TCONS_00056893 (transcript) - C. hemisphaerica

Overview
NameTCONS_00056893
Unique NameTCONS_00056893
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1680

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00056893 ID=TCONS_00056893|Name=TCONS_00056893|organism=Clytia hemisphaerica|type=transcript|length=1680bp
CAAGTTTCCTTGCTTAATGATGAAACATAGATGTTGTTTTATGATGGGTA
AAGCCAAAAGAAAGTTACTTCCCtctaaaaatagttttgaagATGTTACG
CCAGCCAAACATTCCAGAACATCAAGTACAGATGGAGACGCAATGTTCAA
AGAACAATGGCAAAACAGTGACGCAGTTTTAATAGTAGAAAACCAAGAAC
TACATGTCCATACTTCAATATTATCAATCGcttccaaatattttgaaaaa
atgttcaaCGGAAACTTCAAGGAAGCTGAAACGAGAAGAGTGACTTTGGA
AGAAAAGAGTTATGATTTGGTAGAACATATGCTGAGGTTGATCTATCCTG
TCAAATGTGGTCTAAGTCCAAAATCATTGCTTTGTAATGTCTGTATGTTT
CATGCTGGAACTCCATCACCTGGAGaaGGTCACTACATAATGCCAACAGA
ATCAAACAGCATTGAATGTCAAGAGTGCGGCGTGAAATTCATTAAGAGAG
atcATCATGAAAAACTAGTGATGGAACATTTACAAAAGCTGTATCAACTT
TCTGAAGAATTCTTTATGGATACTATCACTGACAAAATAATAGAAGAAAT
CACTCGCCTAAGTAAAAATATTCAGGGCATTTCTCAAGCATTCTTTTTAC
TTGAAACTGCTGAAGTTCTCGAATTGAATACTGTTAAAGAAGCATGTTTT
GGGTACCTACGTAAAACATTAAATTCCATGTCATTACTAAGAAGGTATTC
GACTGGCATGAATTATTCATTAAACACAAGAATGCGATTGAAAGGTATGG
TTTTAAAGAATTTGGTCAAAATGTTGAAACCTCAAAACAATAAGGAGAAT
TGTGCCGTTGAAGAGTGTTTGGAAATTGCTGGATCGTTGTTGAACTTTGA
TGCTGCGAAAGAAATCGATGGCACGTTTTTGAACACTGCTTTTTCTTCAC
CCACCTGAATAAATTTAAAAGACTTACTTGGAATTTTTACAGTCGTCATG
AACAATCTGAAATCTAATTCCAGCTGAAATACTGAGAACCACGTTTATGA
TTGGTTTATGCACTATACGACAGCAAGATCACTACAATTGGCTTTATTTA
ATCTATTTCTCGAGGATCATCATTGGTATACATGGTACAAGCTTGGGATG
GTAAAGTGGCAAGCCACGATTTATCCAAGTTCATTGAAGAAGTATTAAAA
TATGTTGTAAAAAGACATTGAGTATTTTCACCGAAGGTACTCATTATGAG
TGATTTCATTGGCTCTAAAAAAAGACATTATCATTTTTGAAGGATATGTA
CAGCTTAAAACGATTTAGATGTATatttcagtttttatttttatttctta
cccattttacatattttacaGTAGTCCCCGCCACGTCACTTATACATTTT
CCTTTCTTCCCAACCCCCCGCTCCTTTAAAGAATTCTTGACTTTGATAAA
CATCCAGCCTTGTTTACCCCCTGCCCCTCTGTACAGAGTGTCCGGTGATA
TGCTTTTTGAAACGAAATTTTATCCTGTATgtactttttagtttttatca
acaatatttctttattttaatgGACATGGATGCTTTCTATAGACGTTTTT
Tacaagagcaaactatataagaacatcaggcttcgatggctaaattatta
agaacaagttaagaacattttaaggctttt
Run BLAST on NCBI

transcript from alignment at scaffold_284:1154204..1158258+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00056893 ID=TCONS_00056893|Name=TCONS_00056893|organism=Clytia hemisphaerica|type=transcript|length=4055bp|location=Sequence derived from alignment at scaffold_284:1154204..1158258+ (Clytia hemisphaerica)
