATCCGACTTCGTCTTTTTATATTGATACCAAAAGT
GACAATTTCGTGGATTTTTTTTTCATGACTGTTGATGATTTGAGTAAAAA
AAACTATTCATTAAACTTAATACCACCCGATTTTATCACGGTGAGTTCAA
GTGAGGTTCTTTATCCTTTTGTTCCTCTGCTTTCAACAAAATCATGATTC
TTATAGTTCCGGTGGAAAGAGTCCGGTCAGCACTCACTTTAATGATTAAA
ACATTTAATGACAATAATTCCATATTCTTCAAATATTTAGTTTAGGATTA
TTATTTCCCTTCTGATTATTGGTAACAGGAAGGGTGAATGAGTCAAACCC
CACAGTTGAAAAAACGATAGCCAGACAAAAGCGAGGTTCAATATGAACTG
TTTGATAAATTTGTCAACTTTCAGTTCTCGTCCTTCAACGCCACTTCGAT
CGATCCAGTCTCTTGTTGAAGGGCGTAGAATTCAAACGCCCTGCCAGTAA
ACTGATAGAAGTAGGGCAGATCGTAAAAATAATGTTCTTGTAGACAATGT
TCAATGACGCGTCCTCTAAGCAACATGTTTCCATATTTGATACCATCTGC
ACGATCAGTGATCAAGCCTTCTTCAAGTAACCAGTCAATCAAACAAGTCC
CTGTGAAAACACCTTCGAATTTTCGAAGTCTGAAACTGTGAGACAATAAA
AAGATTAATTATTCAGAGCGAGAGTGTATTGATAGCTTTTCTGCTTTTTT
TTTCTTTTCTTTTTTCAGATGGACCAAAAAACTCAAAGCGTTGGAAAGAT
ATAATGGTTTGAAATAGTACTTTTAGTCTTTGCGATAGAATTTAAAATAT
GATACTAATTCGACGAAATGAAACTATTTTTCCCTCATGAAGCAATCTTC
CCGTCAAATAGTCACGATGCCCAGAATATAAAGTACTTAATACCTTTGCC
TAAATTTTTTCACTCAACGAAGAAATATTGGGCCATTTTATTTCATTTTA
CCCTGTCTAGATACAGGCCAGACCCCATTACTCGAACAGTTCGAACAGAA
TCGAACTACTCGAACTTTTGGAAATTTTCGAGAAGCTCGATTGAAGAAAA
GTTTGAGAAGTTTGACCGAAGAGAAGTTCGGGATGTTCCCTCGAAGATAA
GCTCGTGAAGTTCGATCGACGAAAAGTTCGAGTACATCAAAACTTTTTAC
CAAAAGATATATAACTATAATTGACAGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00056920-exon-scaffold_284-1575043694:250880..251705 | TCONS_00056920-exon-scaffold_284-1575043694:250880..251705 | Clytia hemisphaerica | exon |
| TCONS_00056920-exon-scaffold_284-1575043694:249076..250640 | TCONS_00056920-exon-scaffold_284-1575043694:249076..250640 | Clytia hemisphaerica | exon |
| TCONS_00056920-exon-scaffold_284-1510915933:250880..251705 | TCONS_00056920-exon-scaffold_284-1510915933:250880..251705 | Clytia hemisphaerica | exon |
| TCONS_00056920-exon-scaffold_284-1510915933:249076..250640 | TCONS_00056920-exon-scaffold_284-1510915933:249076..250640 | Clytia hemisphaerica | exon |
| TCONS_00056920-exon-scaffold_284-1491911889:250880..251705 | TCONS_00056920-exon-scaffold_284-1491911889:250880..251705 | Clytia hemisphaerica | exon |
| TCONS_00056920-exon-scaffold_284-1491911889:249076..250640 | TCONS_00056920-exon-scaffold_284-1491911889:249076..250640 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_284 | supercontig | scaffold_284:249076..251705 - |
Blast
The following BLAST results are available for this feature:
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