TCONS_00056908 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056908
Unique NameTCONS_00056908
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length717

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056908 ID=TCONS_00056908|Name=TCONS_00056908|organism=Clytia hemisphaerica|type=transcript|length=717bp
CAAGGACAGATCTCGTTTTTCAACAAACCCTGACACAGGTTTCTACACAC
TTGACAAAGACAATGTACCAACTGACGTATTCTGTGATTTCACAAACCAA
GGGAAACCTTCTTGtaaacatttgaaagaattttgtccaACTTGTTCATC
AGGATTTTACacttttgaaatcgaaaatgaattGAATAAGGTTTATTGTG
AAATGGATGTCGATGGAGGTGGCTGGTTGATGTTTTGAAACTTGGAAATC
ATCCCAGATGCAACATCTTTAGACTCTGCTATCAATGCTGTTCAAAACCC
ATCATCTATATCTCAACTTCAAAATGTGCAATCAGGATTTTTCTACTTGG
CACCCACAGAACTCCAAAAGCTTTACAAATCTTCTGGATACAGTGAAATG
CGTATTATGTGTTACAAAAGATGGCATATGCGGACCCTAGATGTCGTTTT
GACTGGCCTCAAATTCGTTGACTGGATGGTTAGTGGTTTCAAGAAAACTG
GATTGTGTGGTGATGTGCGATTTCTACCAATGGATGATTCATTCACATCT
GTTCAAGCTTGTTCTGGATTGAAATTCGGTGGAATTCATCTTATTTATGA
GCCCTACCAATACCACGTGGTCCTGGGATATCATGGCACGAAATGGAGCT
GTGACGATTCTAAAGGGAATGCAGGTTATACTACGGCTGGCAAGTGGGAG
TTGTACGTACGCTAGTT
Run BLAST on NCBI

protein sequence of TCONS_00056908-protein

>TCONS_00056908-protein ID=TCONS_00056908-protein|Name=TCONS_00056908-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
MRIMCYKRWHMRTLDVVLTGLKFVDWMVSGFKKTGLCGDVRFLPMDDSFT
SVQACSGLKFGGIHLIYEPYQYHVVLGYHGTKWSCDDSKGNAGYTTAGKW
ELYVR
Run BLAST on NCBI

transcript from alignment at scaffold_284:29303..30910-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056908 ID=TCONS_00056908|Name=TCONS_00056908|organism=Clytia hemisphaerica|type=transcript|length=1608bp|location=Sequence derived from alignment at scaffold_284:29303..30910- (Clytia hemisphaerica)
CAAGGACAGATCTCGTTTTTCAACAAACCCTGACACAGGTTTCTACACAC
TTGACAAAGACAATGTACCAACTGACGTATTCTGTGATTTCACAAACCAA
GGGAAACCTTCTTGTAAACATTTGAAAGAATTTTGTCCAACTTGTTCATC
AGGATTTTACACTTTTGAAATCGAAAATGAATTGAATAAGGTTTATTGTG
AAATGGATGTCGATGGAGGTATGAAGCATATGCATTCTTATCTTTTAAGC
TGAAACACAACGTTGTTGCAACGTTAACCTAACGTTGATGTTGAGAAATT
TGTCACACATTCCCTTAACTCTTTCTAAACGTGTGGGCAAATATTCTGAG
TTTTTCTCTTTTTTATTCACGTTACTGGTACGCATAGGCCTTTTCTAAAA
GTGTGTTCCAAAGAGGTATTTTTTTGTCTAAATCTTAGAGGCCGCTATTA
AAATTTTGATTATTTTCAAGATGCTACCTTGGGATTTTCCAGGTATTTTG
AGGGTAACCCTTCGGAAGGGAAGGATTTGGGAGAACAACGGTTGGTTTTC
TTTTTTTTTTTTTTGTCAATTGAAGTGCTCAAAAGATCATCCATTTGCAG
GTTACATTTTTCATTCCCCCCTCTGCGAGGTTTTGCCTCACAAAATTAAG
ATGAAGAGTTGAATCAATCAATCAACTACCTTTTCGTACATTTTGGAAGC
AAGGTAGATTGTATCGCAGACCTCTTGCAGGCAAGTGGTATCTACACCCC
TGTATCACAGACCCACTGAAACTCCAGCCCCACTGGAAAATTTGGAAGAA
ATTCCGTCCCTGTTGGGAAAGTACCCTGGAATTTCAGCCCCACTGGGAAA
TTGACTTTGATTTCATACCCATTCGAAAAATTCTGTGCTCAAAAACTGCA
TTCCAAAACCCATGCTCACTGGATTTTTCAACAATGCAATTTCTATCCCC
ATTGGAATTACACTAGGAATTTTTATCCCACTGATGAAAAAAGTTCCACC
GGGCTGTGAGACAGGGGTGTGTATCTATAGCGAATACGAATTCAACTTAG
GTTGAAAACTTTATACACATGAAGTAATATCATTATCCATTATTTCGATA
CTTTTCAAGGTGGCTGGTTGATGTTTTGAAACTTGGAAATCATCCCAGAT
GCAACATCTTTAGACTCTGCTATCAATGCTGTTCAAAACCCATCATCTAT
ATCTCAACTTCAAAATGTGCAATCAGGATTTTTCTACTTGGCACCCACAG
AACTCCAAAAGCTTTACAAATCTTCTGGATACAGTGAAATGCGTATTATG
TGTTACAAAAGATGGCATATGCGGACCCTAGATGTCGTTTTGACTGGCCT
CAAATTCGTTGACTGGATGGTTAGTGGTTTCAAGAAAACTGGATTGTGTG
GTGATGTGCGATTTCTACCAATGGATGATTCATTCACATCTGTTCAAGCT
TGTTCTGGATTGAAATTCGGTGGAATTCATCTTATTTATGAGCCCTACCA
ATACCACGTGGTCCTGGGATATCATGGCACGAAATGGAGCTGTGACGATT
CTAAAGGGAATGCAGGTTATACTACGGCTGGCAAGTGGGAGTTGTACGTA
CGCTAGTT