CAAGTTTCCTTGCTTAATGATGAAACATAGATGTTGTTTTATGGTGAGTC
ACGTAAACTATTTTTATTTGAATGCTTTTTAAAGAAGAGAGAAATTGTTG
ATTATTTTCCATGTTTATCATTTTTCCTTGTCTCTGTATCTTATTTGCGC
ACATATTACAAAAGAGCTTACATTTCTGGTCATTAATATTAATTTCCAGG
GTGTTTTGTCTTTCTAGATATCCACTATAACTGCATAAAGACTAATACGA
TACGCTGTGTTGTTGATATTAGATCTTAATTTACTGTTTGACCGATTTTA
GTTTCTTAATTTTGAAACTAAATTCAATagtattttttttcgatttgttt
ttttctattcCCTGCTCTTTAACATcactaaaaatttctttatctttaGA
TGGGTAAAGCCAAAAGAAAGTTACTTCCCtctaaaaatagttttgaagAT
GTTACGCCAGCCAAACATTCCAGAACATCAAGTACAGATGGAGACGCAAT
GTTCAAAGAACAATGGCAAAACAGTGACGCAGTTTTAATAGTAGAAAACC
AAGAACTACATGTCCATACTTCAATATTATCAATCGcttccaaatatttt
gaaaaaatgttcaaCGGAAACTTCAAGGAAGCTGAAACGAGAAGAGTGAC
TTTGGAAGAAAAGAGTTATGATTTGGTAGAACATATGCTGAGGTTGATCT
ATCCTGTCAAATGTGGTCTAAGTAAGAATCGAAAATCTTTTGATTAAACT
TTTTGTAGTATCTAGTGGTTTAAGAGCTAACCAACTTTCAAGCATTTACA
CTTACAATGATGCTTAATTATTTTATATTAACGTGTTGAATTATCTTTAT
ATGTTACGAGGTTATGCTTTGTATGCCGAGGTTATcgttctacacgtttt
tttattagaacatctaaaatttttgaagccttcggatgttcttaactttt
tgagtttgaagtttaaaaaggttcctaacatgttcttatttcccgcattt
ttatgtatttttgctcattttcctaagaaattggctgttttagagtcctc
agctaagcttgttcttaacatttttgccatcgaagccttatattcttata
tagtttgttcttataaaaaacgtgtacagcgACTTGAGATTTTACTAGCT
CATTAGACATTCGTTAATCAATACTTCGATCATCTGCTGGTTTGAGAGAG
AAGGTAGTGTAGGttagtgaaggtagagagtctatatTATTCTGTAACGC
CCTTTCTGGAAGTACTTCGGTTTCAAACACCTCAGTCAATTGCGGTGCAA
GTTTATGATCGAAACCCAACCTCGGTTTtcagctttttgattcttactga
tagcgctagataatattctctggcgtaacgtaaaacgtaaataaagcctg
ggatacacggggacgaggtcgatcgaaaccttcacacttcACACATACTT
TCATTTGTTTGATACTTTTTTGTATGTGTCATTTTAGGTCCAAAATCATT
GCTTTGTAATGTCTGTATGTTTCATGCTGGAACTCCATCACCTGGAGGTA
TTTATTGTAAATCAAACTTAATTTCTATATTCTCTAAATAGCTTTGGGGG
AGAGCGGAGGTTATAAAATGGTAGGAAATTGGACAGTATTTTTTTCTTGC
ATTACGCTTTTACATTTACGTCTATTTGGGAGACAAAATAGACATAACTA
TTCAAAACGGATAGCACACCAACAATATGGCAGCAACTGAAGTACTTTTA
GTTTATTATTGAATTTCTTCGTTTAactttatatattatttttcattttt
gtagaaGGTCACTACATAATGCCAACAGAATCAAACAGCATTGAATGTCA
AGAGTGCGGCGTGAAATTCATTAAGAGAGGTGACTTTTAAATTCAAGAAT
GACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNACGGATAGCGCACCAACAATATGGCAGCAACTGAAGTAC
TTTTAGTTTATTATTGAATTTCTTCGTTTAactttatatattatttttca
tttttgtagaaGGTCACTACATAATGCCAACAGAATCAAACAGCATTGAA
TGTCAAGAGTGCGGCGTGAAATTCATTAAGAGAGGTGACTTTTAAATTCA
AGAATGACCGTTGTTCCGGATTTCTTAGATTTCACTTCTTTTTTTCACTT
