TCONS_00056900 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056900
Unique NameTCONS_00056900
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length388

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056900 ID=TCONS_00056900|Name=TCONS_00056900|organism=Clytia hemisphaerica|type=transcript|length=388bp
cAGCAAAGATGAAGCTCGCAATCGTTTTAATGTTGTCATTCTGTTTGTTC
TTACAAACTCAAGCCAGGAAAATTGATGACGAGAAATATTTCGAGAAAAT
GGAAAACGACCCAACCCGCTGTGTTTACGAGGGAGGTTTTTGCCATCCAT
TCAGTAGATGTTGTGCACAAAAACATCAAGTGCTTATGTGCATTGGTTTC
AAGTGTAAAGCACCAATGAGGATAGTAAAGGGTTGGTTTGGCAAAAAATA
ATCTATTTGTGTTTTAAACCAAGTATTTTAATTTTCCTTAACGctagcat
tttcattttcatggaaGAGAAAATCGTAAAGACTAGAATTTATTTCCTAT
TTATTGTATCTTATGAGAAAGTATTTCCTTTTATGGCG
Run BLAST on NCBI

transcript from alignment at scaffold_284:1274395..1274782+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056900 ID=TCONS_00056900|Name=TCONS_00056900|organism=Clytia hemisphaerica|type=transcript|length=388bp|location=Sequence derived from alignment at scaffold_284:1274395..1274782+ (Clytia hemisphaerica)
cAGCAAAGATGAAGCTCGCAATCGTTTTAATGTTGTCATTCTGTTTGTTC
TTACAAACTCAAGCCAGGAAAATTGATGACGAGAAATATTTCGAGAAAAT
GGAAAACGACCCAACCCGCTGTGTTTACGAGGGAGGTTTTTGCCATCCAT
TCAGTAGATGTTGTGCACAAAAACATCAAGTGCTTATGTGCATTGGTTTC
AAGTGTAAAGCACCAATGAGGATAGTAAAGGGTTGGTTTGGCAAAAAATA
ATCTATTTGTGTTTTAAACCAAGTATTTTAATTTTCCTTAACGctagcat
tttcattttcatggaaGAGAAAATCGTAAAGACTAGAATTTATTTCCTAT
TTATTGTATCTTATGAGAAAGTATTTCCTTTTATGGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035846XLOC_035846Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056900-exon-scaffold_284-1491911889:1274395..1274782TCONS_00056900-exon-scaffold_284-1491911889:1274395..1274782Clytia hemisphaericaexon
TCONS_00056900-exon-scaffold_284-1510915933:1274395..1274782TCONS_00056900-exon-scaffold_284-1510915933:1274395..1274782Clytia hemisphaericaexon
TCONS_00056900-exon-scaffold_284-1575043694:1274395..1274782TCONS_00056900-exon-scaffold_284-1575043694:1274395..1274782Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:1274395..1274782 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.594599	0.956706	0.673235	0.219552	1.06913	0.211211	13.9531	13.285	127.134	35.9288	168.685	213.243	20.9275	14.0312	74.0407	54.417	3.66689	2.0453	3.00217	1.06967	1.14978	1.12165	1.13626	0.619815	0.961098	0.379835	0.354854	0	0.84727	0.448262
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056900 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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