Coding sequence (CDS) from alignment at scaffold_284:29303..30910-

>TCONS_00056908 ID=TCONS_00056908|Name=TCONS_00056908|organism=Clytia hemisphaerica|type=CDS|length=318bp|location=Sequence derived from alignment at scaffold_284:29303..30910- (Clytia hemisphaerica)
ATGCGTATTATGTGTTACAAAAGATGGCATATGCGGACCCTAGATGTCGT
TTTGACTGGCCTCAAATTCGTTGACTGGATGGTTAGTGGTTTCAAGAAAA
CTGGATTGTGTGGTGATGTGCGATTTCTACCAATGGATGATTCATTCACA
TCTGTTCAAGCTTGTTCTGGATTGAAATTCGGTGGAATTCATCTTATTTA
TGAGCCCTACCAATACCACGTGGTCCTGGGATATCATGGCACGAAATGGA
GCTGTGACGATTCTAAAGGGAATGCAGGTTATACTACGGCTGGCAAGTGG
GAGTTGTACGTACGCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035850XLOC_035850Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056908-proteinTCONS_00056908-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056908-exon-scaffold_284-1575043694:30693..30910TCONS_00056908-exon-scaffold_284-1575043694:30693..30910Clytia hemisphaericaexon
TCONS_00056908-exon-scaffold_284-1575043694:29303..29801TCONS_00056908-exon-scaffold_284-1575043694:29303..29801Clytia hemisphaericaexon
TCONS_00056908-exon-scaffold_284-1510915933:30693..30910TCONS_00056908-exon-scaffold_284-1510915933:30693..30910Clytia hemisphaericaexon
TCONS_00056908-exon-scaffold_284-1510915933:29303..29801TCONS_00056908-exon-scaffold_284-1510915933:29303..29801Clytia hemisphaericaexon
TCONS_00056908-exon-scaffold_284-1491911889:30693..30910TCONS_00056908-exon-scaffold_284-1491911889:30693..30910Clytia hemisphaericaexon
TCONS_00056908-exon-scaffold_284-1491911889:29303..29801TCONS_00056908-exon-scaffold_284-1491911889:29303..29801Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:29303..30910 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.170856	0	0.466036	0.231073	0.206476	0.283174	4.56143	3.51391	9.2305	9.55359	0.0913295	0.48344	2.48368	4.43765	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056908 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top