AGTAACCGAGATTTTAAGGAACCAGCTCTGAGAATGGTGAAAAAATAAGC
AGCTTGCAACCTAGCCCTGAAACTGAGCATAAACTGGGAAATCAACcaaa
aaatacctaaaaaacaattttatcatTTCGGCATTATTTGGCATTAAATT
GTGATTTTAAATTTAGATACAaaatttgaggtattttagacataaaatga
tttaaaaagtcaaaaaatttcaagttgctATGCTCTTTTGGCTCAAAATC
CATAAGCAACTATTTGGTTAAAATCTGGAAAATCCAACCCGGAGCAAATC
CAACCTTGAGCTGAAAATTAGGGTTGCTTATAATATAAAAAAGGACGGTA
CTTAACGTTGTATACCGCAAATAACCGGATATTAACAAAAATACAAGAAC
ATATACTGCAAATCAAGTACATCCTTGACATGTGTTTTATAGTCCAATAA
TTCCCAAATTgaactctttctttttcttatcaTGGGTTCTGTGGAAGCAA
TTAGCGAAAACCTAGATAGGCCATCCTTATATGTGGTAATGTGTATGTCT
GCTTTATTGGGCAATCTAAAACTTAACTGAAGTCTCCTTGTTAGATAATT
GACATATCCAGTCTAGTCTTTAAAGTGCTCACGGGCTGCTTAAACCAATA
TCAACgctgtttctttttattttagatcATCATGAAAAACTAGTGATGGA
ACATTTACAAAAGCTGTATCAACTTTCTGAAGAATTCTTTATGGATACTA
TCACTGACAAAATAATAGAAGAAATCACTCGCCTAAGTAAAAATATTCAG
GGCATTTCTCAAGCATTCTTTTTACTTGAAACTGCTGAAGTTCTCGAATT
GAATACTGTTAAAGAAGCATGTTTTGGGTACCTACGTAAAACATTAAATT
CCATGTCATTACTAAGAAGGTATTCGACTGGCATGAATTATTCATTAAAC
ACAAGAATGCGATTGAAAGGTATGGTTTTAAAGAATTTGGTCAAAATGTT
GAAACCTCAAAACAATAAGGAGAATTGTGCCGTTGAAGAGTGTTTGGAAA
TTGCTGGATCGTTGTTGAACTTTGATGCTGCGAAAGAAATCGATGGCACG
TTTTTGAACACTGCTTTTTCTTCACCCACCTGAATAAATTTAAAAGACTT
ACTTGGAATTTTTACAGTCGTCATGAACAATCTGAAATCTAATTCCAGCT
GAAATACTGAGAACCACGTTTATGATTGGTTTATGCACTATACGACAGCA
AGATCACTACAATTGGCTTTATTTAATCTATTTCTCGAGGATCATCATTG
GTATACATGGTACAAGCTTGGGATGGTAAAGTGGCAAGCCACGATTTATC
CAAGTTCATTGAAGAAGTATTAAAATATGTTGTAAAAAGACATTGAGTAT
TTTCACCGAAGGTACTCATTATGAGTGATTTCATTGGCTCTAAAAAAAGA
CATTATCATTTTTGAAGGATATGTACAGCTTAAAACGATTTAGATGTATa
tttcagtttttatttttatttcttacccattttacatattttacaGTAGT
CCCCGCCACGTCACTTATACATTTTCCTTTCTTCCCAACCCCCCGCTCCT
TTAAAGAATTCTTGACTTTGATAAACATCCAGCCTTGTTTACCCCCTGCC
CCTCTGTACAGAGTGTCCGGTGATATGCTTTTTGAAACGAAATTTTATCC
TGTATgtactttttagtttttatcaacaatatttctttattttaatgGAC
ATGGATGCTTTCTATAGACGTTTTTTacaagagcaaactatataagaaca
tcaggcttcgatggctaaattattaagaacaagttaagaacattttaagg
ctttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_035839XLOC_035839Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00056893-exon-scaffold_284-1491911889:1154204..1154246TCONS_00056893-exon-scaffold_284-1491911889:1154204..1154246Clytia hemisphaericaexon
TCONS_00056893-exon-scaffold_284-1510915933:1154204..1154246TCONS_00056893-exon-scaffold_284-1510915933:1154204..1154246Clytia hemisphaericaexon
TCONS_00056893-exon-scaffold_284-1575043694:1154204..1154246TCONS_00056893-exon-scaffold_284-1575043694:1154204..1154246Clytia hemisphaericaexon
TCONS_00056893-exon-scaffold_284-1491911889:1154603..1154924TCONS_00056893-exon-scaffold_284-1491911889:1154603..1154924Clytia hemisphaericaexon
TCONS_00056893-exon-scaffold_284-1510915933:1154603..1154924TCONS_00056893-exon-scaffold_284-1510915933:1154603..1154924Clytia hemisphaericaexon
TCONS_00056893-exon-scaffold_284-1575043694:1154603..1154924TCONS_00056893-exon-scaffold_284-1575043694:1154603..1154924Clytia hemisphaericaexon
TCONS_00056893-exon-scaffold_284-1491911889:1155691..1155750TCONS_00056893-exon-scaffold_284-1491911889:1155691..1155750Clytia hemisphaericaexon
TCONS_00056893-exon-scaffold_284-1510915933:1155691..1155750TCONS_00056893-exon-scaffold_284-1510915933:1155691..1155750Clytia hemisphaericaexon
TCONS_00056893-exon-scaffold_284-1575043694:1155691..1155750TCONS_00056893-exon-scaffold_284-1575043694:1155691..1155750Clytia hemisphaericaexon
TCONS_00056893-exon-scaffold_284-1491911889:1156263..1156337TCONS_00056893-exon-scaffold_284-1491911889:1156263..1156337Clytia hemisphaericaexon
TCONS_00056893-exon-scaffold_284-1510915933:1156263..1156337TCONS_00056893-exon-scaffold_284-1510915933:1156263..1156337Clytia hemisphaericaexon
TCONS_00056893-exon-scaffold_284-1575043694:1156263..1156337TCONS_00056893-exon-scaffold_284-1575043694:1156263..1156337Clytia hemisphaericaexon
TCONS_00056893-exon-scaffold_284-1491911889:1157079..1158258TCONS_00056893-exon-scaffold_284-1491911889:1157079..1158258Clytia hemisphaericaexon
TCONS_00056893-exon-scaffold_284-1510915933:1157079..1158258TCONS_00056893-exon-scaffold_284-1510915933:1157079..1158258Clytia hemisphaericaexon
TCONS_00056893-exon-scaffold_284-1575043694:1157079..1158258TCONS_00056893-exon-scaffold_284-1575043694:1157079..1158258Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_284supercontigscaffold_284:1154204..1158258 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	54.6873	31.6187	1.98621	0.0321473	0	0.331285	0	0.269183	0.0910009	0.22141	0.130236	0.166968	0.384779	0.326392	0	0	0.0863961	0.309673	0.114306	0.167527	0	0	0	0	0.128763	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00056893 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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